MS019081 (gene) Bitter gourd (TR) v1

Overview


Name	MS019081
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function, DUF547
Location	scaffold20: 1256855 .. 1257142 (+)
RNA-Seq Expression	MS019081
Synteny	MS019081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTCTTGTCAAGCAACTTGCAAAAGTGTATCCCATTCATTTAAACAATGATGAAAGGTTAGGCTTCTGGATTAACTTATATAATGCACCGATCATGCATGTGAGTGCCTTCTCTTTGTTAAATTTGCTTTGGTACATGGCTAGCTAACTTTAAGAGTATATTTGTAAAATACAGAGAAACAAACAGAGGATAAGTTGGGTAGTTCACATCTTATCTGACTTTTGGCAGGCTCACCTGGCTTATGGAGTTCCGAAAAGTGAATTGAAAATTTTCTCTTTGGTGCACAAG

mRNA sequence

ACTCTTGTCAAGCAACTTGCAAAAGTGTATCCCATTCATTTAAACAATGATGAAAGGTTAGGCTTCTGGATTAACTTATATAATGCACCGATCATGCATGCTCACCTGGCTTATGGAGTTCCGAAAAGTGAATTGAAAATTTTCTCTTTGGTGCACAAG

Coding sequence (CDS)

ACTCTTGTCAAGCAACTTGCAAAAGTGTATCCCATTCATTTAAACAATGATGAAAGGTTAGGCTTCTGGATTAACTTATATAATGCACCGATCATGCATGCTCACCTGGCTTATGGAGTTCCGAAAAGTGAATTGAAAATTTTCTCTTTGGTGCACAAG

Protein sequence

TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK

Homology

[Close]

BLAST of MS019081 vs. NCBI nr
Match: XP_022143425.1 (uncharacterized protein LOC111013303 isoform X2 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN+DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 335 TLVEQLAKVNPIHLNSDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 387

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BLAST of MS019081 vs. NCBI nr
Match: XP_022143423.1 (uncharacterized protein LOC111013303 isoform X1 [Momordica charantia] >XP_022143424.1 uncharacterized protein LOC111013303 isoform X1 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN+DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 336 TLVEQLAKVNPIHLNSDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 388

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BLAST of MS019081 vs. NCBI nr
Match: XP_022143426.1 (uncharacterized protein LOC111013303 isoform X3 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.2e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN+DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 293 TLVEQLAKVNPIHLNSDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 345

[Close]

BLAST of MS019081 vs. NCBI nr
Match: XP_022982724.1 (uncharacterized protein LOC111481508 [Cucurbita maxima] >XP_022982725.1 uncharacterized protein LOC111481508 [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 328 TLVEQLAKVNPIHLNRDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 380

[Close]

BLAST of MS019081 vs. NCBI nr
Match: XP_011651226.1 (uncharacterized protein LOC101204212 isoform X2 [Cucumis sativus] >KGN57481.1 hypothetical protein Csa_011214 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 334 TLVEQLAKVNPIHLNRDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 386

[Close]

BLAST of MS019081 vs. ExPASy TrEMBL
Match: A0A6J1CP97 (uncharacterized protein LOC111013303 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013303 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN+DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 336 TLVEQLAKVNPIHLNSDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 388

[Close]

BLAST of MS019081 vs. ExPASy TrEMBL
Match: A0A6J1CQ78 (uncharacterized protein LOC111013303 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111013303 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN+DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 293 TLVEQLAKVNPIHLNSDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 345

[Close]

BLAST of MS019081 vs. ExPASy TrEMBL
Match: A0A6J1CNS4 (uncharacterized protein LOC111013303 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013303 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN+DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 335 TLVEQLAKVNPIHLNSDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 387

[Close]

BLAST of MS019081 vs. ExPASy TrEMBL
Match: A0A6J1J3M6 (uncharacterized protein LOC111481508 OS=Cucurbita maxima OX=3661 GN=LOC111481508 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 328 TLVEQLAKVNPIHLNRDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 380

[Close]

BLAST of MS019081 vs. ExPASy TrEMBL
Match: A0A1S3C3C3 (uncharacterized protein LOC103496201 OS=Cucumis melo OX=3656 GN=LOC103496201 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLAKV PIHLN DERL FWINLYNA IMHA+LAYGVPKSELK+FSL+ K
Sbjct: 334 TLVEQLAKVNPIHLNRDERLAFWINLYNALIMHAYLAYGVPKSELKLFSLMQK 386

[Close]

BLAST of MS019081 vs. TAIR 10
Match: AT3G13000.2 (Protein of unknown function, DUF547 )

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-17
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLA+V PIHL+ +E+L FWINLYNA IMHA+LAYGVPKS+LK+FSL+ K
Sbjct: 353 TLVEQLARVNPIHLSCNEKLAFWINLYNALIMHAYLAYGVPKSDLKLFSLMQK 405

[Close]

BLAST of MS019081 vs. TAIR 10
Match: AT3G13000.1 (Protein of unknown function, DUF547 )

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-17
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           TLV+QLA+V PIHL+ +E+L FWINLYNA IMHA+LAYGVPKS+LK+FSL+ K
Sbjct: 324 TLVEQLARVNPIHLSCNEKLAFWINLYNALIMHAYLAYGVPKSDLKLFSLMQK 376

[Close]

BLAST of MS019081 vs. TAIR 10
Match: AT1G16750.1 (Protein of unknown function, DUF547 )

HSP 1 Score: 77.0 bits (188), Expect = 5.0e-15
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 2   LVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           LV++LA+V P  L+++E+L FWIN+YNA IMHA+LAYGVPK++LK+FSL+ K
Sbjct: 304 LVERLARVNPAELSHNEKLAFWINIYNAMIMHAYLAYGVPKTDLKLFSLMQK 355

[Close]

BLAST of MS019081 vs. TAIR 10
Match: AT5G47380.1 (Protein of unknown function, DUF547 )

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-09
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 2   LVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           LV+QL +V    +  + +L FWIN+YNA +MHA+LAYGVP   L+  +L HK
Sbjct: 362 LVEQLERVTINQMEGNAKLAFWINIYNALLMHAYLAYGVPAHSLRRLALFHK 413

[Close]

BLAST of MS019081 vs. TAIR 10
Match: AT5G66600.1 (Protein of unknown function, DUF547 )

HSP 1 Score: 56.6 bits (135), Expect = 7.0e-09
Identity = 24/53 (45.28%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1   TLVKQLAKVYPIHLNNDERLGFWINLYNAPIMHAHLAYGVPKSELKIFSLVHK 54
           +L+ +L +V P  L ++E+L FWIN++NA +MHA LAYG+P++ +K   L+ K
Sbjct: 390 SLISRLEEVDPRKLKHEEKLAFWINVHNALVMHAFLAYGIPQNNVKRVLLLLK 442

The following BLAST results are available for this feature:

BLAST of MS019081 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143425.1	3.2e-16	83.02	uncharacterized protein LOC111013303 isoform X2 [Momordica charantia]	[more]
XP_022143423.1	3.2e-16	83.02	uncharacterized protein LOC111013303 isoform X1 [Momordica charantia] >XP_022143...	[more]
XP_022143426.1	3.2e-16	83.02	uncharacterized protein LOC111013303 isoform X3 [Momordica charantia]	[more]
XP_022982724.1	4.2e-16	83.02	uncharacterized protein LOC111481508 [Cucurbita maxima] >XP_022982725.1 uncharac...	[more]
XP_011651226.1	4.2e-16	83.02	uncharacterized protein LOC101204212 isoform X2 [Cucumis sativus] >KGN57481.1 hy...	[more]

BLAST of MS019081 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP97	1.6e-16	83.02	uncharacterized protein LOC111013303 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CQ78	1.6e-16	83.02	uncharacterized protein LOC111013303 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CNS4	1.6e-16	83.02	uncharacterized protein LOC111013303 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1J3M6	2.0e-16	83.02	uncharacterized protein LOC111481508 OS=Cucurbita maxima OX=3661 GN=LOC111481508...	[more]
A0A1S3C3C3	2.0e-16	83.02	uncharacterized protein LOC103496201 OS=Cucumis melo OX=3656 GN=LOC103496201 PE=...	[more]

BLAST of MS019081 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13000.2	1.4e-17	73.58	Protein of unknown function, DUF547	[more]
AT3G13000.1	1.4e-17	73.58	Protein of unknown function, DUF547	[more]
AT1G16750.1	5.0e-15	63.46	Protein of unknown function, DUF547	[more]
AT5G47380.1	1.4e-09	50.00	Protein of unknown function, DUF547	[more]
AT5G66600.1	7.0e-09	45.28	Protein of unknown function, DUF547	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006869	Domain of unknown function DUF547	PFAM	PF04784	DUF547	coord: 13..53 e-value: 1.2E-10 score: 41.5
None	No IPR available	PANTHER	PTHR23054	UNCHARACTERIZED	coord: 1..53
None	No IPR available	PANTHER	PTHR23054:SF53	OS06G0704100 PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019081.1	MS019081.1	mRNA