MS018988 (gene) Bitter gourd (TR) v1

Overview


Name	MS018988
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome c oxidase subunit 5C-like
Location	scaffold20: 505352 .. 505543 (+)
RNA-Seq Expression	MS018988
Synteny	MS018988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATGGCTGGAAAAATTGTTCACGCCACCCTGAAAGGACCTAGCATTGTTAAGGAGATATGTGCGGCATCAGCTCTTGCTCTGTTTGCTGGTAGCTTCTGGAAAATTCATCAGTGGAATGAACAGAAGAGAGTAAAATCCTTCTATGACTTGCTGGAGAAAGGCGAAATTGCTGTTATCGCGCAGGAAGAG

mRNA sequence

GAAATGGCTGGAAAAATTGTTCACGCCACCCTGAAAGGACCTAGCATTGTTAAGGAGATATGTGCGGCATCAGCTCTTGCTCTGTTTGCTGGTAGCTTCTGGAAAATTCATCAGTGGAATGAACAGAAGAGAGTAAAATCCTTCTATGACTTGCTGGAGAAAGGCGAAATTGCTGTTATCGCGCAGGAAGAG

Coding sequence (CDS)

GAAATGGCTGGAAAAATTGTTCACGCCACCCTGAAAGGACCTAGCATTGTTAAGGAGATATGTGCGGCATCAGCTCTTGCTCTGTTTGCTGGTAGCTTCTGGAAAATTCATCAGTGGAATGAACAGAAGAGAGTAAAATCCTTCTATGACTTGCTGGAGAAAGGCGAAATTGCTGTTATCGCGCAGGAAGAG

Protein sequence

EMAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIAQEE

Homology

[Close]

BLAST of MS018988 vs. NCBI nr
Match: XP_022155327.1 (cytochrome c oxidase subunit 5C-like [Momordica charantia])

HSP 1 Score: 128.6 bits (322), Expect = 1.9e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 2  MAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIA 61
          MAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIA
Sbjct: 1  MAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIA 60

Query: 62 QEE 65
          QEE
Sbjct: 61 QEE 63

[Close]

BLAST of MS018988 vs. NCBI nr
Match: PON72390.1 (Cytochrome c oxidase subunit 5c [Trema orientale])

HSP 1 Score: 104.4 bits (259), Expect = 3.8e-19
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+C  +ALALFAGSFWK+H WNEQ++V++FYDLLEKGEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELCIGAALALFAGSFWKMHHWNEQRKVRTFYDLLEKGEIGVV 60

Query: 62 AQEE 65
           +EE
Sbjct: 61 VEEE 64

[Close]

BLAST of MS018988 vs. NCBI nr
Match: XP_016207559.2 (cytochrome c oxidase subunit 5C [Arachis ipaensis] >RYR01811.1 hypothetical protein Ahy_B06g080677 [Arachis hypogaea])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   EMAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAV 60
           EMAG +I HATLKGPS+VKEIC A+ L L AGS WK+H WNEQ++V++FYDLLEKGEI+V
Sbjct: 57  EMAGPRIAHATLKGPSVVKEICIATVLGLAAGSVWKMHHWNEQRKVRAFYDLLEKGEISV 116

Query: 61  IAQEE 65
           IAQEE
Sbjct: 117 IAQEE 121

[Close]

BLAST of MS018988 vs. NCBI nr
Match: KAG7025590.1 (Cytochrome c oxidase subunit 5C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 3  AGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIAQ 62
          AGK+ H TLKGPS+VKEI  A  +ALFAGSFWK+HQWNEQ++V++FYDLLEKGEI V+ Q
Sbjct: 3  AGKVAHVTLKGPSVVKEILTAMGVALFAGSFWKMHQWNEQRKVRAFYDLLEKGEIGVVVQ 62

Query: 63 EE 65
          E+
Sbjct: 63 EK 64

[Close]

BLAST of MS018988 vs. NCBI nr
Match: XP_015968791.2 (cytochrome c oxidase subunit 5C [Arachis duranensis] >RYR52197.1 hypothetical protein Ahy_A06g027118 [Arachis hypogaea])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   EMAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAV 60
           EMAG +I HATLKGPS+VKEIC A+ L L AGS WK+H WNEQ++V++FYDLLEKGEI+V
Sbjct: 57  EMAGPRIAHATLKGPSVVKEICIATVLGLAAGSVWKMHHWNEQRKVRAFYDLLEKGEISV 116

Query: 61  IAQEE 65
           IAQEE
Sbjct: 117 IAQEE 121

[Close]

BLAST of MS018988 vs. ExPASy Swiss-Prot
Match: Q9SXX7 (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica OX=39947 GN=COX5C PE=3 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 7.4e-18
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 4  GKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIAQE 63
          G+I HATLKGPS+VKEIC    L L AG  WK+H WNEQ++ +SFYD+LEKG+I+V+ +E
Sbjct: 4  GRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63

[Close]

BLAST of MS018988 vs. ExPASy Swiss-Prot
Match: O22912 (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana OX=3702 GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-17
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG K+ HATLKGPS+VKE+    AL L AG  WK+H WNEQ++ ++FYDLLE+GEI+V+
Sbjct: 1  MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

Query: 62 AQEE 65
          A EE
Sbjct: 61 AAEE 64

[Close]

BLAST of MS018988 vs. ExPASy Swiss-Prot
Match: Q9LZQ0 (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.2e-17
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG K+ HATLKGPS+VKE+     L L AG  WK+H WNEQ++ ++FYDLLE+GEI V+
Sbjct: 1  MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVV 60

Query: 62 AQEE 65
          A EE
Sbjct: 61 ASEE 64

[Close]

BLAST of MS018988 vs. ExPASy Swiss-Prot
Match: Q42841 (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare OX=4513 GN=COX5C PE=3 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-16
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4  GKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIAQE 63
          G++ HATLKGPS+VKEI     L L AG  WK+H WNEQ++ +SFYD+LEKG+I+V+ +E
Sbjct: 4  GRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63

[Close]

BLAST of MS018988 vs. ExPASy Swiss-Prot
Match: Q8VY39 (Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus OX=4232 GN=COX5C2 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-16
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 4  GKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIAQE 63
          G++ H  LKGPS+VKE+   + L L AG  WK+H WNEQ++ ++FYDLLEKGEI+V+  E
Sbjct: 4  GRVAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVVDE 63

Query: 64 E 65
          E
Sbjct: 64 E 64

[Close]

BLAST of MS018988 vs. ExPASy TrEMBL
Match: A0A6J1DP17 (cytochrome c oxidase subunit 5C-like OS=Momordica charantia OX=3673 GN=LOC111022461 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.1e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 2  MAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIA 61
          MAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIA
Sbjct: 1  MAGKIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVIA 60

Query: 62 QEE 65
          QEE
Sbjct: 61 QEE 63

[Close]

BLAST of MS018988 vs. ExPASy TrEMBL
Match: A0A2P5DGG9 (Cytochrome c oxidase subunit 5c OS=Trema orientale OX=63057 GN=TorRG33x02_251880 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+C  +ALALFAGSFWK+H WNEQ++V++FYDLLEKGEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELCIGAALALFAGSFWKMHHWNEQRKVRTFYDLLEKGEIGVV 60

Query: 62 AQEE 65
           +EE
Sbjct: 61 VEEE 64

[Close]

BLAST of MS018988 vs. ExPASy TrEMBL
Match: A0A2P5CKY2 (Cytochrome c oxidase subunit 5c OS=Parasponia andersonii OX=3476 GN=PanWU01x14_143710 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+C  +ALALFAGS WK+H WNEQ++V++FYDLLEKGEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELCIGAALALFAGSLWKMHHWNEQRKVRTFYDLLEKGEIGVV 60

Query: 62 AQEE 65
           +EE
Sbjct: 61 VEEE 64

[Close]

BLAST of MS018988 vs. ExPASy TrEMBL
Match: A0A445CMQ1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g027118 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   EMAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAV 60
           EMAG +I HATLKGPS+VKEIC A+ L L AGS WK+H WNEQ++V++FYDLLEKGEI+V
Sbjct: 57  EMAGPRIAHATLKGPSVVKEICIATVLGLAAGSVWKMHHWNEQRKVRAFYDLLEKGEISV 116

Query: 61  IAQEE 65
           IAQEE
Sbjct: 117 IAQEE 121

[Close]

BLAST of MS018988 vs. ExPASy TrEMBL
Match: A0A444YIS0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g080677 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.1e-19
Identity = 48/65 (73.85%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   EMAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAV 60
           EMAG +I HATLKGPS+VKEIC A+ L L AGS WK+H WNEQ++V++FYDLLEKGEI+V
Sbjct: 57  EMAGPRIAHATLKGPSVVKEICIATVLGLAAGSVWKMHHWNEQRKVRAFYDLLEKGEISV 116

Query: 61  IAQEE 65
           IAQEE
Sbjct: 117 IAQEE 121

[Close]

BLAST of MS018988 vs. TAIR 10
Match: AT2G47380.1 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-18
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG K+ HATLKGPS+VKE+    AL L AG  WK+H WNEQ++ ++FYDLLE+GEI+V+
Sbjct: 1  MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

Query: 62 AQEE 65
          A EE
Sbjct: 61 AAEE 64

[Close]

BLAST of MS018988 vs. TAIR 10
Match: AT5G61310.1 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+     L L AG  WK+H WNEQ++ + FYDLLE+GEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 62 AQEE 65
            EE
Sbjct: 61 VTEE 64

[Close]

BLAST of MS018988 vs. TAIR 10
Match: AT5G61310.2 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+     L L AG  WK+H WNEQ++ + FYDLLE+GEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 62 AQEE 65
            EE
Sbjct: 61 VTEE 64

[Close]

BLAST of MS018988 vs. TAIR 10
Match: AT5G61310.3 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+     L L AG  WK+H WNEQ++ + FYDLLE+GEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 62 AQEE 65
            EE
Sbjct: 61 VTEE 64

[Close]

BLAST of MS018988 vs. TAIR 10
Match: AT5G61310.4 (Cytochrome c oxidase subunit Vc family protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2  MAG-KIVHATLKGPSIVKEICAASALALFAGSFWKIHQWNEQKRVKSFYDLLEKGEIAVI 61
          MAG KI HATLKGPS+VKE+     L L AG  WK+H WNEQ++ + FYDLLE+GEI V+
Sbjct: 1  MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 62 AQEE 65
            EE
Sbjct: 61 VTEE 64

The following BLAST results are available for this feature:

BLAST of MS018988 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155327.1	1.9e-26	100.00	cytochrome c oxidase subunit 5C-like [Momordica charantia]	[more]
PON72390.1	3.8e-19	73.44	Cytochrome c oxidase subunit 5c [Trema orientale]	[more]
XP_016207559.2	1.9e-18	73.85	cytochrome c oxidase subunit 5C [Arachis ipaensis] >RYR01811.1 hypothetical prot...	[more]
KAG7025590.1	1.9e-18	70.97	Cytochrome c oxidase subunit 5C, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_015968791.2	1.9e-18	73.85	cytochrome c oxidase subunit 5C [Arachis duranensis] >RYR52197.1 hypothetical pr...	[more]

BLAST of MS018988 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SXX7	7.4e-18	61.67	Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica OX=39947 GN=COX5...	[more]
O22912	3.7e-17	62.50	Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q9LZQ0	8.2e-17	60.94	Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana OX=3702 GN=At3g62400 P...	[more]
Q42841	1.8e-16	58.33	Cytochrome c oxidase subunit 5C OS=Hordeum vulgare OX=4513 GN=COX5C PE=3 SV=3	[more]
Q8VY39	5.3e-16	55.74	Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus OX=4232 GN=COX5C2 PE=3 SV...	[more]

BLAST of MS018988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP17	9.1e-27	100.00	cytochrome c oxidase subunit 5C-like OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2P5DGG9	1.8e-19	73.44	Cytochrome c oxidase subunit 5c OS=Trema orientale OX=63057 GN=TorRG33x02_251880...	[more]
A0A2P5CKY2	9.1e-19	71.88	Cytochrome c oxidase subunit 5c OS=Parasponia andersonii OX=3476 GN=PanWU01x14_1...	[more]
A0A445CMQ1	9.1e-19	73.85	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A06g027118 PE=3 SV=1	[more]
A0A444YIS0	9.1e-19	73.85	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B06g080677 PE=3 SV=1	[more]

BLAST of MS018988 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47380.1	2.6e-18	62.50	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.1	3.8e-17	60.94	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.2	3.8e-17	60.94	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.3	3.8e-17	60.94	Cytochrome c oxidase subunit Vc family protein	[more]
AT5G61310.4	3.8e-17	60.94	Cytochrome c oxidase subunit Vc family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008432	Cytochrome c oxidase subunit 5c	PANTHER	PTHR34372	CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATED	coord: 3..64
None	No IPR available	PANTHER	PTHR34372:SF2	CYTOCHROME C OXIDASE SUBUNIT 5C-2-RELATED	coord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018988.1	MS018988.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005746	mitochondrial respirasome