MS019073 (gene) Bitter gourd (TR) v1

Overview


Name	MS019073
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold20: 1189493 .. 1189696 (+)
RNA-Seq Expression	MS019073
Synteny	MS019073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTGAATAATAGTATTTGTCAAGCAATTATTAAGAGGGAGTATTTCTATGTTGATTGGGCCTTTTTAGAAGGTGTGCTTACACAAAAACAGTTTGGGAAGAAATGGCGTAGATGGATCAGTGGCTGTGTAAGAGGAACTAAGTTCTTCATATTTATTAATGGTAGACCTAAGGGTCGTATTTTGGCCTCTAGGGGTCTAAGA

mRNA sequence

AAGTTGAATAATAGTATTTGTCAAGCAATTATTAAGAGGGAGTATTTCTATGTTGATTGGGCCTTTTTAGAAGGTGTGCTTACACAAAAACAGTTTGGGAAGAAATGGCGTAGATGGATCAGTGGCTGTGTAAGAGGAACTAAGTTCTTCATATTTATTAATGGTAGACCTAAGGGTCGTATTTTGGCCTCTAGGGGTCTAAGA

Coding sequence (CDS)

AAGTTGAATAATAGTATTTGTCAAGCAATTATTAAGAGGGAGTATTTCTATGTTGATTGGGCCTTTTTAGAAGGTGTGCTTACACAAAAACAGTTTGGGAAGAAATGGCGTAGATGGATCAGTGGCTGTGTAAGAGGAACTAAGTTCTTCATATTTATTAATGGTAGACCTAAGGGTCGTATTTTGGCCTCTAGGGGTCTAAGA

Protein sequence

KLNNSICQAIIKREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR

Homology

[Close]

BLAST of MS019073 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 18 VDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
          VDW FL+ VL QK FGK+WR WI GCV    F +FINGRP+G+I A+RGLR
Sbjct: 2  VDWCFLDVVLLQKGFGKRWRMWIKGCVSSANFSVFINGRPRGKIFATRGLR 52

[Close]

BLAST of MS019073 vs. NCBI nr
Match: TYK31266.1 (hypothetical protein E5676_scaffold455G005560 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 11  IKREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
           +++ +  VDW FLE  L+ K+F  KW  WI GC++  KF IF+NG+P+GRI ASRG+R
Sbjct: 436 LEKAFDRVDWNFLENTLSLKKFNPKWISWIMGCLKNPKFSIFVNGKPRGRITASRGIR 493

[Close]

BLAST of MS019073 vs. NCBI nr
Match: XP_030497604.1 (uncharacterized protein LOC115713262 [Cannabis sativa])

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 12  KREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
           ++ Y  VDW FL+ VL  K FG  WR+WI+GC+  T F +FINGRP+G+  +SRGLR
Sbjct: 56  EKAYDRVDWNFLDLVLCNKGFGVTWRKWINGCLSSTSFSVFINGRPRGKFSSSRGLR 112

[Close]

BLAST of MS019073 vs. NCBI nr
Match: BBN69746.1 (VIRB2-interacting protein 2 [Prunus dulcis])

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-10
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   KLNNS--ICQAIIKREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPK 60
           +LN S  + +  +++ Y +V+W F++ VL +K FG +WR WI GC+    F + INGRP+
Sbjct: 325 RLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGRPR 384

Query: 61  GRILASRGLR 69
           G+  ASRGLR
Sbjct: 385 GKFRASRGLR 394

[Close]

BLAST of MS019073 vs. NCBI nr
Match: XP_038889274.1 (uncharacterized protein LOC120079176 [Benincasa hispida])

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 11  IKREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
           +++ +  VDW FLE VL  K F +KW  WI GCV+   F +FINGRP+GR+  +RG+R
Sbjct: 306 LEKAFDRVDWEFLEKVLRNKNFSQKWIEWIMGCVKNPMFSVFINGRPRGRVATTRGIR 363

[Close]

BLAST of MS019073 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 18 VDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
          VDW FL+ VL QK FGK+WR WI GCV    F +FINGRP+G+I A+RGLR
Sbjct: 2  VDWCFLDVVLLQKGFGKRWRMWIKGCVSSANFSVFINGRPRGKIFATRGLR 52

[Close]

BLAST of MS019073 vs. ExPASy TrEMBL
Match: A0A803QEA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 12  KREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
           ++ Y  VDW FL+ VL +K FG++WR+WI GCV  T F IFINGR +G+   SRGLR
Sbjct: 933 EKAYDRVDWGFLDMVLRKKGFGERWRKWIRGCVSSTSFSIFINGRVRGKFNGSRGLR 989

[Close]

BLAST of MS019073 vs. ExPASy TrEMBL
Match: M5XUF8 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015473mg PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1   KLNNS--ICQAIIKREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPK 60
           +LN S  + +  +++ Y +V+W F++ VL +K FG +WR WI GC+    F + INGRP+
Sbjct: 823 RLNKSGMVFKIDLEKAYDHVEWRFVDEVLIRKGFGDRWRSWIRGCLETANFSVMINGRPR 882

Query: 61  GRILASRGLR 69
           G+I ASRGLR
Sbjct: 883 GKIRASRGLR 892

[Close]

BLAST of MS019073 vs. ExPASy TrEMBL
Match: A0A5D3E6J9 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005560 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 11  IKREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
           +++ +  VDW FLE  L+ K+F  KW  WI GC++  KF IF+NG+P+GRI ASRG+R
Sbjct: 436 LEKAFDRVDWNFLENTLSLKKFNPKWISWIMGCLKNPKFSIFVNGKPRGRITASRGIR 493

[Close]

BLAST of MS019073 vs. ExPASy TrEMBL
Match: A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 12  KREYFYVDWAFLEGVLTQKQFGKKWRRWISGCVRGTKFFIFINGRPKGRILASRGLR 69
           ++ Y  VDW FL+ VL +K FG++WR+WI GCV  T F IF+NGR +G+   SRGLR
Sbjct: 583 EKAYDRVDWGFLDLVLRKKGFGERWRKWIRGCVSSTSFSIFVNGRVRGKFHGSRGLR 639

The following BLAST results are available for this feature:

BLAST of MS019073 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158566.1	8.1e-12	64.71	uncharacterized protein LOC111025019 [Momordica charantia]	[more]
TYK31266.1	3.4e-10	51.72	hypothetical protein E5676_scaffold455G005560 [Cucumis melo var. makuwa]	[more]
XP_030497604.1	3.4e-10	54.39	uncharacterized protein LOC115713262 [Cannabis sativa]	[more]
BBN69746.1	7.6e-10	44.29	VIRB2-interacting protein 2 [Prunus dulcis]	[more]
XP_038889274.1	7.6e-10	50.00	uncharacterized protein LOC120079176 [Benincasa hispida]	[more]

BLAST of MS019073 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E196	3.9e-12	64.71	uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A803QEA6	1.3e-10	56.14	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
M5XUF8	1.3e-10	45.71	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A5D3E6J9	1.7e-10	51.72	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A803P8A0	2.2e-10	54.39	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MS019073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019073.1	MS019073.1	mRNA