MS019008 (gene) Bitter gourd (TR) v1

Overview


Name	MS019008
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF3511)
Location	scaffold20: 655170 .. 655484 (-)
RNA-Seq Expression	MS019008
Synteny	MS019008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGGGTTCGAATCGGGTCGGGTCTCTCACGGCGGCGGCCGGAGGATCGAGGTCGTGAGCGGCAAAGGGAACGCCCAGATCTACGCGGCGCGGGCCGGGTCCCCGAGTCTGCCGGCGGGTGCGGACCGGGTCGCCCGGGAGAACCGGGGCGGGTCTGCGGCGGCGAAGCCTTGGGGGTTGGGCGACCCGGAGGCGAAGCGGAGGAAGAGGATTGCCAAGTATAAAGTTTATACGGTTGAAGGGAAGGTGAAAGATTCGCTGCGGAAGGGACTACGGTGGATTAAGAACAAGTGCTCTCGGATTGTCCATGGA

mRNA sequence

ATGTCCGGGTTCGAATCGGGTCGGGTCTCTCACGGCGGCGGCCGGAGGATCGAGGTCGTGAGCGGCAAAGGGAACGCCCAGATCTACGCGGCGCGGGCCGGGTCCCCGAGTCTGCCGGCGGGTGCGGACCGGGTCGCCCGGGAGAACCGGGGCGGGTCTGCGGCGGCGAAGCCTTGGGGGTTGGGCGACCCGGAGGCGAAGCGGAGGAAGAGGATTGCCAAGTATAAAGTTTATACGGTTGAAGGGAAGGTGAAAGATTCGCTGCGGAAGGGACTACGGTGGATTAAGAACAAGTGCTCTCGGATTGTCCATGGA

Coding sequence (CDS)

ATGTCCGGGTTCGAATCGGGTCGGGTCTCTCACGGCGGCGGCCGGAGGATCGAGGTCGTGAGCGGCAAAGGGAACGCCCAGATCTACGCGGCGCGGGCCGGGTCCCCGAGTCTGCCGGCGGGTGCGGACCGGGTCGCCCGGGAGAACCGGGGCGGGTCTGCGGCGGCGAAGCCTTGGGGGTTGGGCGACCCGGAGGCGAAGCGGAGGAAGAGGATTGCCAAGTATAAAGTTTATACGGTTGAAGGGAAGGTGAAAGATTCGCTGCGGAAGGGACTACGGTGGATTAAGAACAAGTGCTCTCGGATTGTCCATGGA

Protein sequence

MSGFESGRVSHGGGRRIEVVSGKGNAQIYAARAGSPSLPAGADRVARENRGGSAAAKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG

Homology

[Close]

BLAST of MS019008 vs. NCBI nr
Match: XP_031288008.1 (uncharacterized protein LOC116146726 [Pistacia vera])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 71/111 (63.96%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK------GNAQIYAARAGSPSLPAGADRVARENRGGSA 60
           M GF SG+ S+GG RR+E+VSGK      G  QIY  R+ SP LP    R  R N   SA
Sbjct: 1   MDGFGSGQRSYGGDRRLEIVSGKSFGTAFGANQIYVTRSHSPDLPPIPPRATRPN--NSA 60

Query: 61  AAKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           + KPWG  DPE KR+KRIAKYKVYTVEGKVK SLRKG RWIKNKCS+IVHG
Sbjct: 61  SVKPWGFSDPEMKRKKRIAKYKVYTVEGKVKASLRKGFRWIKNKCSQIVHG 109

[Close]

BLAST of MS019008 vs. NCBI nr
Match: XP_022998630.1 (uncharacterized protein LOC111493216 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 5.2e-26
Identity = 73/110 (66.36%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK-----GNAQIYAARAGSPSLPAGADRVARENRGGSAA 60
           M+ F+S   +HGGGRR+E+VSGK     G+ QIY    GSP+L   A+RV       SAA
Sbjct: 1   MAHFQS---AHGGGRRVEIVSGKRYGGDGSCQIY----GSPNLATTANRVG----SASAA 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           AKPW  GDPE KRRKRIAKYKVYTVEGKVKDSLRKGL+WIK KCSRIVHG
Sbjct: 61  AKPWRFGDPEGKRRKRIAKYKVYTVEGKVKDSLRKGLQWIKTKCSRIVHG 99

[Close]

BLAST of MS019008 vs. NCBI nr
Match: XP_021904436.1 (uncharacterized protein LOC110819513 [Carica papaya])

HSP 1 Score: 124.0 bits (310), Expect = 7.6e-25
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK----GNAQIYAARAGSPSLPAGADRVARENRGGSAAA 60
           M G+ SG+ S+GG RR+E+VSGK     + QIYA+R  SP  P    R  R ++G  A+ 
Sbjct: 1   MDGYGSGQRSYGGDRRMEIVSGKSFSMSSNQIYASRNNSPERPPVPPRATRSSQG--ASK 60

Query: 61  KPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
            PWG  DPE KR+KRIAKYKVYTVEGKVKDS++KGLRWIKNKCS+IV G
Sbjct: 61  PPWGFSDPEMKRKKRIAKYKVYTVEGKVKDSIKKGLRWIKNKCSQIVRG 107

[Close]

BLAST of MS019008 vs. NCBI nr
Match: XP_023524599.1 (uncharacterized protein LOC111788494 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 1.7e-24
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK-----GNAQIYAARAGSPSLPAGADRVARENRGGSAA 60
           M+ F+S   +HGGGR +E+VSGK     G+ QIY    GSP+L    +RV       +AA
Sbjct: 1   MAHFQS---AHGGGRCVEIVSGKRYGGDGSCQIY----GSPNLATSTNRVG----SAAAA 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           AKPW  GDPE KRRKRIAKYKVYTVEGKVKDSLRKGL+WIK KCSRIVHG
Sbjct: 61  AKPWRFGDPEGKRRKRIAKYKVYTVEGKVKDSLRKGLQWIKTKCSRIVHG 99

[Close]

BLAST of MS019008 vs. NCBI nr
Match: XP_022949041.1 (uncharacterized protein LOC111452504 [Cucurbita moschata] >KAG6606946.1 hypothetical protein SDJN03_00288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK-----GNAQIYAARAGSPSLPAGADRVARENRGGSAA 60
           M+ F+S   +HGGGR +E+VSGK     G+ QIY    GSP+L    +RV       +AA
Sbjct: 1   MAHFQS---AHGGGRSVEIVSGKRYGGDGSCQIY----GSPNLATTTNRVG----PAAAA 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           AKPW  GDPE KRRKRIAKYKVYTVEGKVKDSLRKGL+WIK KCSRIVHG
Sbjct: 61  AKPWRFGDPEGKRRKRIAKYKVYTVEGKVKDSLRKGLQWIKTKCSRIVHG 99

[Close]

BLAST of MS019008 vs. ExPASy TrEMBL
Match: A0A6J1KD11 (uncharacterized protein LOC111493216 OS=Cucurbita maxima OX=3661 GN=LOC111493216 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-26
Identity = 73/110 (66.36%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK-----GNAQIYAARAGSPSLPAGADRVARENRGGSAA 60
           M+ F+S   +HGGGRR+E+VSGK     G+ QIY    GSP+L   A+RV       SAA
Sbjct: 1   MAHFQS---AHGGGRRVEIVSGKRYGGDGSCQIY----GSPNLATTANRVG----SASAA 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           AKPW  GDPE KRRKRIAKYKVYTVEGKVKDSLRKGL+WIK KCSRIVHG
Sbjct: 61  AKPWRFGDPEGKRRKRIAKYKVYTVEGKVKDSLRKGLQWIKTKCSRIVHG 99

[Close]

BLAST of MS019008 vs. ExPASy TrEMBL
Match: A0A2N9HEJ4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38494 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 70/109 (64.22%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MSGFESGRVSHGGG--RRIEVVSGKG--NAQIYAARAGSPSLPAGADRVARENRGGSAAA 60
           M GF SG    GGG  RR+E+VSGKG  + Q+YA R  SP LP     V R +    AA+
Sbjct: 1   MDGFGSGYGCGGGGGDRRLEIVSGKGFSSNQVYATRISSPDLPPIPHGVTRASH---AAS 60

Query: 61  KPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           KPWG  DPE KR+KRIAKYKVYTVEGKVK SLRKGLRWIKNKCS+IV G
Sbjct: 61  KPWGFNDPEVKRKKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQIVRG 106

[Close]

BLAST of MS019008 vs. ExPASy TrEMBL
Match: A0A6J1GAV9 (uncharacterized protein LOC111452504 OS=Cucurbita moschata OX=3662 GN=LOC111452504 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.4e-24
Identity = 70/110 (63.64%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK-----GNAQIYAARAGSPSLPAGADRVARENRGGSAA 60
           M+ F+S   +HGGGR +E+VSGK     G+ QIY    GSP+L    +RV       +AA
Sbjct: 1   MAHFQS---AHGGGRSVEIVSGKRYGGDGSCQIY----GSPNLATTTNRVG----PAAAA 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           AKPW  GDPE KRRKRIAKYKVYTVEGKVKDSLRKGL+WIK KCSRIVHG
Sbjct: 61  AKPWRFGDPEGKRRKRIAKYKVYTVEGKVKDSLRKGLQWIKTKCSRIVHG 99

[Close]

BLAST of MS019008 vs. ExPASy TrEMBL
Match: A0A6J1A329 (uncharacterized protein LOC110414502 OS=Herrania umbratica OX=108875 GN=LOC110414502 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 65/109 (59.63%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK----GNAQIYAARAGSPSLPAGADRVARENRGGSAAA 60
           M  + SG+  +G  RR+E+VSGK    G  QI+++R+ SP L    +R A  ++G   A+
Sbjct: 1   MESYGSGQRPYGVDRRVEIVSGKSSNVGPNQIFSSRSRSPDLQPVPNRTAGPSQG---AS 60

Query: 61  KPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           KPWG  DPE KR+KRIAKYKVYTVEGKVK SLRKGLRWIKNKCS+IVHG
Sbjct: 61  KPWGFTDPEVKRKKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQIVHG 106

[Close]

BLAST of MS019008 vs. ExPASy TrEMBL
Match: A0A5A7TMP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001340 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 69/110 (62.73%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGKGNA-----QIYAARAGSPSLPAGADRVARENRGGSAA 60
           MS F+S        RRIE+VSGK N      QIY     SP+L    +RV     G +AA
Sbjct: 1   MSAFDS-------ARRIEIVSGKHNGARPAPQIYR----SPNLDTNGNRV-----GSAAA 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
            KPWG  DPEAKRRKRIAKYKVYTVEG+VKDSLRKGLRWIKN+CSRIVHG
Sbjct: 61  GKPWGFADPEAKRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNRCSRIVHG 94

[Close]

BLAST of MS019008 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-21
Identity = 55/102 (53.92%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 3   GFESGRVSHGGGRRIEVVSGKGNAQIYAARAGSPSLPAGADRVARENRGGSAAAKPWGLG 62
           G+ SG+ ++G  RR E+VSGK N QIY  R   PSLP    +VA      S++ +  GL 
Sbjct: 8   GYGSGQRTYGVDRRKEIVSGKRN-QIYGTRDYPPSLPPPPGKVAAGRSNASSSLRIGGLS 67

Query: 63  DPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVH 105
           D E KR+KRIA+YK YTVEGKVK +L+ G RWIKNKC +IVH
Sbjct: 68  DAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVH 108

[Close]

BLAST of MS019008 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 72.0 bits (175), Expect = 3.2e-13
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK-----GNAQIYAARAGSPSLPAGADRVARENRGGSAA 60
           M GF S   +    + +++V+GK     G  Q+Y+ R  SP                   
Sbjct: 1   MDGFGSHPRTLAVDQWMDIVNGKGYGVGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTT 60

Query: 61  AKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           A PW L D E KR+KRIA YK Y +EGKVK +++KG  WIK++ S I+HG
Sbjct: 61  ATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of MS019008 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 64.7 bits (156), Expect = 5.1e-11
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 47  RENRGGSAAAKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
           R +   S   K W   DPE KR++R+AKYK+Y+ EGK+K +LRK  +WIK +CS+I+HG
Sbjct: 66  RRSSSHSTLFKGW-WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of MS019008 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-11
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 21  SGKGNAQIYAARAGSPSLPAGADRVARENRGGSAAAKPWGLGDPEAKRRKRIAKYKVYTV 80
           SG G   + +        P          +G S+++  WG  DP+ +R+KR+  Y+ YTV
Sbjct: 33  SGNGMQDLRSYSTSYTDYPTRIPEDQNPKKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTV 92

Query: 81  EGKVKDSLRKGLRWIKNKCSRIVH 105
           EGK+K S RK  +WIK+KC+++++
Sbjct: 93  EGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of MS019008 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 62.0 bits (149), Expect = 3.3e-10
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 1   MSGFESGRVSHGGGRRIEVVSGK--GNAQIYAARAGSPSLPAGADRVAREN-------RG 60
           M  F   R    GG +I+   G   G+ + Y+A  G+           REN         
Sbjct: 1   MEDFGRQRPYGDGGMQIQPYHGNQGGDFRSYSASYGT-----------RENNIYDVKKEK 60

Query: 61  GSAAAKPWGLGDPEAKRRKRIAKYKVYTVEGKVKDSLRKGLRWIKNKCSRIVHG 106
             A +K WG+ DPE +R+KR+A YK+Y VEGKVK S R   RW+K + +++V+G
Sbjct: 61  SIARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYG 103

The following BLAST results are available for this feature:

BLAST of MS019008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031288008.1	1.4e-26	63.96	uncharacterized protein LOC116146726 [Pistacia vera]	[more]
XP_022998630.1	5.2e-26	66.36	uncharacterized protein LOC111493216 [Cucurbita maxima]	[more]
XP_021904436.1	7.6e-25	60.55	uncharacterized protein LOC110819513 [Carica papaya]	[more]
XP_023524599.1	1.7e-24	63.64	uncharacterized protein LOC111788494 [Cucurbita pepo subsp. pepo]	[more]
XP_022949041.1	2.9e-24	63.64	uncharacterized protein LOC111452504 [Cucurbita moschata] >KAG6606946.1 hypothet...	[more]

BLAST of MS019008 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KD11	2.5e-26	66.36	uncharacterized protein LOC111493216 OS=Cucurbita maxima OX=3661 GN=LOC111493216...	[more]
A0A2N9HEJ4	1.1e-24	64.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38494 PE=4 SV=1	[more]
A0A6J1GAV9	1.4e-24	63.64	uncharacterized protein LOC111452504 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]
A0A6J1A329	1.5e-23	59.63	uncharacterized protein LOC110414502 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A5A7TMP6	2.0e-23	62.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS019008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47480.1	1.9e-21	53.92	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	3.2e-13	38.18	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	5.1e-11	50.85	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	6.6e-11	34.52	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	3.3e-10	35.96	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 62..105 e-value: 5.9E-27 score: 93.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..63
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 6..105
None	No IPR available	PANTHER	PTHR33193:SF13	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 6..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS019008.1	MS019008.1	mRNA