MS019023 (gene) Bitter gourd (TR) v1

Overview


Name	MS019023
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	syntaxin-41-like
Location	scaffold20: 800219 .. 800425 (-)
RNA-Seq Expression	MS019023
Synteny	MS019023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAGGAATCAAACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGTGGGCTCCTACCAGCTCTTCTCCAATTTCGACATCGCCACCGACTAGTTCTGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCAAACTTATGCTCCCTTGAGTACTGAGGATCCGGGTAATTCA

mRNA sequence

ATGGCGTCGAGGAATCAAACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGTGGGCTCCTACCAGCTCTTCTCCAATTTCGACATCGCCACCGACTAGTTCTGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCAAACTTATGCTCCCTTGAGTACTGAGGATCCGGGTAATTCA

Coding sequence (CDS)

ATGGCGTCGAGGAATCAAACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGTGGGCTCCTACCAGCTCTTCTCCAATTTCGACATCGCCACCGACTAGTTCTGGCGGTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTTGTTGCTGAATCCGAATCAAACTTATGCTCCCTTGAGTACTGAGGATCCGGGTAATTCA

Protein sequence

MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAPLSTEDPGNS

Homology

[Close]

BLAST of MS019023 vs. NCBI nr
Match: XP_022156434.1 (syntaxin-41-like [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 6.1e-23
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TLLFRKYRDALRSV APTSSSP+S SP TSSG GGPVIELVSS LL+PN+TYAP
Sbjct: 1  MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELVSSSLLHPNRTYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. NCBI nr
Match: XP_023537590.1 (syntaxin-41-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 5.7e-21
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. NCBI nr
Match: XP_022937577.1 (syntaxin-41-like [Cucurbita moschata] >KAG7021068.1 Syntaxin-43 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 5.7e-21
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. NCBI nr
Match: KAG6586234.1 (Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 5.7e-21
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. NCBI nr
Match: KAG7030133.1 (Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV  PT SSP S SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. ExPASy Swiss-Prot
Match: O65359 (Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.8e-17
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MA+RN+TLLFRKYR++LRSV AP SSS ++    T SGG GPVIE+ S+ LLNPN++YAP
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLT---GTRSGGVGPVIEMASTSLLNPNRSYAP 60

Query: 61 LSTEDPGNS 70
          +STEDPG S
Sbjct: 61 ISTEDPGTS 66

[Close]

BLAST of MS019023 vs. ExPASy Swiss-Prot
Match: Q9SUJ1 (Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPN 60
          MA+RN+TLLFRKYR++LRSV AP  SS  ST     S   +  G GPVIE+ S+ LLNPN
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 61 QTYAPLSTEDPGNS 70
          ++YAP+STEDPGNS
Sbjct: 61 RSYAPVSTEDPGNS 74

[Close]

BLAST of MS019023 vs. ExPASy Swiss-Prot
Match: Q9SWH4 (Syntaxin-42 OS=Arabidopsis thaliana OX=3702 GN=SYP42 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.3e-07
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPN-QTYA 60
          MA+RN+T ++RK+RDA +S  AP S S        S   GGPVIE+VS      N  +YA
Sbjct: 1  MATRNRTTVYRKHRDACKSARAPLSLS-------ASDSFGGPVIEMVSGSFSRSNHSSYA 60

Query: 61 PLSTEDPGNS 70
          PL++ DPG S
Sbjct: 61 PLNSYDPGPS 63

[Close]

BLAST of MS019023 vs. ExPASy TrEMBL
Match: A0A6J1DTG3 (syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TLLFRKYRDALRSV APTSSSP+S SP TSSG GGPVIELVSS LL+PN+TYAP
Sbjct: 1  MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELVSSSLLHPNRTYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. ExPASy TrEMBL
Match: A0A6J1FBL2 (syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.8e-21
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV APTSSSP   SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. ExPASy TrEMBL
Match: A0A6J1KJM9 (syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.1e-21
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV  PT SSP S SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. ExPASy TrEMBL
Match: A0A6J1G576 (syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.1e-21
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TL+FRKYRDALRSV  PT SSP S SP TSSG GGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. ExPASy TrEMBL
Match: A0A0A0LLY7 (t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033310 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.0e-21
Identity = 56/69 (81.16%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MASRN+TLLF+KYRDALRSV  PTSSSP   SP TSS GGGPVIELVSS LL+PN++YAP
Sbjct: 1  MASRNRTLLFKKYRDALRSVRVPTSSSPAFASPSTSSAGGGPVIELVSSSLLHPNRSYAP 60

Query: 61 LSTEDPGNS 70
          LSTEDPGNS
Sbjct: 61 LSTEDPGNS 69

[Close]

BLAST of MS019023 vs. TAIR 10
Match: AT5G26980.1 (syntaxin of plants 41 )

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-18
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MA+RN+TLLFRKYR++LRSV AP SSS ++    T SGG GPVIE+ S+ LLNPN++YAP
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLT---GTRSGGVGPVIEMASTSLLNPNRSYAP 60

Query: 61 LSTEDPGNS 70
          +STEDPG S
Sbjct: 61 ISTEDPGTS 66

[Close]

BLAST of MS019023 vs. TAIR 10
Match: AT5G26980.2 (syntaxin of plants 41 )

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-18
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPNQTYAP 60
          MA+RN+TLLFRKYR++LRSV AP SSS ++    T SGG GPVIE+ S+ LLNPN++YAP
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLT---GTRSGGVGPVIEMASTSLLNPNRSYAP 60

Query: 61 LSTEDPGNS 70
          +STEDPG S
Sbjct: 61 ISTEDPGTS 66

[Close]

BLAST of MS019023 vs. TAIR 10
Match: AT3G05710.1 (syntaxin of plants 43 )

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPN 60
          MA+RN+TLLFRKYR++LRSV AP  SS  ST     S   +  G GPVIE+ S+ LLNPN
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 61 QTYAPLSTEDPGNS 70
          ++YAP+STEDPGNS
Sbjct: 61 RSYAPVSTEDPGNS 74

[Close]

BLAST of MS019023 vs. TAIR 10
Match: AT3G05710.2 (syntaxin of plants 43 )

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPIST-----SPPTSSGGGGPVIELVSSLLLNPN 60
          MA+RN+TLLFRKYR++LRSV AP  SS  ST     S   +  G GPVIE+ S+ LLNPN
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 61 QTYAPLSTEDPGNS 70
          ++YAP+STEDPGNS
Sbjct: 61 RSYAPVSTEDPGNS 74

[Close]

BLAST of MS019023 vs. TAIR 10
Match: AT4G02195.1 (syntaxin of plants 42 )

HSP 1 Score: 53.9 bits (128), Expect = 5.9e-08
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 1  MASRNQTLLFRKYRDALRSVWAPTSSSPISTSPPTSSGGGGPVIELVSSLLLNPN-QTYA 60
          MA+RN+T ++RK+RDA +S  AP S S        S   GGPVIE+VS      N  +YA
Sbjct: 1  MATRNRTTVYRKHRDACKSARAPLSLS-------ASDSFGGPVIEMVSGSFSRSNHSSYA 60

Query: 61 PLSTEDPGNS 70
          PL++ DPG S
Sbjct: 61 PLNSYDPGPS 63

The following BLAST results are available for this feature:

BLAST of MS019023 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156434.1	6.1e-23	86.96	syntaxin-41-like [Momordica charantia]	[more]
XP_023537590.1	5.7e-21	82.61	syntaxin-41-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937577.1	5.7e-21	82.61	syntaxin-41-like [Cucurbita moschata] >KAG7021068.1 Syntaxin-43 [Cucurbita argyr...	[more]
KAG6586234.1	5.7e-21	82.61	Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7030133.1	1.3e-20	81.16	Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS019023 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65359	6.8e-17	66.67	Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1	[more]
Q9SUJ1	2.2e-15	62.16	Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2	[more]
Q9SWH4	8.3e-07	47.14	Syntaxin-42 OS=Arabidopsis thaliana OX=3702 GN=SYP42 PE=1 SV=1	[more]

BLAST of MS019023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTG3	2.9e-23	86.96	syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1	[more]
A0A6J1FBL2	2.8e-21	82.61	syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1	[more]
A0A6J1KJM9	6.1e-21	81.16	syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1	[more]
A0A6J1G576	6.1e-21	81.16	syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1	[more]
A0A0A0LLY7	8.0e-21	81.16	t-SNARE coiled-coil homology domain-containing protein OS=Cucumis sativus OX=365...	[more]

BLAST of MS019023 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26980.1	4.8e-18	66.67	syntaxin of plants 41	[more]
AT5G26980.2	4.8e-18	66.67	syntaxin of plants 41	[more]
AT3G05710.1	1.5e-16	62.16	syntaxin of plants 43	[more]
AT3G05710.2	1.5e-16	62.16	syntaxin of plants 43	[more]
AT4G02195.1	5.9e-08	47.14	syntaxin of plants 42	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019023.1	MS019023.1	mRNA