MS018989 (gene) Bitter gourd (TR) v1

Overview


Name	MS018989
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CP12 domain-containing protein
Location	scaffold20: 507332 .. 507715 (+)
RNA-Seq Expression	MS018989
Synteny	MS018989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCATTTCTGGGGTGAACCTCTCAAGTCCAAGGATCTTGGCCAAGGCAGCTGAGACACCTAAAGTGCAGGCCCTCAATGGCGGGTGGCTCCACCGCCCGTGGAGGCAGTCGGGCCGATTCACGGCCATTCGGTTGAGAGTTCCTCCGGTTCACGCCGCACCAGATAAGATATCCGATAAGGTAGAAGAGAGCATCAAGAATGCAGAGGAGGCATGCGCAGGCGACCCCGTGAGCGGGGAGTGTGCGGCGGCGTGGGATGAAGTTGAGGAACTGAGCGCAGCGGCGAGCCATGCCCGGGACAAGAAGAAGGAGTCGGACCCATTGGAGAACTATTGCAAGGACAACCCAGAGACTGAGGAATGCCGCACCTATGACAAT

mRNA sequence

ATGGCAACCATTTCTGGGGTGAACCTCTCAAGTCCAAGGATCTTGGCCAAGGCAGCTGAGACACCTAAAGTGCAGGCCCTCAATGGCGGGTGGCTCCACCGCCCGTGGAGGCAGTCGGGCCGATTCACGGCCATTCGGTTGAGAGTTCCTCCGGTTCACGCCGCACCAGATAAGATATCCGATAAGGTAGAAGAGAGCATCAAGAATGCAGAGGAGGCATGCGCAGGCGACCCCGTGAGCGGGGAGTGTGCGGCGGCGTGGGATGAAGTTGAGGAACTGAGCGCAGCGGCGAGCCATGCCCGGGACAAGAAGAAGGAGTCGGACCCATTGGAGAACTATTGCAAGGACAACCCAGAGACTGAGGAATGCCGCACCTATGACAAT

Coding sequence (CDS)

ATGGCAACCATTTCTGGGGTGAACCTCTCAAGTCCAAGGATCTTGGCCAAGGCAGCTGAGACACCTAAAGTGCAGGCCCTCAATGGCGGGTGGCTCCACCGCCCGTGGAGGCAGTCGGGCCGATTCACGGCCATTCGGTTGAGAGTTCCTCCGGTTCACGCCGCACCAGATAAGATATCCGATAAGGTAGAAGAGAGCATCAAGAATGCAGAGGAGGCATGCGCAGGCGACCCCGTGAGCGGGGAGTGTGCGGCGGCGTGGGATGAAGTTGAGGAACTGAGCGCAGCGGCGAGCCATGCCCGGGACAAGAAGAAGGAGTCGGACCCATTGGAGAACTATTGCAAGGACAACCCAGAGACTGAGGAATGCCGCACCTATGACAAT

Protein sequence

MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPETEECRTYDN

Homology

[Close]

BLAST of MS018989 vs. NCBI nr
Match: XP_022155326.1 (calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 258.1 bits (658), Expect = 4.1e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. NCBI nr
Match: XP_008454293.1 (PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa] >TYK29541.1 calvin cycle protein CP12-2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.1e-57
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVN+SSPRILAKAA+TPKVQ LN GWL   W+QS R  AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNISSPRILAKAAQTPKVQPLNVGWLRCSWKQSARVGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLENYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. NCBI nr
Match: XP_004152225.1 (calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothetical protein Csa_014965 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 4.5e-56
Identity = 114/128 (89.06%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVNLSSPRI+AKAA+TPKVQ LN GWL   W+QS +  AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRIMAKAAKTPKVQLLNVGWLRCSWKQSAQLGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLE+YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. NCBI nr
Match: XP_038903303.1 (calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-55
Identity = 115/128 (89.84%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATI GVNLSSPRIL KAA+TPKVQALN G L   W+QS RF A+RLRVPPVHAAPDKIS
Sbjct: 23  MATIYGVNLSSPRILPKAAKTPKVQALNVGSLRCSWKQSTRFGAVRLRVPPVHAAPDKIS 82

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLENYCKDNPET
Sbjct: 83  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 142

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 143 EECRTYDN 150

[Close]

BLAST of MS018989 vs. NCBI nr
Match: XP_022934393.1 (calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_022984077.1 calvin cycle protein CP12-2, chloroplastic-like [Cucurbita maxima] >KAG6581299.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018019.1 Calvin cycle protein CP12-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.9e-55
Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVNLSSPRILAKA E PK Q+ N G+L R W+QS +F AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAVEIPKPQSFNVGFLRRSWKQSTQFRAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. ExPASy Swiss-Prot
Match: Q9LZP9 (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 78/132 (59.09%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MATI-SGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPD-K 60
           MATI +G+N+++ R+   +   P V       L+  W    R T   +++ P+ AAP+  
Sbjct: 1   MATIATGLNIATQRVFVTSENRP-VCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGG 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKE--SDPLENYCKD 120
           ISD VE+SIK A+E CAGDPVSGEC AAWDEVEELSAAASHARDKKK   SDPLE YCKD
Sbjct: 61  ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKD 120

Query: 121 NPETEECRTYDN 129
           NPET ECRTYDN
Sbjct: 121 NPETNECRTYDN 131

[Close]

BLAST of MS018989 vs. ExPASy Swiss-Prot
Match: O22914 (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.4e-28
Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MATI--SGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDK 60
           M TI  +G+N+++PR++ +    P  + L    L+ PW    +F +++  V     +  +
Sbjct: 1   MTTIAAAGLNVATPRVVVR----PVARVLGPVRLNYPW----KFGSMKRMVVVKATSEGE 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKE--SDPLENYCKD 120
           IS+KVE+SI+ A+E CA DPVSGEC AAWDEVEELSAAASHARDKKK   SDPLE YC D
Sbjct: 61  ISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCND 120

Query: 121 NPETEECRTYDN 129
           NPET+ECRTYDN
Sbjct: 121 NPETDECRTYDN 124

[Close]

BLAST of MS018989 vs. ExPASy Swiss-Prot
Match: Q9C9K2 (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 57  DKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKK--ESDPLENYC 116
           +K+S+ +EE +K A E C  + +S EC  AWDEVEE+S A +  R K K    DPLE++C
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 117 KDNPETEECRTYDN 129
           ++NPET+ECR Y++
Sbjct: 121 QENPETDECRIYED 134

[Close]

BLAST of MS018989 vs. ExPASy Swiss-Prot
Match: A6Q0K5 (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CP12 PE=1 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-11
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 59  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKE----SDPLENYC 118
           ++ KV++++K AE+ACA    S +CA AWD VEELSAA SH +D  K     +DPLE +C
Sbjct: 35  LNKKVQDAVKEAEDACA-KGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFC 94

Query: 119 KDNPETEECRTYDN 129
           KD P+ +ECR Y++
Sbjct: 95  KDAPDADECRVYED 107

[Close]

BLAST of MS018989 vs. ExPASy TrEMBL
Match: A0A6J1DRE1 (calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111022459 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.0e-65
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. ExPASy TrEMBL
Match: A0A5D3E1R4 (Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001450 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVN+SSPRILAKAA+TPKVQ LN GWL   W+QS R  AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNISSPRILAKAAQTPKVQPLNVGWLRCSWKQSARVGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLENYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. ExPASy TrEMBL
Match: A0A1S3BZH5 (calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494733 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVN+SSPRILAKAA+TPKVQ LN GWL   W+QS R  AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNISSPRILAKAAQTPKVQPLNVGWLRCSWKQSARVGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLENYCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLENYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. ExPASy TrEMBL
Match: A0A0A0KTG0 (Chloroplast protein 12 OS=Cucumis sativus OX=3659 GN=Csa_4G003670 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.2e-56
Identity = 114/128 (89.06%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVNLSSPRI+AKAA+TPKVQ LN GWL   W+QS +  AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRIMAKAAKTPKVQLLNVGWLRCSWKQSAQLGAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARD+KKESDPLE+YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. ExPASy TrEMBL
Match: A0A6J1J155 (calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482497 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.4e-55
Identity = 114/128 (89.06%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   MATISGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDKIS 60
           MATISGVNLSSPRILAKA E PK Q+ N G+L R W+QS +F AIRLRVPPVHAAPDKIS
Sbjct: 1   MATISGVNLSSPRILAKAVEIPKPQSFNVGFLRRSWKQSTQFRAIRLRVPPVHAAPDKIS 60

Query: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLENYCKDNPET 120
           DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLE YCKDNPET
Sbjct: 61  DKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKESDPLETYCKDNPET 120

Query: 121 EECRTYDN 129
           EECRTYDN
Sbjct: 121 EECRTYDN 128

[Close]

BLAST of MS018989 vs. TAIR 10
Match: AT3G62410.1 (CP12 domain-containing protein 2 )

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 78/132 (59.09%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MATI-SGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPD-K 60
           MATI +G+N+++ R+   +   P V       L+  W    R T   +++ P+ AAP+  
Sbjct: 1   MATIATGLNIATQRVFVTSENRP-VCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGG 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKE--SDPLENYCKD 120
           ISD VE+SIK A+E CAGDPVSGEC AAWDEVEELSAAASHARDKKK   SDPLE YCKD
Sbjct: 61  ISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKD 120

Query: 121 NPETEECRTYDN 129
           NPET ECRTYDN
Sbjct: 121 NPETNECRTYDN 131

[Close]

BLAST of MS018989 vs. TAIR 10
Match: AT2G47400.1 (CP12 domain-containing protein 1 )

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-29
Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MATI--SGVNLSSPRILAKAAETPKVQALNGGWLHRPWRQSGRFTAIRLRVPPVHAAPDK 60
           M TI  +G+N+++PR++ +    P  + L    L+ PW    +F +++  V     +  +
Sbjct: 1   MTTIAAAGLNVATPRVVVR----PVARVLGPVRLNYPW----KFGSMKRMVVVKATSEGE 60

Query: 61  ISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKKE--SDPLENYCKD 120
           IS+KVE+SI+ A+E CA DPVSGEC AAWDEVEELSAAASHARDKKK   SDPLE YC D
Sbjct: 61  ISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCND 120

Query: 121 NPETEECRTYDN 129
           NPET+ECRTYDN
Sbjct: 121 NPETDECRTYDN 124

[Close]

BLAST of MS018989 vs. TAIR 10
Match: AT1G76560.1 (CP12 domain-containing protein 3 )

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-13
Identity = 36/74 (48.65%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 57  DKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDKKK--ESDPLENYC 116
           +K+S+ +EE +K A E C  + +S EC  AWDEVEE+S A +  R K K    DPLE++C
Sbjct: 61  EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFC 120

Query: 117 KDNPETEECRTYDN 129
           ++NPET+ECR Y++
Sbjct: 121 QENPETDECRIYED 134

The following BLAST results are available for this feature:

BLAST of MS018989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155326.1	4.1e-65	100.00	calvin cycle protein CP12-2, chloroplastic-like [Momordica charantia]	[more]
XP_008454293.1	4.1e-57	90.63	PREDICTED: calvin cycle protein CP12-2, chloroplastic [Cucumis melo] >KAA0044414...	[more]
XP_004152225.1	4.5e-56	89.06	calvin cycle protein CP12-2, chloroplastic [Cucumis sativus] >KGN52853.1 hypothe...	[more]
XP_038903303.1	2.3e-55	89.84	calvin cycle protein CP12-1, chloroplastic-like [Benincasa hispida]	[more]
XP_022934393.1	2.9e-55	89.06	calvin cycle protein CP12-2, chloroplastic-like [Cucurbita moschata] >XP_0229840...	[more]

BLAST of MS018989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZP9	1.8e-31	59.09	Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
O22914	2.4e-28	54.55	Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
Q9C9K2	1.4e-12	48.65	Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP...	[more]
A6Q0K5	1.6e-11	50.00	Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN...	[more]

BLAST of MS018989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRE1	2.0e-65	100.00	calvin cycle protein CP12-2, chloroplastic-like OS=Momordica charantia OX=3673 G...	[more]
A0A5D3E1R4	2.0e-57	90.63	Calvin cycle protein CP12-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BZH5	2.0e-57	90.63	calvin cycle protein CP12-2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034947...	[more]
A0A0A0KTG0	2.2e-56	89.06	Chloroplast protein 12 OS=Cucumis sativus OX=3659 GN=Csa_4G003670 PE=4 SV=1	[more]
A0A6J1J155	1.4e-55	89.06	calvin cycle protein CP12-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS018989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G62410.1	1.3e-32	59.09	CP12 domain-containing protein 2	[more]
AT2G47400.1	1.7e-29	54.55	CP12 domain-containing protein 1	[more]
AT1G76560.1	1.0e-13	48.65	CP12 domain-containing protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 59..128 e-value: 3.8E-30 score: 116.2
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 59..127 e-value: 1.5E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..128
None	No IPR available	PANTHER	PTHR33921:SF15	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 1..128
IPR039314	Calvin cycle protein CP12-like	PANTHER	PTHR33921	CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018989.1	MS018989.1	mRNA