MS019123 (gene) Bitter gourd (TR) v1

Overview
NameMS019123
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold20: 1700095 .. 1700410 (-)
RNA-Seq ExpressionMS019123
SyntenyMS019123
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCAGAATGGGCAACTTTATCAGCCCTACTGTCCTCCTTTACTCCATCAAATAGAGTGAATTTATGGCTATGGAACCTGAAGAAACATGGCAGCTTCACAGCAAAATCATTGACTCAAAACCTTCCAACATTTTCGGTTTCCTCCACTGATAACCGCAATAAATCCATTTGGAAGATAAGGTCCATTTGGAAGGCCATGTATCCAAATAAGGTCAAGTTCCTAATCTGGGAATTAAGTCACTCTTGCCTCAATACTTTTGACAAACGGATGCCCCTAATGGTCTATTTCTCCCACTTGGTGCTGCTTATGCAAA

mRNA sequence

ATTGCAGAATGGGCAACTTTATCAGCCCTACTGTCCTCCTTTACTCCATCAAATAGAGTGAATTTATGGCTATGGAACCTGAAGAAACATGGCAGCTTCACAGCAAAATCATTGACTCAAAACCTTCCAACATTTTCGGTTTCCTCCACTGATAACCGCAATAAATCCATTTGGAAGATAAGGTCCATTTGGAAGGCCATGTATCCAAATAAGGTCAAGTTCCTAATCTGGGAATTAAGTCACTCTTGCCTCAATACTTTTGACAAACGGATGCCCCTAATGATTTCTCCCACTTGGTGCTGCTTATGCAAA

Coding sequence (CDS)

ATTGCAGAATGGGCAACTTTATCAGCCCTACTGTCCTCCTTTACTCCATCAAATAGAGTGAATTTATGGCTATGGAACCTGAAGAAACATGGCAGCTTCACAGCAAAATCATTGACTCAAAACCTTCCAACATTTTCGGTTTCCTCCACTGATAACCGCAATAAATCCATTTGGAAGATAAGGTCCATTTGGAAGGCCATGTATCCAAATAAGGTCAAGTTCCTAATCTGGGAATTAAGTCACTCTTGCCTCAATACTTTTGACAAACGGATGCCCCTAATGATTTCTCCCACTTGGTGCTGCTTATGCAAA

Protein sequence

IAEWATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSIWKAMYPNKVKFLIWELSHSCLNTFDKRMPLMISPTWCCLCK
Homology
[Close]
BLAST of MS019123 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-07
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P    +  LW L  +  F   S+ ++L   S S T N + S++K  ++
Sbjct: 721 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYK--TL 780

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 781 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 821

[Close]
BLAST of MS019123 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-07
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P    +  LW L  +  F   S+ ++L   S S T N + S++K  ++
Sbjct: 815 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYK--TL 874

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 875 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 915

[Close]
BLAST of MS019123 vs. NCBI nr
Match: XP_031744692.1 (uncharacterized protein LOC116405125 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0 

Query: 25  WNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSIWKAMYPNKVKFLIWELSHSCL 84
           W L  +GSFT  S+    P  +   T+  +  I+   ++WK+  P + KF +W L H C+
Sbjct: 102 WTLNNNGSFTVASIKLARPLNNQDETNEDDGEIY--NNLWKSTIPKRCKFFVWTLLHECI 161

Query: 85  NTFD---KRMPLM-ISPTWCCLCK 105
           NT D   +R+P   + P+WC LCK
Sbjct: 162 NTMDMLQRRLPTWNLKPSWCILCK 183

[Close]
BLAST of MS019123 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P+  +   LW L  +  F   S+ + L    VS   N + +++K  ++
Sbjct: 266 WHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPA-NFHPNLYK--TL 325

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 326 WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC 366

[Close]
BLAST of MS019123 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P+  +   LW L  +  F   S+ + L    VS   N + +++K  ++
Sbjct: 223 WHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPA-NFHPNLYK--TL 282

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 283 WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC 323

[Close]
BLAST of MS019123 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P    +  LW L  +  F   S+ ++L   S S T N + S++K  ++
Sbjct: 815 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYK--TL 874

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 875 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 915

[Close]
BLAST of MS019123 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P    +  LW L  +  F   S+ ++L   S S T N + S++K  ++
Sbjct: 721 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPT-NFHPSLYK--TL 780

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 781 WKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 821

[Close]
BLAST of MS019123 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 0 

Query: 4    WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
            W  + A L +  P+      LWNL  +  F   S+ + +    +S   N + +++K  ++
Sbjct: 923  WHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPA-NFHPNLYK--TL 982

Query: 64   WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
            WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 983  WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 1023

[Close]
BLAST of MS019123 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P+  +   LW L  +  F   S+ + L    VS   N + +++K  ++
Sbjct: 266 WHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPA-NFHPNLYK--TL 325

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 326 WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC 366

[Close]
BLAST of MS019123 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 36/104 (34.62%), Postives = 54/104 (51.92%), Query Frame = 0 

Query: 4   WATLSALLSSFTPSNRVNLWLWNLKKHGSFTAKSLTQNLPTFSVSSTDNRNKSIWKIRSI 63
           W  + A L +  P+  +   LW L  +  F   S+ + L    VS   N + +++K  ++
Sbjct: 223 WHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTASVKKILSEAPVSPA-NFHPNLYK--TL 282

Query: 64  WKAMYPNKVKFLIWELSHSCLNTFD---KRMP-LMISPTWCCLC 104
           WK  +P K KF IW L H C+NT D   KR+P   +SP WC +C
Sbjct: 283 WKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMC 323

The following BLAST results are available for this feature:
BLAST of MS019123 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044556.14.1e-0736.54LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.14.1e-0736.54LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_031744692.12.1e-0635.71uncharacterized protein LOC116405125 [Cucumis sativus][more]
KAA0044451.11.0e-0534.62LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK29578.11.0e-0534.62LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of MS019123 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS019123 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIB82.0e-0736.54LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR152.0e-0736.54LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I74.9e-0633.65LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA74.9e-0634.62LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3E1E34.9e-0634.62LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MS019123 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019123.1MS019123.1mRNA