MS018994 (gene) Bitter gourd (TR) v1

Overview


Name	MS018994
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Vacuolar protein sorting-associated protein 51 homolog
Location	scaffold20: 529891 .. 530100 (+)
RNA-Seq Expression	MS018994
Synteny	MS018994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTGATGATGTTCCAATGGATGAAAAAGCTAAGAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGATGCTTCAATGTCTGGCTCACCCACGGGTTCATCTAATAGATATGCCTCTCCATTAGATGCCATCAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTCTGGTACATCAAGCCCCATCTCATTTTTAT

mRNA sequence

ATGGAGATTGATGATGTTCCAATGGATGAAAAAGCTAAGAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGATGCTTCAATGTCTGGCTCACCCACGGGTTCATCTAATAGATATGCCTCTCCATTAGATGCCATCAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTCTGGTACATCAAGCCCCATCTCATTTTTAT

Coding sequence (CDS)

ATGGAGATTGATGATGTTCCAATGGATGAAAAAGCTAAGAGGATGAGGGATCTGCTATCTAGCTTCTACTCCCCTGATGCTTCAATGTCTGGCTCACCCACGGGTTCATCTAATAGATATGCCTCTCCATTAGATGCCATCAACACTACCTCATTTAATCCTGATCAGTATATGAGCATTCTGGTACATCAAGCCCCATCTCATTTTTAT

Protein sequence

MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSILVHQAPSHFY

Homology

[Close]

BLAST of MS018994 vs. NCBI nr
Match: XP_022155269.1 (vacuolar protein sorting-associated protein 51 homolog [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 5.0e-25
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60

Query: 61 LVHQA 66
          LV ++
Sbjct: 61 LVQKS 65

[Close]

BLAST of MS018994 vs. NCBI nr
Match: XP_004139639.1 (vacuolar protein sorting-associated protein 51 homolog [Cucumis sativus] >XP_011659140.1 vacuolar protein sorting-associated protein 51 homolog [Cucumis sativus] >KGN44805.2 hypothetical protein Csa_015985 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 9.5e-24
Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPL+AINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LVHQA 66
          LV ++
Sbjct: 61 LVQKS 65

[Close]

BLAST of MS018994 vs. NCBI nr
Match: XP_008461504.1 (PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Cucumis melo] >XP_008461505.1 PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMS SPTGSSNRYASPL+AINTTSFNPDQYM+I
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSSSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LVHQA 66
          LV ++
Sbjct: 61 LVQKS 65

[Close]

BLAST of MS018994 vs. NCBI nr
Match: KAG6606940.1 (Vacuolar protein sorting-associated protein 51-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPL+ INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LVHQA 66
          LV +A
Sbjct: 61 LVQKA 65

[Close]

BLAST of MS018994 vs. NCBI nr
Match: XP_022949182.1 (vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_022949183.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_022949185.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_022949186.1 vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPL+ INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LVHQA 66
          LV +A
Sbjct: 61 LVQKA 65

[Close]

BLAST of MS018994 vs. ExPASy Swiss-Prot
Match: Q0WQ75 (Vacuolar protein sorting-associated protein 51 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS51 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-09
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+S S  GSS    +  D IN+TSF+ DQYM +
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTS--GSS--INASFDNINSTSFDADQYMDL 60

Query: 61 LVHQA 66
          ++ ++
Sbjct: 61 MIKKS 61

[Close]

BLAST of MS018994 vs. ExPASy TrEMBL
Match: A0A6J1DPR9 (Vacuolar protein sorting-associated protein 51 homolog OS=Momordica charantia OX=3673 GN=LOC111022412 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-25
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60

Query: 61 LVHQA 66
          LV ++
Sbjct: 61 LVQKS 65

[Close]

BLAST of MS018994 vs. ExPASy TrEMBL
Match: A0A0A0K869 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G324110 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.6e-24
Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPL+AINTTSFNPDQYM+I
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LVHQA 66
          LV ++
Sbjct: 61 LVQKS 65

[Close]

BLAST of MS018994 vs. ExPASy TrEMBL
Match: A0A1S3CES5 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis melo OX=3656 GN=LOC103500085 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.9e-24
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEIDDVPMDEKAKRMRDLLSSFYSPDASMS SPTGSSNRYASPL+AINTTSFNPDQYM+I
Sbjct: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSSSPTGSSNRYASPLEAINTTSFNPDQYMNI 60

Query: 61 LVHQA 66
          LV ++
Sbjct: 61 LVQKS 65

[Close]

BLAST of MS018994 vs. ExPASy TrEMBL
Match: A0A6J1K9H7 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita maxima OX=3661 GN=LOC111492889 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPL+ INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LVHQA 66
          LV +A
Sbjct: 61 LVQKA 65

[Close]

BLAST of MS018994 vs. ExPASy TrEMBL
Match: A0A6J1GBC0 (Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita moschata OX=3662 GN=LOC111452610 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          MEI+DVPMDEKAKRMRDLLSSFYSPDASMSGS TGSSNRYASPL+ INTTSFNPDQYMSI
Sbjct: 1  MEIEDVPMDEKAKRMRDLLSSFYSPDASMSGSSTGSSNRYASPLETINTTSFNPDQYMSI 60

Query: 61 LVHQA 66
          LV +A
Sbjct: 61 LVQKA 65

[Close]

BLAST of MS018994 vs. TAIR 10
Match: AT4G02030.1 (Vps51/Vps67 family (components of vesicular transport) protein )

HSP 1 Score: 63.5 bits (153), Expect = 7.5e-11
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+S S  GSS    +  D IN+TSF+ DQYM +
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTS--GSS--INASFDNINSTSFDADQYMDL 60

Query: 61 LVHQA 66
          ++ ++
Sbjct: 61 MIKKS 61

[Close]

BLAST of MS018994 vs. TAIR 10
Match: AT4G02030.2 (Vps51/Vps67 family (components of vesicular transport) protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MEIDDVPMDEKAKRMRDLLSSFYSPDASMSGSPTGSSNRYASPLDAINTTSFNPDQYMSI 60
          M  +  PMDEKAKRMRDLLSSFY+PD S+S S  GSS    +  D IN+TSF+ DQYM +
Sbjct: 1  MATEAAPMDEKAKRMRDLLSSFYAPDPSISTS--GSS--INASFDNINSTSFDADQYMDL 58

Query: 61 LV 63
          ++
Sbjct: 61 MI 58

The following BLAST results are available for this feature:

BLAST of MS018994 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155269.1	5.0e-25	95.38	vacuolar protein sorting-associated protein 51 homolog [Momordica charantia]	[more]
XP_004139639.1	9.5e-24	90.77	vacuolar protein sorting-associated protein 51 homolog [Cucumis sativus] >XP_011...	[more]
XP_008461504.1	1.6e-23	90.77	PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Cucumis melo]...	[more]
KAG6606940.1	4.7e-23	90.77	Vacuolar protein sorting-associated protein 51-like protein, partial [Cucurbita ...	[more]
XP_022949182.1	4.7e-23	90.77	vacuolar protein sorting-associated protein 51 homolog [Cucurbita moschata] >XP_...	[more]

BLAST of MS018994 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WQ75	1.1e-09	55.38	Vacuolar protein sorting-associated protein 51 homolog OS=Arabidopsis thaliana O...	[more]

BLAST of MS018994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPR9	2.4e-25	95.38	Vacuolar protein sorting-associated protein 51 homolog OS=Momordica charantia OX...	[more]
A0A0A0K869	4.6e-24	90.77	Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis sativus OX=365...	[more]
A0A1S3CES5	7.9e-24	90.77	Vacuolar protein sorting-associated protein 51 homolog OS=Cucumis melo OX=3656 G...	[more]
A0A6J1K9H7	2.3e-23	90.77	Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita maxima OX=36...	[more]
A0A6J1GBC0	2.3e-23	90.77	Vacuolar protein sorting-associated protein 51 homolog OS=Cucurbita moschata OX=...	[more]

BLAST of MS018994 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02030.1	7.5e-11	55.38	Vps51/Vps67 family (components of vesicular transport) protein	[more]
AT4G02030.2	1.3e-10	58.06	Vps51/Vps67 family (components of vesicular transport) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15954:SF5	LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG	coord: 1..64
IPR014812	Vacuolar protein sorting-associated protein 51	PANTHER	PTHR15954	UNCHARACTERIZED	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018994.1	MS018994.1	mRNA