MS019067 (gene) Bitter gourd (TR) v1

Overview


Name	MS019067
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein TIC 214
Location	scaffold20: 1159250 .. 1159345 (+)
RNA-Seq Expression	MS019067
Synteny	MS019067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTAGCTTACATGAATCGTTATTGGTTTGATACCAATAATAGCAGTCGTTTTATTGTGCTAAGAATCCATATGTATAAACAATTAAAAATTTGT

mRNA sequence

GATTTAGCTTACATGAATCGTTATTGGTTTGATACCAATAATAGCAGTCGTTTTATTGTGCTAAGAATCCATATGTATAAACAATTAAAAATTTGT

Coding sequence (CDS)

GATTTAGCTTACATGAATCGTTATTGGTTTGATACCAATAATAGCAGTCGTTTTATTGTGCTAAGAATCCATATGTATAAACAATTAAAAATTTGT

Protein sequence

DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC

Homology

[Close]

BLAST of MS019067 vs. NCBI nr
Match: YP_009430686.1 (photosystem I assembly protein Ycf1 [Gynostemma cardiospermum] >ART65049.1 photosystem I assembly protein Ycf1 [Gynostemma cardiospermum])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QLKIC
Sbjct: 1866 DLACMNRYWFDTNNSSRFSMLRIHMYPQLKIC 1897

[Close]

BLAST of MS019067 vs. NCBI nr
Match: YP_009439863.1 (photosystem I assembly protein Ycf1 [Gynostemma laxiflorum] >YP_010015198.1 photosystem I assembly protein Ycf1 [Gynostemma yixingense] >ATG86629.1 photosystem I assembly protein Ycf1 [Gynostemma laxiflorum] >QOI14323.1 photosystem I assembly protein Ycf1 [Gynostemma yixingense])

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QLKIC
Sbjct: 1866 DLACMNRYWFDTNNSSRFSMLRIHMYPQLKIC 1897

[Close]

BLAST of MS019067 vs. NCBI nr
Match: YP_009440216.1 (photosystem I assembly protein Ycf1 [Gynostemma longipes] >ATG86890.1 photosystem I assembly protein Ycf1 [Gynostemma longipes])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QL+IC
Sbjct: 1863 DLACMNRYWFDTNNSSRFSMLRIHMYPQLQIC 1894

[Close]

BLAST of MS019067 vs. NCBI nr
Match: ANI25242.1 (photosystem I assembly protein Ycf1 [Gynostemma pentaphyllum])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QL+IC
Sbjct: 1863 DLACMNRYWFDTNNSSRFSMLRIHMYPQLQIC 1894

[Close]

BLAST of MS019067 vs. NCBI nr
Match: YP_009468920.1 (photosystem I assembly protein Ycf1 [Gynostemma compressum] >AVA29807.1 photosystem I assembly protein Ycf1 [Gynostemma compressum])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QL+IC
Sbjct: 1863 DLACMNRYWFDTNNSSRFSMLRIHMYPQLQIC 1894

[Close]

BLAST of MS019067 vs. ExPASy Swiss-Prot
Match: Q4VZL0 (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 9.1e-09
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKI 32
            DLA MNRYWFDTNNSSRF +LRIHMY QLKI
Sbjct: 1848 DLACMNRYWFDTNNSSRFSMLRIHMYPQLKI 1878

[Close]

BLAST of MS019067 vs. ExPASy Swiss-Prot
Match: Q3C1P6 (Protein TIC 214 OS=Nicotiana sylvestris OX=4096 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-08
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKI 32
            DLA MNRYWFDTNN SRF +LRIHMY QLKI
Sbjct: 1870 DLACMNRYWFDTNNGSRFSILRIHMYPQLKI 1900

[Close]

BLAST of MS019067 vs. ExPASy Swiss-Prot
Match: P12222 (Protein TIC 214 OS=Nicotiana tabacum OX=4097 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-08
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKI 32
            DLA MNRYWFDTNN SRF +LRIHMY QLKI
Sbjct: 1870 DLACMNRYWFDTNNGSRFSILRIHMYPQLKI 1900

[Close]

BLAST of MS019067 vs. ExPASy Swiss-Prot
Match: Q33BW4 (Protein TIC 214 OS=Nicotiana tomentosiformis OX=4098 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-08
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKI 32
            DLA MNRYWFDTNN SRF +LRIHMY +LKI
Sbjct: 1861 DLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1891

[Close]

BLAST of MS019067 vs. ExPASy Swiss-Prot
Match: Q2MIC9 (Protein TIC 214 OS=Solanum bulbocastanum OX=147425 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-08
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKI 32
            DLA MNRYWFDTNN SRF +LRIHMY +LKI
Sbjct: 1856 DLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1886

[Close]

BLAST of MS019067 vs. ExPASy TrEMBL
Match: A0A286KTW6 (Protein TIC 214 OS=Gynostemma cardiospermum OX=1739658 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QLKIC
Sbjct: 1866 DLACMNRYWFDTNNSSRFSMLRIHMYPQLKIC 1897

[Close]

BLAST of MS019067 vs. ExPASy TrEMBL
Match: A0A291IAB4 (Protein TIC 214 OS=Gynostemma laxiflorum OX=2041848 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-07
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QLKIC
Sbjct: 1866 DLACMNRYWFDTNNSSRFSMLRIHMYPQLKIC 1897

[Close]

BLAST of MS019067 vs. ExPASy TrEMBL
Match: A0A191T4C4 (Protein TIC 214 OS=Gynostemma pentaphyllum OX=182084 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QL+IC
Sbjct: 1863 DLACMNRYWFDTNNSSRFSMLRIHMYPQLQIC 1894

[Close]

BLAST of MS019067 vs. ExPASy TrEMBL
Match: A0A291IB09 (Protein TIC 214 OS=Gynostemma longipes OX=555431 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QL+IC
Sbjct: 1863 DLACMNRYWFDTNNSSRFSMLRIHMYPQLQIC 1894

[Close]

BLAST of MS019067 vs. ExPASy TrEMBL
Match: A0A2L0WQZ5 (Protein TIC 214 OS=Gynostemma compressum OX=1348125 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKIC 33
            DLA MNRYWFDTNNSSRF +LRIHMY QL+IC
Sbjct: 1863 DLACMNRYWFDTNNSSRFSMLRIHMYPQLQIC 1894

[Close]

BLAST of MS019067 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 41.2 bits (95), Expect = 1.8e-04
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 0


Query: 1    DLAYMNRYWFDTNNSSRFIVLRIHMYKQLKI 32
            DLA MNRYWF+T N + F ++RI MY +  I
Sbjct: 1755 DLACMNRYWFNTTNGNHFSMIRIRMYTRFPI 1785

The following BLAST results are available for this feature:

BLAST of MS019067 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009430686.1	6.3e-07	87.50	photosystem I assembly protein Ycf1 [Gynostemma cardiospermum] >ART65049.1 photo...	[more]
YP_009439863.1	6.3e-07	87.50	photosystem I assembly protein Ycf1 [Gynostemma laxiflorum] >YP_010015198.1 phot...	[more]
YP_009440216.1	1.8e-06	84.38	photosystem I assembly protein Ycf1 [Gynostemma longipes] >ATG86890.1 photosyste...	[more]
ANI25242.1	1.8e-06	84.38	photosystem I assembly protein Ycf1 [Gynostemma pentaphyllum]	[more]
YP_009468920.1	1.8e-06	84.38	photosystem I assembly protein Ycf1 [Gynostemma compressum] >AVA29807.1 photosys...	[more]

BLAST of MS019067 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL0	9.1e-09	87.10	Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2	[more]
Q3C1P6	1.6e-08	83.87	Protein TIC 214 OS=Nicotiana sylvestris OX=4096 GN=TIC214 PE=3 SV=1	[more]
P12222	1.6e-08	83.87	Protein TIC 214 OS=Nicotiana tabacum OX=4097 GN=TIC214 PE=3 SV=2	[more]
Q33BW4	4.5e-08	80.65	Protein TIC 214 OS=Nicotiana tomentosiformis OX=4098 GN=TIC214 PE=3 SV=1	[more]
Q2MIC9	4.5e-08	80.65	Protein TIC 214 OS=Solanum bulbocastanum OX=147425 GN=TIC214 PE=3 SV=1	[more]

BLAST of MS019067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A286KTW6	3.1e-07	87.50	Protein TIC 214 OS=Gynostemma cardiospermum OX=1739658 GN=ycf1 PE=3 SV=1	[more]
A0A291IAB4	3.1e-07	87.50	Protein TIC 214 OS=Gynostemma laxiflorum OX=2041848 GN=ycf1 PE=3 SV=1	[more]
A0A191T4C4	8.9e-07	84.38	Protein TIC 214 OS=Gynostemma pentaphyllum OX=182084 GN=ycf1 PE=3 SV=1	[more]
A0A291IB09	8.9e-07	84.38	Protein TIC 214 OS=Gynostemma longipes OX=555431 GN=ycf1 PE=3 SV=1	[more]
A0A2L0WQZ5	8.9e-07	84.38	Protein TIC 214 OS=Gynostemma compressum OX=1348125 GN=ycf1 PE=3 SV=1	[more]

BLAST of MS019067 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	1.8e-04	54.84	Ycf1 protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019067.1	MS019067.1	mRNA