MS018984 (gene) Bitter gourd (TR) v1

Overview


Name	MS018984
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein TIC 214
Location	scaffold20: 476198 .. 476467 (-)
RNA-Seq Expression	MS018984
Synteny	MS018984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGTCAAACCATAGGCATTTCATTGGTTCATCAGAATAAGTACCAAATTAATCAAAGATATCAAGAAAAACGCTATCCTCGTAAGAAGATTTTTGCTGAAACATTGCAATACATAAAAAAAACAAATGAAATAGAGTCAGCAATCATTATGATTTGCTTGTTCTAAAAAATACTTCTCCCCTACTCCCCTAGAGGTCGTAGAGAGTTCAAAATTTTAATTTGTTTAAATTCTCGGAATAGAAAAGATATCCATAGAAATACAGCATTT

mRNA sequence

CAAAGTCAAACCATAGGCATTTCATTGGTTCATCAGAATAAGTACCAAATTAATCAAAGATATCAAGAAAAACGCTATCCTCGTAAGAAGATTTTTGCTGAAACATTGCAATACATAAAAAAAACAAATAATAGAGTCAGCAATCATTATGATTTGCTTGTTCTAAAAAATCTCCCCTACTCCCCTAGAGGTCGTAGAGAGTTCAAAATTTTAATTTGTTTAAATTCTCGGAATAGAAAAGATATCCATAGAAATACAGCATTT

Coding sequence (CDS)

CAAAGTCAAACCATAGGCATTTCATTGGTTCATCAGAATAAGTACCAAATTAATCAAAGATATCAAGAAAAACGCTATCCTCGTAAGAAGATTTTTGCTGAAACATTGCAATACATAAAAAAAACAAATAATAGAGTCAGCAATCATTATGATTTGCTTGTTCTAAAAAATCTCCCCTACTCCCCTAGAGGTCGTAGAGAGTTCAAAATTTTAATTTGTTTAAATTCTCGGAATAGAAAAGATATCCATAGAAATACAGCATTT

Protein sequence

QSQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTNNRVSNHYDLLVLKNLPYSPRGRREFKILICLNSRNRKDIHRNTAF

Homology

[Close]

BLAST of MS018984 vs. NCBI nr
Match: YP_009753666.1 (Ycf1 protein [Trichosanthes wallichiana] >QIT04685.1 Ycf1 protein [Trichosanthes wallichiana])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1691 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRTSNHYDLLVPENI-L 1750

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1751 SPRGRREFRILICFNSRNRNDIHRNTAF 1777

[Close]

BLAST of MS018984 vs. NCBI nr
Match: YP_009738261.1 (Ycf1 [Siraitia siamensis] >QIB71654.1 Ycf1 [Siraitia siamensis])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1690 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRTSNHYDLLVPENI-L 1749

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1750 SPRGRREFRILICFNSRNRNDIHRNTAF 1776

[Close]

BLAST of MS018984 vs. NCBI nr
Match: YP_009752977.1 (Ycf1 protein [Momordica sessilifolia] >QIT06049.1 Ycf1 protein [Momordica sessilifolia])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1721 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRASNHYDLLVPENI-L 1780

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1781 SPRGRREFRILICFNSRNRNDIHRNTAF 1807

[Close]

BLAST of MS018984 vs. NCBI nr
Match: QJS52310.1 (hypothetical protein RF1 [Indofevillea khasiana])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1736 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRASNHYDLLVPENI-L 1795

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1796 SPRGRREFRILICFNSRNRNDIHRNTAF 1822

[Close]

BLAST of MS018984 vs. NCBI nr
Match: YP_009751879.1 (Ycf1 protein [Indofevillea khasiana] >QIT04612.1 Ycf1 protein [Indofevillea khasiana])

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1739 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRASNHYDLLVPENI-L 1798

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1799 SPRGRREFRILICFNSRNRNDIHRNTAF 1825

[Close]

BLAST of MS018984 vs. ExPASy Swiss-Prot
Match: Q4VZL0 (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQ-YIKKTNNRVSNHYDLLVLKNLPY 61
            SQTIGISLV +NKYQ+NQRYQEK YP K+ FAE++  + K+T NR SNHYDLLV +N+  
Sbjct: 1720 SQTIGISLVQKNKYQLNQRYQEKGYPYKRSFAESIAIHQKRTENRTSNHYDLLVPENI-L 1779

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NS N+ DIHRNTAF
Sbjct: 1780 SPRGRREFRILICFNSGNKNDIHRNTAF 1806

[Close]

BLAST of MS018984 vs. ExPASy Swiss-Prot
Match: Q68RU8 (Protein TIC 214 OS=Panax ginseng OX=4054 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.6e-16
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 3    QTIGISLVHQNKYQINQRYQEKRYPRKKIFAE-TLQYIKKTNNRVSNHYDLLVLKNLPYS 62
            QTIGISL+H++KYQ NQRY+E+RY  KK F E T +Y ++T NR  NHYD LV + +  S
Sbjct: 1764 QTIGISLIHKSKYQTNQRYREQRYIDKKKFDESTPRYQRRTGNRDKNHYDFLVPEKI-LS 1823

Query: 63   PRGRREFKILICLNSRNRKDIHRNTAF 89
             R RRE +ILI  NSR+RK +  N  F
Sbjct: 1824 SRRRRELRILIHFNSRSRKGVDSNPVF 1849

[Close]

BLAST of MS018984 vs. ExPASy Swiss-Prot
Match: Q0ZIW0 (Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-15
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 3    QTIGISLVHQNKYQINQRYQEKRY-PRKKIFAETLQYIKKTNNRVSNHYDLLVLKNLPYS 62
            QTIGISLVH++KYQ NQRY+E+RY   K     + +  K   N+  NHYDLLV +N+  S
Sbjct: 1736 QTIGISLVHKSKYQTNQRYREERYVDNKNCDKFSARCQKMIGNKDKNHYDLLVPENI-LS 1795

Query: 63   PRGRREFKILICLNSRNRKDIHRNTAF 89
            PR RR+F+ILIC N RNR  + RN  F
Sbjct: 1796 PRRRRKFRILICFNLRNRSGVARNPVF 1821

[Close]

BLAST of MS018984 vs. ExPASy Swiss-Prot
Match: A0ZZ93 (Protein TIC 214 OS=Gossypium barbadense OX=3634 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-15
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 3    QTIGISLVHQNKYQINQRYQEKRYPRKKIFAETL-QYIKKTNNRVSNHYDLLVLKNLPYS 62
            QTI I LVH+NK+QINQRYQEK Y  K  F E + ++ K T N+  NHYDL V +N+  S
Sbjct: 1734 QTISILLVHKNKHQINQRYQEKNYIDKNHFYEFIARHQKMTENKDKNHYDLFVPENI-LS 1793

Query: 63   PRGRREFKILICLNSRNRKDIHRNTAF 89
            P  RRE +I I  NSR++  +HRN  F
Sbjct: 1794 PNHRRELRIRISFNSRDKNGMHRNAVF 1819

[Close]

BLAST of MS018984 vs. ExPASy Swiss-Prot
Match: Q2L951 (Protein TIC 214 OS=Gossypium hirsutum OX=3635 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-15
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 3    QTIGISLVHQNKYQINQRYQEKRYPRKKIFAETL-QYIKKTNNRVSNHYDLLVLKNLPYS 62
            QTI I LVH+NK+QINQRYQEK Y  K  F E + ++ K T N+  NHYDL V +N+  S
Sbjct: 1737 QTISILLVHKNKHQINQRYQEKNYIDKNHFYEFIARHQKMTENKDKNHYDLFVPENI-LS 1796

Query: 63   PRGRREFKILICLNSRNRKDIHRNTAF 89
            P  RRE +I I  NSR++  +HRN  F
Sbjct: 1797 PNHRRELRIRISFNSRDKNGMHRNAVF 1822

[Close]

BLAST of MS018984 vs. ExPASy TrEMBL
Match: A0A515BLT2 (Protein TIC 214 OS=Siraitia grosvenorii OX=190515 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1690 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRTSNHYDLLVPENI-L 1749

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1750 SPRGRREFRILICFNSRNRNDIHRNTAF 1776

[Close]

BLAST of MS018984 vs. ExPASy TrEMBL
Match: A0A6H0ESM5 (Protein TIC 214 OS=Trichosanthes tricuspidata OX=654837 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1691 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRTSNHYDLLVPENI-L 1750

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1751 SPRGRREFRILICFNSRNRNDIHRNTAF 1777

[Close]

BLAST of MS018984 vs. ExPASy TrEMBL
Match: A0A6C0U995 (Protein TIC 214 OS=Siraitia siamensis OX=2695833 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1690 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRTSNHYDLLVPENI-L 1749

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1750 SPRGRREFRILICFNSRNRNDIHRNTAF 1776

[Close]

BLAST of MS018984 vs. ExPASy TrEMBL
Match: A0A6M4SS32 (Protein TIC 214 OS=Indofevillea khasiana OX=383665 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1736 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRASNHYDLLVPENI-L 1795

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1796 SPRGRREFRILICFNSRNRNDIHRNTAF 1822

[Close]

BLAST of MS018984 vs. ExPASy TrEMBL
Match: A0A6H0EQJ7 (Protein TIC 214 OS=Indofevillea khasiana OX=383665 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-27
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 2    SQTIGISLVHQNKYQINQRYQEKRYPRKKIFAETLQYIKKTN-NRVSNHYDLLVLKNLPY 61
            SQTIGISLVH+NKYQINQRYQEK YP KK FAE++   +KTN NR SNHYDLLV +N+  
Sbjct: 1739 SQTIGISLVHKNKYQINQRYQEKGYPDKKSFAESIAIHQKTNENRASNHYDLLVPENI-L 1798

Query: 62   SPRGRREFKILICLNSRNRKDIHRNTAF 89
            SPRGRREF+ILIC NSRNR DIHRNTAF
Sbjct: 1799 SPRGRREFRILICFNSRNRNDIHRNTAF 1825

[Close]

BLAST of MS018984 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.2e-13
Identity = 39/87 (44.83%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 3    QTIGISLVHQNKYQINQRYQEKRYPRKKIFAETL-QYIKKTNNRVSNHYDLLVLKNLPYS 62
            +TIGISLVH+NK++I++RY++K Y  KK F +++ +Y  KT N+  N+YD  V + +  S
Sbjct: 1629 RTIGISLVHKNKHKISKRYKKKSYINKKFFEKSITKYQNKTVNKKKNNYDFFVPEKI-LS 1688

Query: 63   PRGRREFKILICLNSRNRKDIHRNTAF 89
            P+ RREF+ILIC N + +     N+ F
Sbjct: 1689 PKRRREFRILICFNLKKKNARDTNSRF 1714

The following BLAST results are available for this feature:

BLAST of MS018984 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009753666.1	1.5e-26	77.27	Ycf1 protein [Trichosanthes wallichiana] >QIT04685.1 Ycf1 protein [Trichosanthes...	[more]
YP_009738261.1	1.5e-26	77.27	Ycf1 [Siraitia siamensis] >QIB71654.1 Ycf1 [Siraitia siamensis]	[more]
YP_009752977.1	1.5e-26	77.27	Ycf1 protein [Momordica sessilifolia] >QIT06049.1 Ycf1 protein [Momordica sessil...	[more]
QJS52310.1	1.5e-26	77.27	hypothetical protein RF1 [Indofevillea khasiana]	[more]
YP_009751879.1	1.5e-26	77.27	Ycf1 protein [Indofevillea khasiana] >QIT04612.1 Ycf1 protein [Indofevillea khas...	[more]

BLAST of MS018984 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL0	1.6e-26	70.45	Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2	[more]
Q68RU8	5.6e-16	55.17	Protein TIC 214 OS=Panax ginseng OX=4054 GN=TIC214 PE=3 SV=1	[more]
Q0ZIW0	1.2e-15	54.02	Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1	[more]
A0ZZ93	3.6e-15	52.87	Protein TIC 214 OS=Gossypium barbadense OX=3634 GN=TIC214 PE=3 SV=1	[more]
Q2L951	3.6e-15	52.87	Protein TIC 214 OS=Gossypium hirsutum OX=3635 GN=TIC214 PE=3 SV=1	[more]

BLAST of MS018984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A515BLT2	7.3e-27	77.27	Protein TIC 214 OS=Siraitia grosvenorii OX=190515 GN=ycf1 PE=3 SV=1	[more]
A0A6H0ESM5	7.3e-27	77.27	Protein TIC 214 OS=Trichosanthes tricuspidata OX=654837 GN=ycf1 PE=3 SV=1	[more]
A0A6C0U995	7.3e-27	77.27	Protein TIC 214 OS=Siraitia siamensis OX=2695833 GN=ycf1 PE=3 SV=1	[more]
A0A6M4SS32	7.3e-27	77.27	Protein TIC 214 OS=Indofevillea khasiana OX=383665 GN=ycf1 PE=3 SV=1	[more]
A0A6H0EQJ7	7.3e-27	77.27	Protein TIC 214 OS=Indofevillea khasiana OX=383665 GN=ycf1 PE=3 SV=1	[more]

BLAST of MS018984 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	1.2e-13	44.83	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33163:SF27	PROTEIN TIC 214	coord: 3..88
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018984.1	MS018984.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane