MS018997 (gene) Bitter gourd (TR) v1

Overview


Name	MS018997
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	rRNA adenine N(6)-methyltransferase
Location	scaffold20: 544868 .. 545164 (-)
RNA-Seq Expression	MS018997
Synteny	MS018997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTACCCTTTCAGATACAATGGATGCTGAAGCTCAAGACGATATTTCTCCGAGGCCTCGGGTTAAAGCCTCATTTTACCTAGGGTCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACTCTCTCAGAGCAGTTGGTTTCTATGAAAGAGGAGAGCATGGCTATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAACGATGTGCCGGACGAACTAGCTGAAGAAGTTTCCGAGGACGACGACGAGATCCCCGAAAAGCCTCAAGTGAAGTCAAAGAAGTCTAAATTAACA

mRNA sequence

TTTACCCTTTCAGATACAATGGATGCTGAAGCTCAAGACGATATTTCTCCGAGGCCTCGGGTTAAAGCCTCATTTTACCTAGGGTCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACTCTCTCAGAGCAGTTGGTTTCTATGAAAGAGGAGAGCATGGCTATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAACGATGTGCCGGACGAACTAGCTGAAGAAGTTTCCGAGGACGACGACGAGATCCCCGAAAAGCCTCAAGTGAAGTCAAAGAAGTCTAAATTAACA

Coding sequence (CDS)

TTTACCCTTTCAGATACAATGGATGCTGAAGCTCAAGACGATATTTCTCCGAGGCCTCGGGTTAAAGCCTCATTTTACCTAGGGTCAGAGACACATTTGGTCAATACAGCTAATAAAGGCACTCTCTCAGAGCAGTTGGTTTCTATGAAAGAGGAGAGCATGGCTATTTTGAAGGAGTACATAACCAAACATAATGTTCCTAACGATGTGCCGGACGAACTAGCTGAAGAAGTTTCCGAGGACGACGACGAGATCCCCGAAAAGCCTCAAGTGAAGTCAAAGAAGTCTAAATTAACA

Protein sequence

FTLSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT

Homology

[Close]

BLAST of MS018997 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 3   LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYIT 62
           L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYIT
Sbjct: 3   LPDSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYIT 62

Query: 63  KHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           KHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 63  KHNVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of MS018997 vs. NCBI nr
Match: KAA0035148.1 (uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 3   LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYIT 62
           L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYIT
Sbjct: 15  LPDSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYIT 74

Query: 63  KHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           KHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 75  KHNVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of MS018997 vs. NCBI nr
Match: TYK29223.1 (uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 7   MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNV 66
           MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 67  PNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           PNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of MS018997 vs. NCBI nr
Match: KAG7036645.1 (hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-32
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 5   DTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKH 64
           D+MDA+AQ+ IS  PRVKASF LGSE HLVNTANKGTLSEQL+SMKEESMAILKEYITKH
Sbjct: 102 DSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKH 161

Query: 65  NVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT 100
           NVPNDVPDEL EE SE DDDE  EKPQVKSKK+KLT
Sbjct: 162 NVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 197

[Close]

BLAST of MS018997 vs. NCBI nr
Match: KAG6606942.1 (putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 3.5e-32
Identity = 81/96 (84.38%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 5   DTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKH 64
           D+MDA+AQ+ IS  PRVKASF LGSE HLVNTANKGTLSEQL+SMKEESMAILKEYITKH
Sbjct: 249 DSMDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKH 308

Query: 65  NVPNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT 100
           NVPNDVPDEL EE SE DDDE  EKPQVKSKK+KLT
Sbjct: 309 NVPNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 344

[Close]

BLAST of MS018997 vs. ExPASy TrEMBL
Match: A0A5A7SX16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002390 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.1e-34
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 3   LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYIT 62
           L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYIT
Sbjct: 15  LPDSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYIT 74

Query: 63  KHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           KHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 75  KHNVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of MS018997 vs. ExPASy TrEMBL
Match: A0A1S3B8U1 (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 9.1e-34
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 3   LSDTMDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYIT 62
           L D+MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYIT
Sbjct: 3   LPDSMDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYIT 62

Query: 63  KHNVPNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           KHNVPNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 63  KHNVPNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of MS018997 vs. ExPASy TrEMBL
Match: A0A5D3DZN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00090 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 7   MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNV 66
           MDA A++DI  RPRVK SF LGSE HLVNTANKGTLSEQL+SMKE+SMAILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 67  PNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           PNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of MS018997 vs. ExPASy TrEMBL
Match: A0A0A0M0V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.2e-32
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 7   MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNV 66
           MDA A++DI  RPRVK S  LGSETHLVNTANKGTLSEQL SMKE+SMAILKEYITKHNV
Sbjct: 1   MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 67  PNDVPDELAEEVSEDDDEIPEKPQVKSKKSKLT 100
           PNDVPDEL EE SEDDDEI EKPQVK+KK+K+T
Sbjct: 61  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of MS018997 vs. ExPASy TrEMBL
Match: A0A6J1G9M3 (uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC111452065 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.5e-32
Identity = 80/94 (85.11%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 7   MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNV 66
           MDA+AQ+ IS  PRVKASF LGSE HLVNTANKGTLSEQL+SMKEESMAILKEYITKHNV
Sbjct: 1   MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 67  PNDVPDELAEEVSE-DDDEIPEKPQVKSKKSKLT 100
           PNDVPDEL EE SE DDDE  EKPQVKSKK+KLT
Sbjct: 61  PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of MS018997 vs. TAIR 10
Match: AT1G47820.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 7  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNV 66
          M+ E+   +  +  VK  F LG+E++ +++    T+ +QLVSMKEESM ILK++ITKHNV
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 67 P-NDVPDELAEEVSEDDDE------IPEKPQVKSK 95
          P +DVPD++  +  E DD+       P KP  K+K
Sbjct: 61 PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTK 95

[Close]

BLAST of MS018997 vs. TAIR 10
Match: AT1G47820.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 7  MDAEAQDDISPRPRVKASFYLGSETHLVNTANKGTLSEQLVSMKEESMAILKEYITKHNV 66
          M+ E+   +  +  VK  F LG+E++ +++    T+ +QLVSMKEESM ILK++ITKHNV
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 67 P-NDVPDELAEEVSEDDDE------IPEKPQVKSK 95
          P +DVPD++  +  E DD+       P KP  K+K
Sbjct: 61 PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTK 95

The following BLAST results are available for this feature:

BLAST of MS018997 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443784.1	1.9e-33	81.44	PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo]	[more]
KAA0035148.1	1.9e-33	81.44	uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa]	[more]
TYK29223.1	2.1e-32	82.80	uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa]	[more]
KAG7036645.1	3.5e-32	84.38	hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6606942.1	3.5e-32	84.38	putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS018997 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SX16	9.1e-34	81.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B8U1	9.1e-34	81.44	uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=...	[more]
A0A5D3DZN8	1.0e-32	82.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0M0V3	2.2e-32	82.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1	[more]
A0A6J1G9M3	8.5e-32	85.11	uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]

BLAST of MS018997 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47820.1	1.5e-12	43.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G47820.2	1.5e-12	43.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..99
None	No IPR available	PANTHER	PTHR37194	T2E6.7-RELATED	coord: 7..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018997.1	MS018997.1	mRNA