MS019100 (gene) Bitter gourd (TR) v1

Overview


Name	MS019100
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	agamous-like MADS-box protein AGL14
Location	scaffold20: 1480877 .. 1481332 (+)
RNA-Seq Expression	MS019100
Synteny	MS019100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGAGGAAAATTGAGCCTGAAGCTGATTTCGTCTCACAAATCTCGCACTGCAACATTCCGCAAGAGAACCAAGAGTTTGATGAAGAAAGCCTTCGAGCTATCCACGCTCTGCGATGTCCGGACCTGCGTTTTGATCCATGGCCCTGCTCCTCCACAAGATGGTGATCGCTCGGCAGTGGAATCCCACACTTGGCCTCCCAATCGCGAAGAAATCGAAGGTATTATCCGGGCCTATAAGACTAATTATTTGCGGAAACCATCGATGAAGTCTTTTGGTTTGTATGATTTTTTCTCGGATCGTATGAAGAAAATCGAAAAAGAGAGGGCTAAATTTAGTGAAGAAATCAAGTATGCGGGGTGGGACGAGCGGCTTAATTGTTTATCCGAACAGCAGCTGCGGTTGTTTATGGATAATTTGGGTTCGAAGATTGAAGCTGCAGAGGGAATGATT

mRNA sequence

ATGGGCAGAGGAAAATTGAGCCTGAAGCTGATTTCGTCTCACAAATCTCGCACTGCAACATTCCGCAAGAGAACCAAGAGTTTGATGAAGAAAGCCTTCGAGCTATCCACGCTCTGCGATGTCCGGACCTGCGTTTTGATCCATGGCCCTGCTCCTCCACAAGATGGTGATCGCTCGGCAGTGGAATCCCACACTTGGCCTCCCAATCGCGAAGAAATCGAAGGTATTATCCGGGCCTATAAGACTAATTATTTGCGGAAACCATCGATGAAGTCTTTTGGTTTGTATGATTTTTTCTCGGATCGTATGAAGAAAATCGAAAAAGAGAGGGCTAAATTTAGTGAAGAAATCAAGTATGCGGGGTGGGACGAGCGGCTTAATTGTTTATCCGAACAGCAGCTGCGGTTGTTTATGGATAATTTGGGTTCGAAGATTGAAGCTGCAGAGGGAATGATT

Coding sequence (CDS)

ATGGGCAGAGGAAAATTGAGCCTGAAGCTGATTTCGTCTCACAAATCTCGCACTGCAACATTCCGCAAGAGAACCAAGAGTTTGATGAAGAAAGCCTTCGAGCTATCCACGCTCTGCGATGTCCGGACCTGCGTTTTGATCCATGGCCCTGCTCCTCCACAAGATGGTGATCGCTCGGCAGTGGAATCCCACACTTGGCCTCCCAATCGCGAAGAAATCGAAGGTATTATCCGGGCCTATAAGACTAATTATTTGCGGAAACCATCGATGAAGTCTTTTGGTTTGTATGATTTTTTCTCGGATCGTATGAAGAAAATCGAAAAAGAGAGGGCTAAATTTAGTGAAGAAATCAAGTATGCGGGGTGGGACGAGCGGCTTAATTGTTTATCCGAACAGCAGCTGCGGTTGTTTATGGATAATTTGGGTTCGAAGATTGAAGCTGCAGAGGGAATGATT

Protein sequence

MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKERAKFSEEIKYAGWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI

Homology

[Close]

BLAST of MS019100 vs. NCBI nr
Match: XP_022143403.1 (uncharacterized protein LOC111013282 [Momordica charantia])

HSP 1 Score: 301.6 bits (771), Expect = 3.8e-78
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSA 60
           MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRS 
Sbjct: 1   MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSV 60

Query: 61  VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKERAKFSEEIKYA 120
           VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFS RMKKIEKERAKFSEEIKYA
Sbjct: 61  VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSGRMKKIEKERAKFSEEIKYA 120

Query: 121 GWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI 153
           GWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI
Sbjct: 121 GWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI 152

[Close]

BLAST of MS019100 vs. NCBI nr
Match: XP_022143271.1 (uncharacterized protein LOC111013182 isoform X1 [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 5.4e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. NCBI nr
Match: XP_022143272.1 (uncharacterized protein LOC111013182 isoform X2 [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 5.4e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. NCBI nr
Match: XP_022143273.1 (uncharacterized protein LOC111013182 isoform X3 [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 5.4e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. NCBI nr
Match: XP_022143274.1 (uncharacterized protein LOC111013182 isoform X4 [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 5.4e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.9e-13
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 6   LSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHT 65
           + L+ I++ K+R  T++KR  SL KKA E STLC V TC++++GP    D   S  E   
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVIS--EPEI 65

Query: 66  WPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMK---KIEKERAKFSEEIKYAGW 125
           WP +  ++  IIR YK + +     K   +  F +D  K    + K+R K   E KY+ W
Sbjct: 66  WPKDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVK--RENKYSSW 125

Query: 126 DERLNCLSEQQLRLFMDNLGSKIEAA 149
           +E+L+  S +QL      + SK+  A
Sbjct: 126 EEKLDKCSREQLHGIFCAVDSKLNEA 146

[Close]

BLAST of MS019100 vs. ExPASy Swiss-Prot
Match: Q9LSB2 (Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-09
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 16  SRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEG 75
           SR  +  KR +++ KKA ELS LCD+  CV+ +G         S  E  TWP  RE+++ 
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYG---------SNGELKTWPEEREKVKA 90

Query: 76  IIRAYKTNYLRKPSMKSFGLYDFF----SDRMKKIEKERAKFSE--EIKYAGWDERLNCL 135
           I R Y      K    S  L++F      D  +K EK++ K     ++KY  WD R +  
Sbjct: 91  IARRYGELSETKRRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRRVPKVKYPVWDPRFDNY 150

Query: 136 SEQQLRLFMDNL 142
           S +QL   + +L
Sbjct: 151 SVEQLMGLVQSL 153

[Close]

BLAST of MS019100 vs. ExPASy Swiss-Prot
Match: Q9FIX0 (Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana OX=3702 GN=AGL81 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.8e-09
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 0


Query: 12  SSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNRE 71
           SS+   + +   R +++ KKA EL TLCD+  CV+ +GP    DG     E  TWPP RE
Sbjct: 19  SSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGP----DG-----ELKTWPPERE 78

Query: 72  EIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKERAKFSEEIKYAGWDERLNCL 130
           ++E I   Y          KS  LYDF + +     K++    ++ K    D+   CL
Sbjct: 79  KVEDIALRYSQLNEALRRKKSVTLYDFLNKK-----KDKTNLEKKAKITDNDDLKTCL 122

[Close]

BLAST of MS019100 vs. ExPASy Swiss-Prot
Match: Q9FJK3 (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-07
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 0


Query: 1  MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSA 60
          M R K+ L  IS+  SR ATF+KR K LMKK  ELSTLC +  C +I+ P          
Sbjct: 1  MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYD-------- 60

Query: 61 VESHTWPPNREEIEGIIRAYKT 83
               WP N   ++ ++  ++T
Sbjct: 61 TNPEVWPSN-SGVQRVVSEFRT 73

[Close]

BLAST of MS019100 vs. ExPASy Swiss-Prot
Match: Q38694 (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLI 48
          MGRG++ LK+I +  +R  TF KR K L+KKA+ELS LCD    ++I
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALII 47

[Close]

BLAST of MS019100 vs. ExPASy TrEMBL
Match: A0A6J1CQM2 (uncharacterized protein LOC111013282 OS=Momordica charantia OX=3673 GN=LOC111013282 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSA 60
           MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRS 
Sbjct: 1   MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSV 60

Query: 61  VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKERAKFSEEIKYA 120
           VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFS RMKKIEKERAKFSEEIKYA
Sbjct: 61  VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSGRMKKIEKERAKFSEEIKYA 120

Query: 121 GWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI 153
           GWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI
Sbjct: 121 GWDERLNCLSEQQLRLFMDNLGSKIEAAEGMI 152

[Close]

BLAST of MS019100 vs. ExPASy TrEMBL
Match: A0A6J1CQB5 (uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. ExPASy TrEMBL
Match: A0A6J1CQB2 (uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. ExPASy TrEMBL
Match: A0A6J1CNU9 (uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. ExPASy TrEMBL
Match: A0A6J1CPS5 (uncharacterized protein LOC111013182 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013182 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.6e-48
Identity = 101/127 (79.53%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 29  MKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEGIIRAYKTNYLRKP 88
           MKKAFELSTLCDVRTCVLIHGPAPPQDGD SAVESHTWP NREEIEGIIRAYKT+Y +KP
Sbjct: 1   MKKAFELSTLCDVRTCVLIHGPAPPQDGDCSAVESHTWPLNREEIEGIIRAYKTSYFQKP 60

Query: 89  SMKSFGLYDFFSDRMKKIEKERAKF---SEEIKYAGWDERLNCLSEQQLRLFMDNLGSKI 148
            MKSF LY +FSDRMKKIE ERAKF   +E+IK   WDERL CLS  QLRL M++LGSK 
Sbjct: 61  LMKSFDLYGYFSDRMKKIEAERAKFRNDAEDIKCPSWDERLECLSGHQLRLVMEDLGSKS 120

Query: 149 EAAEGMI 153
           E AEGMI
Sbjct: 121 EVAEGMI 127

[Close]

BLAST of MS019100 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-14
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 0


Query: 6   LSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHT 65
           + L+ I++ K+R  T++KR  SL KKA E STLC V TC++++GP    D   S  E   
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVIS--EPEI 65

Query: 66  WPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMK---KIEKERAKFSEEIKYAGW 125
           WP +  ++  IIR YK + +     K   +  F +D  K    + K+R K   E KY+ W
Sbjct: 66  WPKDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKKRVK--RENKYSSW 125

Query: 126 DERLNCLSEQQLRLFMDNLGSKIEAA 149
           +E+L+  S +QL      + SK+  A
Sbjct: 126 EEKLDKCSREQLHGIFCAVDSKLNEA 146

[Close]

BLAST of MS019100 vs. TAIR 10
Match: AT5G55690.1 (MADS-box transcription factor family protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-13
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 0


Query: 1   MGRGKLSLKLISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSA 60
           MGR  + +  I++ K+R  T++KR   L KKA E STLC V TCV+++GP+  + GD   
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPS--RAGDEMV 60

Query: 61  VESHTWPPNREEIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKERAKFSEEIKYA 120
           +E   WP +  ++  I+  Y+ +       K++ + +       K+EK     +   KY 
Sbjct: 61  MEPELWPKDGSKVREILTKYR-DTASSSCTKTYTVQECLEKNNTKVEKP----TIATKYP 120

Query: 121 GWDERLNCLSEQQLRLFMDNLGSKIEAA 149
            WD++L+  S   L      + +KI+ A
Sbjct: 121 TWDKKLDQCSLNDLYAVFMAVENKIQEA 141

[Close]

BLAST of MS019100 vs. TAIR 10
Match: AT3G18650.1 (AGAMOUS-like 103 )

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-10
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0


Query: 16  SRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNREEIEG 75
           SR  +  KR +++ KKA ELS LCD+  CV+ +G         S  E  TWP  RE+++ 
Sbjct: 31  SRATSLIKRQQTVFKKAKELSILCDIDVCVICYG---------SNGELKTWPEEREKVKA 90

Query: 76  IIRAYKTNYLRKPSMKSFGLYDFF----SDRMKKIEKERAKFSE--EIKYAGWDERLNCL 135
           I R Y      K    S  L++F      D  +K EK++ K     ++KY  WD R +  
Sbjct: 91  IARRYGELSETKRRKGSVDLHEFLEKMNKDDPEKEEKKKIKVRRVPKVKYPVWDPRFDNY 150

Query: 136 SEQQLRLFMDNL 142
           S +QL   + +L
Sbjct: 151 SVEQLMGLVQSL 153

[Close]

BLAST of MS019100 vs. TAIR 10
Match: AT5G39750.1 (AGAMOUS-like 81 )

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-10
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 0


Query: 12  SSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNRE 71
           SS+   + +   R +++ KKA EL TLCD+  CV+ +GP    DG     E  TWPP RE
Sbjct: 19  SSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGP----DG-----ELKTWPPERE 78

Query: 72  EIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKERAKFSEEIKYAGWDERLNCL 130
           ++E I   Y          KS  LYDF + +     K++    ++ K    D+   CL
Sbjct: 79  KVEDIALRYSQLNEALRRKKSVTLYDFLNKK-----KDKTNLEKKAKITDNDDLKTCL 122

[Close]

BLAST of MS019100 vs. TAIR 10
Match: AT5G39810.1 (AGAMOUS-like 98 )

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-09
Identity = 35/99 (35.35%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 12  SSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGPAPPQDGDRSAVESHTWPPNRE 71
           SS+   + +   R +++ +KA EL TLCD+  CV+ +GP    DG     E  TWPP RE
Sbjct: 19  SSYSLASTSLSNRLETIFRKASELCTLCDIEACVIYYGP----DG-----ELKTWPPERE 78

Query: 72  EIEGIIRAYKTNYLRKPSMKSFGLYDFFSDRMKKIEKER 111
           ++E I   Y          KS  LYDF + +  K   E+
Sbjct: 79  KVEDIALRYSQLNEALRRKKSVTLYDFLNKKKNKTNLEK 108

The following BLAST results are available for this feature:

BLAST of MS019100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143403.1	3.8e-78	98.68	uncharacterized protein LOC111013282 [Momordica charantia]	[more]
XP_022143271.1	5.4e-48	79.53	uncharacterized protein LOC111013182 isoform X1 [Momordica charantia]	[more]
XP_022143272.1	5.4e-48	79.53	uncharacterized protein LOC111013182 isoform X2 [Momordica charantia]	[more]
XP_022143273.1	5.4e-48	79.53	uncharacterized protein LOC111013182 isoform X3 [Momordica charantia]	[more]
XP_022143274.1	5.4e-48	79.53	uncharacterized protein LOC111013182 isoform X4 [Momordica charantia]	[more]

BLAST of MS019100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	5.9e-13	34.93	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
Q9LSB2	6.7e-09	33.33	Agamous-like MADS-box protein AGL103 OS=Arabidopsis thaliana OX=3702 GN=AGL103 P...	[more]
Q9FIX0	8.8e-09	33.05	Agamous-like MADS-box protein AGL81 OS=Arabidopsis thaliana OX=3702 GN=AGL81 PE=...	[more]
Q9FJK3	8.2e-07	37.80	Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=...	[more]
Q38694	1.5e-05	51.06	Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1	[more]

BLAST of MS019100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQM2	1.9e-78	98.68	uncharacterized protein LOC111013282 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CQB5	2.6e-48	79.53	uncharacterized protein LOC111013182 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQB2	2.6e-48	79.53	uncharacterized protein LOC111013182 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CNU9	2.6e-48	79.53	uncharacterized protein LOC111013182 isoform X4 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CPS5	2.6e-48	79.53	uncharacterized protein LOC111013182 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of MS019100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58890.1	4.2e-14	34.93	AGAMOUS-like 82	[more]
AT5G55690.1	4.6e-13	30.41	MADS-box transcription factor family protein	[more]
AT3G18650.1	4.8e-10	33.33	AGAMOUS-like 103	[more]
AT5G39750.1	6.2e-10	33.05	AGAMOUS-like 81	[more]
AT5G39810.1	3.1e-09	35.35	AGAMOUS-like 98	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..116
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 3..151
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..151
None	No IPR available	CDD	cd00120	MADS	coord: 2..50 e-value: 2.59788E-18 score: 71.7762
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 23..38 score: 61.18 coord: 3..23 score: 40.26
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..65 e-value: 1.8E-12 score: 57.4
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..50 e-value: 2.6E-14 score: 52.5
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..47 score: 17.072348
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 14..120 e-value: 2.8E-14 score: 55.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019100.1	MS019100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity