MS019094 (gene) Bitter gourd (TR) v1

Overview
NameMS019094
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H-like superfamily protein
Locationscaffold20: 1417039 .. 1417219 (-)
RNA-Seq ExpressionMS019094
SyntenyMS019094
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGATTTCACCTCCAATGCATACTTGGTCTTTAAATTCAGACGCCTCTTGGTCAGAAGCTCAGCAAATCGCAGGATTGGGGTGGGATTTTGAGAGATTGGAAGGGCGAAATCATCCTCGCCGGCAACAAAATGGTGACCAATTGTGGTAGCATCAAGAAATTGGAAGCGGGAGCAGTTCTC

mRNA sequence

TGGATTTCACCTCCAATGCATACTTGGTCTTTAAATTCAGACGCCTCTTGGTCAGAAGCTCAGCAAATCGCAGGATTGGGGTGGTTGAGAGATTGGAAGGGCGAAATCATCCTCGCCGGCAACAAAATGGTGACCAATTGTGGTAGCATCAAGAAATTGGAAGCGGGAGCAGTTCTC

Coding sequence (CDS)

TGGATTTCACCTCCAATGCATACTTGGTCTTTAAATTCAGACGCCTCTTGGTCAGAAGCTCAGCAAATCGCAGGATTGGGGTGGTTGAGAGATTGGAAGGGCGAAATCATCCTCGCCGGCAACAAAATGGTGACCAATTGTGGTAGCATCAAGAAATTGGAAGCGGGAGCAGTTCTC

Protein sequence

WISPPMHTWSLNSDASWSEAQQIAGLGWLRDWKGEIILAGNKMVTNCGSIKKLEAGAVL
Homology
BLAST of MS019094 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 7.0e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1   WISPPMHTWSLNSDASWSEAQQIAGLGW-LRDWKGEIILAGNKMVTNCGSIKKLEAGAVL 60
           W  PPMH W+LN+DASWS++    G+GW +R W G+I+LAGN+ V  C ++K LEA A+L
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

BLAST of MS019094 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 1   WISPPMHTWSLNSDASWSEAQQIAGLGW-LRDWKGEIILAGNKMVTNCGSIKKLEAGAVL 60
           W +PP + W LN+DASWSE +++ G+GW L D +GEI+LAGN  +     I  LE   ++
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTII 164

BLAST of MS019094 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1   WISPPMHTWSLNSDASWSEAQQIAGLGW-LRDWKGEIILAGNKMVTNCGSIKKLEAGAVL 60
           W  PPMH W+LN+DASWS++    G+GW +R W G+I+LAGN+ V  C ++K LEA A+L
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

BLAST of MS019094 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 1   WISPPMHTWSLNSDASWSEAQQIAGLGW-LRDWKGEIILAGNKMVTNCGSIKKLEAGAVL 60
           W +PP + W LN+DASWSE +++ G+GW L D +GEI+LAGN  +     I  LE   ++
Sbjct: 105 WSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTII 164

BLAST of MS019094 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 3.4e-04
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 0

Query: 4   PPMHTW-SLNSDASWSEAQQIAGLGW-LRDWKGEIILAGNKMVTNCGSIKKLEAGAV 59
           PP H W   N+DA+W+   +  G+GW LR+ KGE+   G + +    S+ + E  A+
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAM 478

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.17.0e-1253.33uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143317.18.9e-0745.00uncharacterized protein LOC111013216 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV93.4e-1253.33uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CQG04.3e-0745.00uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
Match NameE-valueIdentityDescription
AT4G29090.13.4e-0435.09Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS019094.1MS019094.1mRNA