MS018993 (gene) Bitter gourd (TR) v1

Overview
NameMS018993
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold20: 524057 .. 524356 (-)
RNA-Seq ExpressionMS018993
SyntenyMS018993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATAGGGAATTTAATTGGGAAATATGAAAAAATTGATTGTGATGAAGACGGTCTTTGTTGGGGCCAGACAATGAAAATTAAGGTGGCCATTGATGTGTTAAAACCGCTTCGTAGGGGTGTTCTTCTTAAGCTCGGATCAATGGCGGATGAGAGATGGATCCCCATCACGTATGAAAAACTTCCGAATTTCTGTTACGGATGCGGTAAGCTGGACCATGTGTTAAAGGAGTGCGATGAGCATGTACCAGGCGATGCTGATCAGCTCCAATATGGAGCGTGGCTGAGGGAGTTGCCATTT

mRNA sequence

TCAATAGGGAATTTAATTGGGAAATATGAAAAAATTGATTGTGATGAAGACGGTCTTTGTTGGGGCCAGACAATGAAAATTAAGGTGGCCATTGATGTGTTAAAACCGCTTCGTAGGGGTGTTCTTCTTAAGCTCGGATCAATGGCGGATGAGAGATGGATCCCCATCACGTATGAAAAACTTCCGAATTTCTGTTACGGATGCGGTAAGCTGGACCATGTGTTAAAGGAGTGCGATGAGCATGTACCAGGCGATGCTGATCAGCTCCAATATGGAGCGTGGCTGAGGGAGTTGCCATTT

Coding sequence (CDS)

TCAATAGGGAATTTAATTGGGAAATATGAAAAAATTGATTGTGATGAAGACGGTCTTTGTTGGGGCCAGACAATGAAAATTAAGGTGGCCATTGATGTGTTAAAACCGCTTCGTAGGGGTGTTCTTCTTAAGCTCGGATCAATGGCGGATGAGAGATGGATCCCCATCACGTATGAAAAACTTCCGAATTTCTGTTACGGATGCGGTAAGCTGGACCATGTGTTAAAGGAGTGCGATGAGCATGTACCAGGCGATGCTGATCAGCTCCAATATGGAGCGTGGCTGAGGGAGTTGCCATTT

Protein sequence

SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKLPNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELPF
Homology
BLAST of MS018993 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 110.9 bits (276), Expect = 6.3e-21
Identity = 49/99 (49.49%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 2   IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKL 61
           +GN +G++  +D ++ G+ WG+TM+I+VAIDV KPLRRG+ L L S AD  W+   YE+L
Sbjct: 146 VGNAVGQFIDMDYEDGGIAWGRTMRIRVAIDVRKPLRRGMKLALSS-ADPIWVDFKYERL 205

Query: 62  PNFCYGCGKLDHVLKECDEHVP----GDADQLQYGAWLR 97
           P +CY CG+L H  +ECD+ +        D LQYGAWLR
Sbjct: 206 PIYCYFCGRLGHSDRECDDKLSFADGTRVDSLQYGAWLR 243

BLAST of MS018993 vs. NCBI nr
Match: OQU92454.1 (hypothetical protein SORBI_3001G347001 [Sorghum bicolor])

HSP 1 Score: 110.5 bits (275), Expect = 8.2e-21
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 2   IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKL 61
           +GN IG+   +D ++DG   G  ++IKV ID+ KPL RG+LL+     D+ W PI YE L
Sbjct: 10  LGNRIGRALAVDTEDDGSAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYL 69

Query: 62  PNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELP 100
           PNFCYGCG L HV KECD  V  +    Q+G WLR  P
Sbjct: 70  PNFCYGCGLLGHVEKECDSCVEEEVGFKQFGDWLRVTP 107

BLAST of MS018993 vs. NCBI nr
Match: XP_028122006.1 (uncharacterized protein LOC114319195 [Camellia sinensis])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 0

Query: 2   IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKL 61
           +GN +G++  +D ++ G+ WG+TM+I+VA+DV KPLRRG+ L L S A+  W+   YE+L
Sbjct: 146 VGNAVGQFIDMDYEDGGIVWGRTMRIRVALDVRKPLRRGMKLALSS-AEPIWVDFKYERL 205

Query: 62  PNFCYGCGKLDHVLKECDEHVP----GDADQLQYGAWLR 97
           P +CY CG+L H  +ECD+ +        D LQYGAWLR
Sbjct: 206 PIYCYFCGRLGHSERECDDKLSSADGSRVDSLQYGAWLR 243

BLAST of MS018993 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-20
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 2   IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKL 61
           +GN IG +E ++ + +  CWG  ++++V  DV+KPL RG+ L L       WIPI YE+L
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 62  PNFCYGCGKLDHVLKEC-DEHVPGDADQLQYGAWLR 97
           P+F Y CG+LDH+LK+C D  V   +  LQYG WLR
Sbjct: 209 PDFRYHCGRLDHILKDCSDCCVDSVSKNLQYGPWLR 244

BLAST of MS018993 vs. NCBI nr
Match: KAF5458622.1 (hypothetical protein F2P56_022639, partial [Juglans regia])

HSP 1 Score: 107.1 bits (266), Expect = 9.1e-20
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 1   SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEK 60
           ++G  +G+   +D D+ G+CWG  ++++V ID+ KPL RG +L LG+   + WIP  YE+
Sbjct: 145 NLGKSMGEVLMVDTDDSGVCWGSFLRLRVMIDLTKPLARGRVLTLGNA--KYWIPFKYER 204

Query: 61  LPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLRELP 100
           LPNFCY CGK+ HV   CD+   G A       QYGAWLR  P
Sbjct: 205 LPNFCYHCGKIKHVTGMCDQLDKGKASLEGFNQQYGAWLRTSP 245

BLAST of MS018993 vs. ExPASy TrEMBL
Match: A0A1Z5S941 (CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347001 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.0e-21
Identity = 49/98 (50.00%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 2   IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKL 61
           +GN IG+   +D ++DG   G  ++IKV ID+ KPL RG+LL+     D+ W PI YE L
Sbjct: 10  LGNRIGRALAVDTEDDGSAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYL 69

Query: 62  PNFCYGCGKLDHVLKECDEHVPGDADQLQYGAWLRELP 100
           PNFCYGCG L HV KECD  V  +    Q+G WLR  P
Sbjct: 70  PNFCYGCGLLGHVEKECDSCVEEEVGFKQFGDWLRVTP 107

BLAST of MS018993 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0

Query: 2   IGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEKL 61
           +GN IG +E ++ + +  CWG  ++++V  DV+KPL RG+ L L       WIPI YE+L
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 62  PNFCYGCGKLDHVLKEC-DEHVPGDADQLQYGAWLR 97
           P+F Y CG+LDH+LK+C D  V   +  LQYG WLR
Sbjct: 209 PDFRYHCGRLDHILKDCSDCCVDSVSKNLQYGPWLR 244

BLAST of MS018993 vs. ExPASy TrEMBL
Match: A0A2I4E2H1 (uncharacterized protein LOC108985667 OS=Juglans regia OX=51240 GN=LOC108985667 PE=4 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 9.8e-20
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 1   SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEK 60
           ++G  +G+   +D D+ G+CWG  ++++V ID+ KPL RG  L LG+   + WIP  YE+
Sbjct: 103 NLGKSMGEVLMVDTDDSGVCWGSFLRLRVMIDLTKPLARGRFLTLGNA--KYWIPFKYER 162

Query: 61  LPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLRELP 100
           LPNFCY CGK+ HV   CD+   G A       QYGAWLR  P
Sbjct: 163 LPNFCYHCGKIKHVTGMCDKLDRGKASLEGFNQQYGAWLRTSP 203

BLAST of MS018993 vs. ExPASy TrEMBL
Match: A0A6P9E3M1 (uncharacterized protein LOC118344802 OS=Juglans regia OX=51240 GN=LOC118344802 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.8e-20
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 0

Query: 1   SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEK 60
           ++G  +G+   +D D+ G+CWG  ++++V ID+ KPL RG  L LG+   + WIP  YE+
Sbjct: 199 NLGKSMGEVLMVDTDDSGVCWGSFLRLRVMIDLTKPLARGRFLTLGNA--KYWIPFKYER 258

Query: 61  LPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLRELP 100
           LPNFCY CGK+ HV   CD+   G A       QYGAWLR  P
Sbjct: 259 LPNFCYHCGKIKHVTGMCDKLDRGKASLEGFNQQYGAWLRTSP 299

BLAST of MS018993 vs. ExPASy TrEMBL
Match: A0A6P9EBQ9 (uncharacterized protein LOC118344200 OS=Juglans regia OX=51240 GN=LOC118344200 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 0

Query: 1   SIGNLIGKYEKIDCDEDGLCWGQTMKIKVAIDVLKPLRRGVLLKLGSMADERWIPITYEK 60
           ++G  +G+   +D D  G+CWG  +++ V ID+ KPL RG  L LG+   + WIP  YE+
Sbjct: 86  NLGKSMGEVLMVDTDSSGVCWGSFLRLMVMIDLTKPLARGRFLTLGN--SKHWIPFKYER 145

Query: 61  LPNFCYGCGKLDHVLKECDEHVPGDAD----QLQYGAWLRELP 100
           LPNFCY CGK+ HV   CD+   G A       QYGAWLR  P
Sbjct: 146 LPNFCYHCGKIKHVTGMCDKLDRGKASLEGFNQQYGAWLRTSP 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_028124075.16.3e-2149.49uncharacterized protein LOC114321128 [Camellia sinensis][more]
OQU92454.18.2e-2150.00hypothetical protein SORBI_3001G347001 [Sorghum bicolor][more]
XP_028122006.11.8e-2047.47uncharacterized protein LOC114319195 [Camellia sinensis][more]
XP_022132681.13.1e-2046.88uncharacterized protein LOC111005481 [Momordica charantia][more]
KAF5458622.19.1e-2045.63hypothetical protein F2P56_022639, partial [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1Z5S9414.0e-2150.00CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347... [more]
A0A6J1BSZ11.5e-2046.88uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A2I4E2H19.8e-2045.63uncharacterized protein LOC108985667 OS=Juglans regia OX=51240 GN=LOC108985667 P... [more]
A0A6P9E3M19.8e-2045.63uncharacterized protein LOC118344802 OS=Juglans regia OX=51240 GN=LOC118344802 P... [more]
A0A6P9EBQ91.7e-1945.63uncharacterized protein LOC118344200 OS=Juglans regia OX=51240 GN=LOC118344200 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 31..79
e-value: 4.2E-12
score: 45.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 65..80
score: 8.713199

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018993.1MS018993.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding