MS019137 (gene) Bitter gourd (TR) v1

Overview


Name	MS019137
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	double-stranded RNA-binding protein 4-like isoform X1
Location	scaffold20: 1816337 .. 1818851 (-)
RNA-Seq Expression	MS019137
Synteny	MS019137

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATACAAGAGTCAATTGCATGAGTACGCGCAAAGATCGAGGATCCCATTACCAGTTTATCAAACAGTTATTGAAGGATCTATAGGTTTACCAAAATATAGGTCTACTGTGTTAGTTGATGAGGTACATTACGTGTCTCCAAATACGTTTCGTAATCGAAGGGGAGCTGAACATGATGCTGCTAGAATTGCCCTTGAGTACATATCAAAAAGAACAAAGGACGATGGCTTTCTTCTTCTTCAGGAGGTATGATTTATATAATAAGATCGAAACTTGTTCGGGTGACCTTTGGACTTTAGTACGTTTATATATTCGGTAAGATTTCCCATAGACATTCTATGAGATTGTAAATTATCCGATTTATCTTAGTAATGAGACATTTAGTTTGTCAGAATAAGAAGTTTGACTATGAGACCCTTGGGAATGTGATGGCTAGAAATTGGATGCTTTTGTTGGCAGTTCACAGGAATAGGTTTCAAACATATGAGAATGAGGGATAGTGCTCTAGGTAGGATGGTCATCATGGGTTCTAAACTCATTCCCTCTAAGTCTCTGTACTTCCACTAGTTGTAATGGACCCTTAGGCCAACTCAGGATAGTTATCATCTATATTATCTTTATCTTCATAAGATTCTCTGTATTGCTGTAGTTTTTTAAATTTATGTACGTCTTAATACGGCTTGGATTCTATATTCATTTCTCCTACATCTTTATGTTGTCTTATCAAAAAGAAATAATGATAAAGTAGTTCATGTGAATAAATATTAGGAAGTAGTATGGAGTATTCAATATTCTCGGAGGAATATACTTATTTCTCTGATTCCACATACGTTCTAGGTGATATTAGCAATTTATTTTTGCATTCTAACACATTTTATTTACAACCTTAGCTGTAGTTTCTCTTCTGCTCCACTCTTTGTTGTATTACGTCTATAGTATAGACTATAACGCTTCCCTACTTCATATTCAAACATTGGGCATATTTTTTACTATGAGTCTTTTTNNNNNNNAAAAGAAACAGATTTCATTAATGTAATGAAATGGAAAAGGAATACAAAAGGGGAAGATCCCAAACCAAAGGAGTTACAAAAAGGCTCTCCAATTGGTTAAAAGAGAAACAAAGCTATAGTGTTTAAAGATAGGAGAGCATTTGCACCAAGATACAACCATAGACACTATAGATTCAAAAATGATGCCAACAGAAAGCTCCTTTCCTAAGAAGATCCGGCGATTTCTTTCTAACCATGTCGACCAAAGCAGCGCCCTAACAAAATGCTTCCATAGGATTCCTGCTTCACTGGTGAAAGGGTGCTCCAGAAGAGTGGATGCTAGAAGAGAACAGAGATCCGTGTGTAGGACTATAGGCCAACCGAAGGATGAAAGAATAGAGGTTTTTACTCTGAGTCTGTGGAAACAGGAAACTACTATTCACTTATTTAAAACTTCACACTAAGATGAGCTCTACCTTCACCCGAAGAATAAGATCACCAACATTATAACTTAATTAGGCGATAATTTACTTTATAATTCAATTCGATCAAGGCAATAGTTTTGTGTCCTTGTCATCTTAATGGTGCATTTACTTATGATTTGATTGTCATTGACTGTTTTAAAATTTCATTCAGGCTAGATTATGATATCAAGTACTAGTAACTTTTCTATGTCAGTATTGATTTTTTTTTTTTTTTTTGAGAAATACTCATCATTGATATGTTGAAAAGATAAACACATATATATTTTTGTTGGAGTACTTTTTATCATTTTTGTGTCTAATGTACAAATTATGTTTTTTTGTTCTTTGTTCAGGATTTGATGTTTTGTAAGTCCATTTTATCTGAATATACGGTCAAAATGAACTTGAAAAGACCTCTTTACACAACAAATCATCACGACGGCTCAGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACCGGCAATCTTAGTAGGAGCAAAAAAGAGGCCGAGCAATTGGCAGCACGTGCTGCTATACTATCACTTATTGGTATTTAATTGTTGTGAACAAATACTTGTGAATTATTCCAAAATACCTGCTGCCTTGCGAAAGTTGTCGAATTTTTTTACAGGTGATGCAGGAAATCCCGAATCACAAAAAACCCTTACTAAAATTATTGCTTCTAAAGTCAGACTCCATGCAACGTTGCAAAAGGTTAAAGATTCATTTCCATCACAAATTCAATCCAAACCCATGTCTGAAAAGTCAGAGCAAGGACATGTTGGAATGACAGTTAATGAAGATATATATGTCGAAAATGCTAGTTTGACTGATGAAGTTGTATCTGGTGCAATTTCAGAGATTCCTCCCACAACATCTCATTTTCAACCTGAATTTAAACCAGAAGCATCACCCCTTTCAGTGAGACTCCCTATAGAATATGTGCCTTCAACTTTAGAGGAACCTGTAGGTGATCATGCGACTGGGTCTAGAAAGCGGTCCAAGAACAGGAGAAAGGCGCGTAAGAAATTGCATGTTGAGAACCAG

mRNA sequence

ATATACAAGAGTCAATTGCATGAGTACGCGCAAAGATCGAGGATCCCATTACCAGTTTATCAAACAGTTATTGAAGGATCTATAGGTTTACCAAAATATAGGTCTACTGTGTTAGTTGATGAGGTACATTACGTGTCTCCAAATACGTTTCGTAATCGAAGGGGAGCTGAACATGATGCTGCTAGAATTGCCCTTGAGTACATATCAAAAAGAACAAAGGACGATGGCTTTCTTCTTCTTCAGGAGGATTTGATGTTTTGTAAGTCCATTTTATCTGAATATACGGTCAAAATGAACTTGAAAAGACCTCTTTACACAACAAATCATCACGACGGCTCAGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACCGGCAATCTTAGTAGGAGCAAAAAAGAGGCCGAGCAATTGGCAGCACGTGCTGCTATACTATCACTTATTGGTGATGCAGGAAATCCCGAATCACAAAAAACCCTTACTAAAATTATTGCTTCTAAAGTCAGACTCCATGCAACGTTGCAAAAGGTTAAAGATTCATTTCCATCACAAATTCAATCCAAACCCATGTCTGAAAAGTCAGAGCAAGGACATGTTGGAATGACAGTTAATGAAGATATATATGTCGAAAATGCTAGTTTGACTGATGAAGTTGTATCTGGTGCAATTTCAGAGATTCCTCCCACAACATCTCATTTTCAACCTGAATTTAAACCAGAAGCATCACCCCTTTCAGTGAGACTCCCTATAGAATATGTGCCTTCAACTTTAGAGGAACCTGTAGGTGATCATGCGACTGGGTCTAGAAAGCGGTCCAAGAACAGGAGAAAGGCGCGTAAGAAATTGCATGTTGAGAACCAG

Coding sequence (CDS)

ATATACAAGAGTCAATTGCATGAGTACGCGCAAAGATCGAGGATCCCATTACCAGTTTATCAAACAGTTATTGAAGGATCTATAGGTTTACCAAAATATAGGTCTACTGTGTTAGTTGATGAGGTACATTACGTGTCTCCAAATACGTTTCGTAATCGAAGGGGAGCTGAACATGATGCTGCTAGAATTGCCCTTGAGTACATATCAAAAAGAACAAAGGACGATGGCTTTCTTCTTCTTCAGGAGGATTTGATGTTTTGTAAGTCCATTTTATCTGAATATACGGTCAAAATGAACTTGAAAAGACCTCTTTACACAACAAATCATCACGACGGCTCAGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACCGGCAATCTTAGTAGGAGCAAAAAAGAGGCCGAGCAATTGGCAGCACGTGCTGCTATACTATCACTTATTGGTGATGCAGGAAATCCCGAATCACAAAAAACCCTTACTAAAATTATTGCTTCTAAAGTCAGACTCCATGCAACGTTGCAAAAGGTTAAAGATTCATTTCCATCACAAATTCAATCCAAACCCATGTCTGAAAAGTCAGAGCAAGGACATGTTGGAATGACAGTTAATGAAGATATATATGTCGAAAATGCTAGTTTGACTGATGAAGTTGTATCTGGTGCAATTTCAGAGATTCCTCCCACAACATCTCATTTTCAACCTGAATTTAAACCAGAAGCATCACCCCTTTCAGTGAGACTCCCTATAGAATATGTGCCTTCAACTTTAGAGGAACCTGTAGGTGATCATGCGACTGGGTCTAGAAAGCGGTCCAAGAACAGGAGAAAGGCGCGTAAGAAATTGCATGTTGAGAACCAG

Protein sequence

IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDAARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQSTLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQKVKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPEFKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ

Homology

[Close]

BLAST of MS019137 vs. NCBI nr
Match: XP_022143454.1 (double-stranded RNA-binding protein 4-like isoform X1 [Momordica charantia])

HSP 1 Score: 567.4 bits (1461), Expect = 7.2e-158
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA
Sbjct: 78  IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST
Sbjct: 138 ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK
Sbjct: 198 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE
Sbjct: 258 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 317

Query: 241 FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
           FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ
Sbjct: 318 FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 368

[Close]

BLAST of MS019137 vs. NCBI nr
Match: XP_022935532.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 412.9 bits (1060), Expect = 2.3e-111
Identity = 224/294 (76.19%), Postives = 246/294 (83.67%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRIPLPVYQT  EGS G+PKYRSTV+VDEVHYVSPNTFRNRR AE DA
Sbjct: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISK+ KDDGF+LL EDLM CKSILSEYTVKM+LKRP+YTT  H+GSVPIFQST
Sbjct: 138 ARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTG++SRSKKEAEQLAARAAILSL  DAGNP+SQKTL +IIASKVRLHA +QK
Sbjct: 198 LVFDGVVYTGDISRSKKEAEQLAARAAILSL-HDAGNPKSQKTLAEIIASKVRLHAMMQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS PSQIQ K M + + + HV  TVNED  V  A L + V  GAISEI PT SH  PE
Sbjct: 258 VKDSHPSQIQPKYMPDNTVE-HVTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPE 317

Query: 241 F---KPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
           F   KPEAS  S RLPIE VPST EEPVGD ATGS+KRSKN+RKARKKL +ENQ
Sbjct: 318 FRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQ 369

[Close]

BLAST of MS019137 vs. NCBI nr
Match: KAG6581214.1 (Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 409.8 bits (1052), Expect = 1.9e-110
Identity = 223/294 (75.85%), Postives = 245/294 (83.33%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHE+ Q+SRIPLPVYQT  EGS G+PKYRSTV+VDEVHYVSPNTFRNRR AE DA
Sbjct: 78  LYKNHLHEFTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISK+ KDDGF+LL EDLM CKSILSEYTVKM+LKRP+YTT  H+GSVPIFQST
Sbjct: 138 ARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTG++SRSKKEAEQLAARAAILSL  DAGNP+SQKTL +IIASKVRLHA +QK
Sbjct: 198 LVFDGVVYTGDISRSKKEAEQLAARAAILSL-HDAGNPKSQKTLAEIIASKVRLHAMMQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS PSQIQ K M E + + HV  TVNED  V  A L + V  GAISEI PT SH  PE
Sbjct: 258 VKDSHPSQIQPKYMPENTVE-HVTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPE 317

Query: 241 F---KPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
           F   KP AS  S RLPIE VPST EEPVGD ATGS+KRSKN+RKARKKL +ENQ
Sbjct: 318 FRSIKPVASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQ 369

[Close]

BLAST of MS019137 vs. NCBI nr
Match: XP_038897078.1 (double-stranded RNA-binding protein 8-like isoform X1 [Benincasa hispida] >XP_038897083.1 double-stranded RNA-binding protein 8-like isoform X1 [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 5.6e-110
Identity = 222/296 (75.00%), Postives = 250/296 (84.46%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRI LPVYQT  EGS+G+PKYRSTV+VDEVHYVSPNTFRNR+ AE DA
Sbjct: 78  LYKNHLHEYTQKSRIQLPVYQTFNEGSLGVPKYRSTVMVDEVHYVSPNTFRNRKAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIA EYISK+TKDDGFLLL+EDLM CKSILSEYT KM+LKRP+YTT HH GSVP FQST
Sbjct: 138 ARIAFEYISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           L FDGVVYT ++SRSKKEAEQLAARAAILSL GDA NP+SQKTL +IIASKVR HATLQK
Sbjct: 198 LDFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDARNPKSQKTLAEIIASKVRFHATLQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS  SQIQ K M E   + HV MTV+E+  V++A L + VV GAISE+ P TSHF+PE
Sbjct: 258 VKDSHFSQIQPKSMPENKVE-HVAMTVDENKEVKDAILDNGVVCGAISEVCP-TSHFRPE 317

Query: 241 F---KPEASPLSVRLPIEYVPSTLEEPVGDH--ATGSRKRSKNRRKARKKLHVENQ 292
           F   KPEAS   VRLPIE+VPSTLEEPVGDH  ATGS++RSKN+RKARKKL +ENQ
Sbjct: 318 FRSTKPEASSPPVRLPIEFVPSTLEEPVGDHARATGSKRRSKNKRKARKKLCMENQ 371

[Close]

BLAST of MS019137 vs. NCBI nr
Match: XP_038897098.1 (double-stranded RNA-binding protein 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 408.3 bits (1048), Expect = 5.6e-110
Identity = 222/296 (75.00%), Postives = 250/296 (84.46%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRI LPVYQT  EGS+G+PKYRSTV+VDEVHYVSPNTFRNR+ AE DA
Sbjct: 42  LYKNHLHEYTQKSRIQLPVYQTFNEGSLGVPKYRSTVMVDEVHYVSPNTFRNRKAAEQDA 101

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIA EYISK+TKDDGFLLL+EDLM CKSILSEYT KM+LKRP+YTT HH GSVP FQST
Sbjct: 102 ARIAFEYISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQST 161

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           L FDGVVYT ++SRSKKEAEQLAARAAILSL GDA NP+SQKTL +IIASKVR HATLQK
Sbjct: 162 LDFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDARNPKSQKTLAEIIASKVRFHATLQK 221

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS  SQIQ K M E   + HV MTV+E+  V++A L + VV GAISE+ P TSHF+PE
Sbjct: 222 VKDSHFSQIQPKSMPENKVE-HVAMTVDENKEVKDAILDNGVVCGAISEVCP-TSHFRPE 281

Query: 241 F---KPEASPLSVRLPIEYVPSTLEEPVGDH--ATGSRKRSKNRRKARKKLHVENQ 292
           F   KPEAS   VRLPIE+VPSTLEEPVGDH  ATGS++RSKN+RKARKKL +ENQ
Sbjct: 282 FRSTKPEASSPPVRLPIEFVPSTLEEPVGDHARATGSKRRSKNKRKARKKLCMENQ 335

[Close]

BLAST of MS019137 vs. ExPASy Swiss-Prot
Match: Q6YW64 (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.8e-26
Identity = 81/253 (32.02%), Postives = 133/253 (52.57%), Query Frame = 0


Query: 2   YKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDAA 61
           YKS+L EY Q++   LP+Y T  +G     K++STV+VD   + S    R  + AE DAA
Sbjct: 39  YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98

Query: 62  RIALEYISKRTK-----DDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPI 121
           ++A + + +R +      D F L+ +D++F KSIL EYT K    +P Y+    +GSV  
Sbjct: 99  KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP 158

Query: 122 FQSTLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHA 181
           + S++ F G  YTG  +R+KK+AEQ AARAA+ SL+       +  ++ KI+ SK +L  
Sbjct: 159 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLA-----TNYTSMAKIVRSKEKLIR 218

Query: 182 TLQKVKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSH 241
            +      +   I S P ++K     +  T      + +  +  +++S   +   P  + 
Sbjct: 219 AIS--PSGYNKGIDSNPTNKKLPFAPIKFTPPSIFKLYDGEI--DMLSVPQALFAPLVAA 278

Query: 242 FQPEFKPEASPLS 250
            +P+ +P A P S
Sbjct: 279 EEPKVRPAAEPAS 282

[Close]

BLAST of MS019137 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-21
Identity = 75/244 (30.74%), Postives = 121/244 (49.59%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           ++KS+L EYAQ+ ++P PVY+ V EG      ++STV++D V Y S   F NR+ AE  A
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  ARIALEYISKRTKDDGFLLLQ-EDLMFCKSILSEYTVKMNLKRPLYTTNHHD--GSVPIF 120
           A +AL  ++K ++    +     +   CK++L EY  KMN   PLY     +  G V  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 121 QSTLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGN--PESQKTLTKIIASKVRLH 180
             T+   G+ YTG  +R+KK+AE  A R A+L++  D  N        LT +   K  + 
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCEKKTIQ 194

Query: 181 ATLQKVKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTS 240
           A +   +     + +     +K+++G   +  N +  +     TD   +   SE   TT 
Sbjct: 195 AAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPEDIIIPPQPTDHCQNDQ-SEKIETTP 254

[Close]

BLAST of MS019137 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.3e-20
Identity = 61/192 (31.77%), Postives = 99/192 (51.56%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           ++KS+L EYAQ++ +  P Y T  EG    P ++STV+++   Y S   F NR+ AE  A
Sbjct: 35  VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           A +AL  I K    +  +   ++   CK++L EY  KMN   P Y        +  F  T
Sbjct: 95  AEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCT 154

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           +   G+ Y G  +R+KK+AE  AAR A+L++ G +    +  T   ++  K R+   ++K
Sbjct: 155 VEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK-RVGKEVEK 214

Query: 181 VKDSFPSQIQSK 193
                P  +++K
Sbjct: 215 RPIETPKPLKAK 225

[Close]

BLAST of MS019137 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.6e-20
Identity = 69/246 (28.05%), Postives = 114/246 (46.34%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           ++KS+L EYAQ++ +  P Y T  EG    P ++STV+++   Y S   F NR+ AE  A
Sbjct: 33  VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           A +AL  I K    +  +   ++   CK++L EY  KMN   P Y        +  F  T
Sbjct: 93  AEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICT 152

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           +   G+ Y G  +R+KK+AE  AAR A+L++ G +    +  T   ++  K R+   ++K
Sbjct: 153 VEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK-RVGKEVEK 212

Query: 181 VKDSFPSQIQSK-------------------PMSEKSEQGHVGMTVNEDIYVENASLTDE 228
           +    P  ++ K                    + EK E    G   + D+ ++   +T E
Sbjct: 213 MPIETPKPLKIKKGGFKKKWNKRKFMKKDGQAVVEKDEARVAGDAHDSDVLMQPTVITQE 272

[Close]

BLAST of MS019137 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 61/192 (31.77%), Postives = 98/192 (51.04%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           ++KS+L EYAQ++ +  P Y T  EG    P ++STV+++   Y S   F NR+ AE  A
Sbjct: 33  VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           A +AL  I K    +  +   ++   CK++L EY  KMN   P Y        +  F  T
Sbjct: 93  AEVALMEIVKSIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICT 152

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           +   G+ Y G  +R+KK+AE  AAR A+L++ G +    +  T   ++  K R+   ++K
Sbjct: 153 VEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK-RVGKEVEK 212

Query: 181 VKDSFPSQIQSK 193
                P  ++ K
Sbjct: 213 RPIETPKPLKVK 223

[Close]

BLAST of MS019137 vs. ExPASy TrEMBL
Match: A0A6J1CPC5 (double-stranded RNA-binding protein 4-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013327 PE=4 SV=1)

HSP 1 Score: 567.4 bits (1461), Expect = 3.5e-158
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA
Sbjct: 78  IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST
Sbjct: 138 ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK
Sbjct: 198 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE
Sbjct: 258 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 317

Query: 241 FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
           FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ
Sbjct: 318 FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 368

[Close]

BLAST of MS019137 vs. ExPASy TrEMBL
Match: A0A6J1F5U3 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442377 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 1.1e-111
Identity = 224/294 (76.19%), Postives = 246/294 (83.67%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRIPLPVYQT  EGS G+PKYRSTV+VDEVHYVSPNTFRNRR AE DA
Sbjct: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISK+ KDDGF+LL EDLM CKSILSEYTVKM+LKRP+YTT  H+GSVPIFQST
Sbjct: 138 ARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTG++SRSKKEAEQLAARAAILSL  DAGNP+SQKTL +IIASKVRLHA +QK
Sbjct: 198 LVFDGVVYTGDISRSKKEAEQLAARAAILSL-HDAGNPKSQKTLAEIIASKVRLHAMMQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS PSQIQ K M + + + HV  TVNED  V  A L + V  GAISEI PT SH  PE
Sbjct: 258 VKDSHPSQIQPKYMPDNTVE-HVTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPE 317

Query: 241 F---KPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
           F   KPEAS  S RLPIE VPST EEPVGD ATGS+KRSKN+RKARKKL +ENQ
Sbjct: 318 FRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQ 369

[Close]

BLAST of MS019137 vs. ExPASy TrEMBL
Match: A0A6J1J9P9 (double-stranded RNA-binding protein 4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482525 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.5e-110
Identity = 222/294 (75.51%), Postives = 244/294 (82.99%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRIPLPVYQT  EGS G+PKYRSTV+VDEVHYVSPNTFRNRR AE DA
Sbjct: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISK+ KDDGF+LL EDLM CKSILSEYTVKM+LKRP+YTT  H+GSVPIFQST
Sbjct: 138 ARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTG++SRSKKEAEQLAARAAILSL  DAGNP+SQKTL +IIASKVRLHA +QK
Sbjct: 198 LVFDGVVYTGDISRSKKEAEQLAARAAILSL-HDAGNPKSQKTLAEIIASKVRLHAMMQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS PSQIQ K M E + + HV  TVNED  V  A L + V  GAISEI PT SH  PE
Sbjct: 258 VKDSHPSQIQPKYMPENTVE-HVTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPE 317

Query: 241 ---FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
               KP AS  S RLPIE VPST EEPVGD ATG++KRSKN+RKARKKL +ENQ
Sbjct: 318 LRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKARKKLCMENQ 369

[Close]

BLAST of MS019137 vs. ExPASy TrEMBL
Match: A0A6J1J4E3 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482525 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 3.5e-110
Identity = 222/294 (75.51%), Postives = 244/294 (82.99%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRIPLPVYQT  EGS G+PKYRSTV+VDEVHYVSPNTFRNRR AE DA
Sbjct: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISK+ KDDGF+LL EDLM CKSILSEYTVKM+LKRP+YTT  H+GSVPIFQST
Sbjct: 138 ARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTG++SRSKKEAEQLAARAAILSL  DAGNP+SQKTL +IIASKVRLHA +QK
Sbjct: 198 LVFDGVVYTGDISRSKKEAEQLAARAAILSL-HDAGNPKSQKTLAEIIASKVRLHAMMQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS PSQIQ K M E + + HV  TVNED  V  A L + V  GAISEI PT SH  PE
Sbjct: 258 VKDSHPSQIQPKYMPENTVE-HVTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPE 317

Query: 241 ---FKPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
               KP AS  S RLPIE VPST EEPVGD ATG++KRSKN+RKARKKL +ENQ
Sbjct: 318 LRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKARKKLCMENQ 369

[Close]

BLAST of MS019137 vs. ExPASy TrEMBL
Match: A0A6J1FAT0 (double-stranded RNA-binding protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111442377 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 1.2e-105
Identity = 216/294 (73.47%), Postives = 240/294 (81.63%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+ LHEY Q+SRIPLPVYQT  EGS G+PKYRSTV+VDEVHYVSPNTFRNRR AE DA
Sbjct: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGSVPIFQST 120
           ARIALEYISK+ KDDGF+LL EDLM CKSILSEYTVKM+LKRP+YTT  H+GSVPIFQST
Sbjct: 138 ARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQST 197

Query: 121 LVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQK 180
           LVFDGVVYTG++SRSKKEAEQLAARAAILSL  DAGNP+SQKTL +IIASKVRLHA +QK
Sbjct: 198 LVFDGVVYTGDISRSKKEAEQLAARAAILSL-HDAGNPKSQKTLAEIIASKVRLHAMMQK 257

Query: 181 VKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTSHFQPE 240
           VKDS PSQIQ K M + + + HV  TVNE          D+ V+GAI +     SH  PE
Sbjct: 258 VKDSHPSQIQPKYMPDNTVE-HVTTTVNE----------DKEVNGAILDNVVAISHLGPE 317

Query: 241 F---KPEASPLSVRLPIEYVPSTLEEPVGDHATGSRKRSKNRRKARKKLHVENQ 292
           F   KPEAS  S RLPIE VPST EEPVGD ATGS+KRSKN+RKARKKL +ENQ
Sbjct: 318 FRSIKPEASSPSERLPIESVPSTSEEPVGDRATGSKKRSKNKRKARKKLCMENQ 359

[Close]

BLAST of MS019137 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-22
Identity = 75/244 (30.74%), Postives = 121/244 (49.59%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           ++KS+L EYAQ+ ++P PVY+ V EG      ++STV++D V Y S   F NR+ AE  A
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  ARIALEYISKRTKDDGFLLLQ-EDLMFCKSILSEYTVKMNLKRPLYTTNHHD--GSVPIF 120
           A +AL  ++K ++    +     +   CK++L EY  KMN   PLY     +  G V  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 121 QSTLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGN--PESQKTLTKIIASKVRLH 180
             T+   G+ YTG  +R+KK+AE  A R A+L++  D  N        LT +   K  + 
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCEKKTIQ 194

Query: 181 ATLQKVKDSFPSQIQSKPMSEKSEQGHVGMTVNEDIYVENASLTDEVVSGAISEIPPTTS 240
           A +   +     + +     +K+++G   +  N +  +     TD   +   SE   TT 
Sbjct: 195 AAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPEDIIIPPQPTDHCQNDQ-SEKIETTP 254

[Close]

BLAST of MS019137 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-16
Identity = 62/207 (29.95%), Postives = 103/207 (49.76%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK+QL E AQRS   LP Y  + EG    P++++TV  +   + SP      R AEH A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  ARIALEYISKRTKDDGFL--LLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHD-GSVPIF 120
           A +AL  +S R         +L E  ++ K++L E   ++    P YTT     G  P+F
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVY-KNLLQEIAQRVGAPLPRYTTFRSGLGHQPVF 120

Query: 121 QSTLVFDGVVYTGNLSRSKKEAEQLAARAAILSL-------IGDAGNPESQKTLTKIIAS 180
             T+   G+ +TG+ +++KK+AE+ AA AA  SL             PE+   L ++I +
Sbjct: 121 TGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIA 180

Query: 181 KVRLHATLQKVKDSFPSQIQSKPMSEK 198
           +  ++  +++   +  S     P ++K
Sbjct: 181 RALINYRIKENIGTGSSSSAPVPFAKK 206

[Close]

BLAST of MS019137 vs. TAIR 10
Match: AT3G62800.1 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-15
Identity = 66/214 (30.84%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK QL  YA +  + LPVY    EG    P++R  V      + S   F   + AEH A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGS-VPIFQS 120
           A+IA+  ++ ++ +        D+ + K++L E   K +   P Y T     S  P F S
Sbjct: 64  AKIAVASLTPQSPEG------IDVAY-KNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 123

Query: 121 TLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQ 180
           T+ F G V++G  +++KK AE  AA+ A +S+     N     TL        R      
Sbjct: 124 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTL-----PSERQEDVNS 183

Query: 181 KVKDSFPSQIQSKPMSE---KSEQGHVGMTVNED 211
            VK S P +I S+P S+     +    G+ VNED
Sbjct: 184 NVKSS-PQEIHSQPSSKVVMTPDTPSKGIKVNED 204

[Close]

BLAST of MS019137 vs. TAIR 10
Match: AT3G62800.2 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-15
Identity = 66/214 (30.84%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK QL  YA +  + LPVY    EG    P++R  V      + S   F   + AEH A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGS-VPIFQS 120
           A+IA+  ++ ++ +        D+ + K++L E   K +   P Y T     S  P F S
Sbjct: 64  AKIAVASLTPQSPEG------IDVAY-KNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 123

Query: 121 TLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQ 180
           T+ F G V++G  +++KK AE  AA+ A +S+     N     TL        R      
Sbjct: 124 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTL-----PSERQEDVNS 183

Query: 181 KVKDSFPSQIQSKPMSE---KSEQGHVGMTVNED 211
            VK S P +I S+P S+     +    G+ VNED
Sbjct: 184 NVKSS-PQEIHSQPSSKVVMTPDTPSKGIKVNED 204

[Close]

BLAST of MS019137 vs. TAIR 10
Match: AT3G62800.3 (double-stranded-RNA-binding protein 4 )

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-15
Identity = 66/214 (30.84%), Postives = 99/214 (46.26%), Query Frame = 0


Query: 1   IYKSQLHEYAQRSRIPLPVYQTVIEGSIGLPKYRSTVLVDEVHYVSPNTFRNRRGAEHDA 60
           +YK QL  YA +  + LPVY    EG    P++R  V      + S   F   + AEH A
Sbjct: 4   VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query: 61  ARIALEYISKRTKDDGFLLLQEDLMFCKSILSEYTVKMNLKRPLYTTNHHDGS-VPIFQS 120
           A+IA+  ++ ++ +        D+ + K++L E   K +   P Y T     S  P F S
Sbjct: 64  AKIAVASLTPQSPEG------IDVAY-KNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 123

Query: 121 TLVFDGVVYTGNLSRSKKEAEQLAARAAILSLIGDAGNPESQKTLTKIIASKVRLHATLQ 180
           T+ F G V++G  +++KK AE  AA+ A +S+     N     TL        R      
Sbjct: 124 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTL-----PSERQEDVNS 183

Query: 181 KVKDSFPSQIQSKPMSE---KSEQGHVGMTVNED 211
            VK S P +I S+P S+     +    G+ VNED
Sbjct: 184 NVKSS-PQEIHSQPSSKVVMTPDTPSKGIKVNED 204

The following BLAST results are available for this feature:

BLAST of MS019137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143454.1	7.2e-158	100.00	double-stranded RNA-binding protein 4-like isoform X1 [Momordica charantia]	[more]
XP_022935532.1	2.3e-111	76.19	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata]	[more]
KAG6581214.1	1.9e-110	75.85	Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_038897078.1	5.6e-110	75.00	double-stranded RNA-binding protein 8-like isoform X1 [Benincasa hispida] >XP_03...	[more]
XP_038897098.1	5.6e-110	75.00	double-stranded RNA-binding protein 1-like isoform X2 [Benincasa hispida]	[more]

BLAST of MS019137 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6YW64	8.8e-26	32.02	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
O04492	5.0e-21	30.74	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE...	[more]
Q0DJA3	4.3e-20	31.77	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IV63	5.6e-20	28.05	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IQN6	1.2e-19	31.77	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of MS019137 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPC5	3.5e-158	100.00	double-stranded RNA-binding protein 4-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1F5U3	1.1e-111	76.19	double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1J9P9	3.5e-110	75.51	double-stranded RNA-binding protein 4-like isoform X3 OS=Cucurbita maxima OX=366...	[more]
A0A6J1J4E3	3.5e-110	75.51	double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1FAT0	1.2e-105	73.47	double-stranded RNA-binding protein 4-like isoform X2 OS=Cucurbita moschata OX=3...	[more]

BLAST of MS019137 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09700.1	3.6e-22	30.74	dsRNA-binding domain-like superfamily protein	[more]
AT2G28380.1	1.7e-16	29.95	dsRNA-binding protein 2	[more]
AT3G62800.1	7.2e-15	30.84	double-stranded-RNA-binding protein 4	[more]
AT3G62800.2	7.2e-15	30.84	double-stranded-RNA-binding protein 4	[more]
AT3G62800.3	7.2e-15	30.84	double-stranded-RNA-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 2..69 e-value: 1.5E-10 score: 51.1 coord: 87..152 e-value: 1.1E-9 score: 48.2
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 88..151 e-value: 1.4E-10 score: 41.8 coord: 2..67 e-value: 4.4E-8 score: 33.7
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 1..70 score: 10.970051
None	No IPR available	GENE3D	3.30.160.20		coord: 1..74 e-value: 4.3E-17 score: 63.5 coord: 79..155 e-value: 1.2E-17 score: 65.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..291
None	No IPR available	PANTHER	PTHR11207:SF26	DOUBLE-STRANDED RNA-BINDING PROTEIN 4	coord: 1..282
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 84..151
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 2..69
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019137.1	MS019137.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016075	rRNA catabolic process
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding