MS019134 (gene) Bitter gourd (TR) v1

Overview


Name	MS019134
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GPI-anchor transamidase isoform X1
Location	scaffold20: 1800938 .. 1801208 (+)
RNA-Seq Expression	MS019134
Synteny	MS019134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGGTGGGTGCTCTTCTCCTTTTTCAACCTGCATTGGGTTTTCTCGGAAGGTTCCAAACATAATGCAACTCCTATATGGTCCTCATCTTCCTCCGAAGGGCCTTTTGATTTGGGTTAACACGGTCATAGCAATTATGTCAAAACTTTGGTTTGAAACGAATCAAAGACTCTTTCATAACAAAAGCAAAGATTGGGTGAAATATTTTGAAGTAGCCAAGTTCGAAGCTTCTCTTTGGTGTTTTATTTTCCCGGTTTTCAAGAACTATACA

mRNA sequence

TGTTGGTGGGTGCTCTTCTCCTTTTTCAACCTGCATTGGGTTTTCCGGAAGGTTCCAAACATAATGCAACTCCTATATGGTCCTCATCTTCCTCCGAAGGGCCTTTTGATTTGGGTTAACACGGTCATAGCAATTATGTCAAAACTTTGGTTTGAAACGAATCAAAGACTCTTTCATAACAAAAGCAAAGATTGGGTGAAATATTTTGAAGTAGCCAAGTTCGAAGCTTCTCTTTGGTGTTTTATTTTCCCGGTTTTCAAGAACTATACA

Coding sequence (CDS)

TGTTGGTGGGTGCTCTTCTCCTTTTTCAACCTGCATTGGGTTTTCCGGAAGGTTCCAAACATAATGCAACTCCTATATGGTCCTCATCTTCCTCCGAAGGGCCTTTTGATTTGGGTTAACACGGTCATAGCAATTATGTCAAAACTTTGGTTTGAAACGAATCAAAGACTCTTTCATAACAAAAGCAAAGATTGGGTGAAATATTTTGAAGTAGCCAAGTTCGAAGCTTCTCTTTGGTGTTTTATTTTCCCGGTTTTCAAGAACTATACA

Protein sequence

CWWVLFSFFNLHWVFRKVPNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLFHNKSKDWVKYFEVAKFEASLWCFIFPVFKNYT

Homology

[Close]

BLAST of MS019134 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1   CWWVLFSFFNLHWVF--RKVPNIMQLLYG-PHLPPKGLLIWVNTVIAIMSKLWFETNQRL 60
           CW +LF  FN+ W F  +   N+ QLL+G PHL      +W+N V A++S+LWFE N RL
Sbjct: 96  CWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFERNSRL 155

Query: 61  FHNKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           F  K + + + F  AKF+ASLWC +   F +++
Sbjct: 156 FEEKRRLFDESFYSAKFKASLWCSLVDSFLHHS 188

[Close]

BLAST of MS019134 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 1   CWWVLFSFFNLHWVFRKV--PNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLF 60
           CW  L S F + W F      NI Q+L G  L     LIW N   A++S +WFE NQR+F
Sbjct: 595 CWENLLSLFGVDWAFDGSFNSNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIF 654

Query: 61  HNKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
             K   W +  ++AK  A+ WC +   F +Y+
Sbjct: 655 RGKVMHWSERLDIAKRNAATWCMLNKEFIDYS 686

[Close]

BLAST of MS019134 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-07
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 1   CWWVLFSFFNLHWVFRK--VPNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLF 60
           CW  L  FFNL          N+ QLL  P       L+W N V A+++ LWFE NQR+F
Sbjct: 211 CWNKLLCFFNLPLTLCNDFKSNVFQLLARPTSHKSTRLLWCNAVKALLADLWFERNQRIF 270

Query: 61  HNKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           +NK+       E A+ +AS WC +   F+ Y+
Sbjct: 271 YNKATSCQDRLEAARRQASSWCLLSDPFRAYS 302

[Close]

BLAST of MS019134 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-07
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 2   WWVLFSFFNLHWVFRK--VPNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLFH 61
           W  +FS FNL W F      +++QLL G +LP    +IW     A++ ++W E NQR+FH
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 62  NKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           +K++   +    A   A+ WC +   F NY+
Sbjct: 341 DKARQRAEIMHAADLNAAAWCSLRKEFVNYS 371

[Close]

BLAST of MS019134 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 6.1e-07
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 2   WWVLFSFFNLHWVFRK--VPNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLFH 61
           W  +FS FNL W F      +++QLL G +LP    +IW     A++ ++W E NQR+FH
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 62  NKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           +K++   +    A   A+ WC +   F NY+
Sbjct: 341 DKARQRAEIMHAADLNAAAWCSLRKEFVNYS 371

[Close]

BLAST of MS019134 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 1   CWWVLFSFFNLHWVF--RKVPNIMQLLYG-PHLPPKGLLIWVNTVIAIMSKLWFETNQRL 60
           CW +LF  FN+ W F  +   N+ QLL+G PHL      +W+N V A++S+LWFE N RL
Sbjct: 96  CWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFERNSRL 155

Query: 61  FHNKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           F  K + + + F  AKF+ASLWC +   F +++
Sbjct: 156 FEEKRRLFDESFYSAKFKASLWCSLVDSFLHHS 188

[Close]

BLAST of MS019134 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 1   CWWVLFSFFNLHWVFRKV--PNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLF 60
           CW  L S F + W F      NI Q+L G  L     LIW N   A++S +WFE NQR+F
Sbjct: 595 CWENLLSLFGVDWAFDGSFNSNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIF 654

Query: 61  HNKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
             K   W +  ++AK  A+ WC +   F +Y+
Sbjct: 655 RGKVMHWSERLDIAKRNAATWCMLNKEFIDYS 686

[Close]

BLAST of MS019134 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 2   WWVLFSFFNLHWVFRK--VPNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLFH 61
           W  +FS FNL W F      +++QLL G +LP    +IW     A++ ++W E NQR+FH
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 62  NKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           +K++   +    A   A+ WC +   F NY+
Sbjct: 341 DKARQRAEIMHAADLNAAAWCSLRKEFVNYS 371

[Close]

BLAST of MS019134 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 2   WWVLFSFFNLHWVFRK--VPNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLFH 61
           W  +FS FNL W F      +++QLL G +LP    +IW     A++ ++W E NQR+FH
Sbjct: 281 WERIFSLFNLVWNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFH 340

Query: 62  NKSKDWVKYFEVAKFEASLWCFIFPVFKNYT 91
           +K++   +    A   A+ WC +   F NY+
Sbjct: 341 DKARQRAEIMHAADLNAAAWCSLRKEFVNYS 371

[Close]

BLAST of MS019134 vs. ExPASy TrEMBL
Match: A0A5D3DC06 (Mediator of RNA polymerase II transcription subunit 8 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00890 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.7e-05
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 19  PNIMQLLYGPHLPPKGLLIWVNTVIAIMSKLWFETNQRLFHNKSKDWVKYFEVAKFEASL 78
           P   +L  GP LP K  LIW+N   A++S+LWFE NQ +FH K K  ++    AK  A +
Sbjct: 163 PLCQKLPEGPPLPKKPRLIWLNLSKALLSELWFERNQHIFHGKEKPRLEILLSAKQNAVV 222

Query: 79  -WCFIFPVFKNYT 91
            WC +   F +Y+
Sbjct: 223 AWCSLNKEFGDYS 235

The following BLAST results are available for this feature:

BLAST of MS019134 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153214.1	3.1e-11	43.01	uncharacterized protein LOC111020765 [Momordica charantia]	[more]
KAA0062564.1	4.2e-08	38.04	GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038903695.1	2.7e-07	38.04	uncharacterized protein LOC120090219 [Benincasa hispida]	[more]
KAA0035739.1	6.1e-07	35.16	hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa]	[more]
TYK21876.1	6.1e-07	35.16	hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa]	[more]

BLAST of MS019134 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIE2	1.5e-11	43.01	uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5A7V5N8	2.0e-08	38.04	GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5A7T2Y0	3.0e-07	35.16	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3DE60	3.0e-07	35.16	zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3DC06	4.7e-05	41.10	Mediator of RNA polymerase II transcription subunit 8 isoform X2 OS=Cucumis melo...	[more]

BLAST of MS019134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019134.1	MS019134.1	mRNA