MS018968 (gene) Bitter gourd (TR) v1

Overview
NameMS018968
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold20: 325692 .. 327313 (+)
RNA-Seq ExpressionMS018968
SyntenyMS018968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTATCAACAAAAGCAAGGAAATGGAAGCTGCAGCAGACGAGTTTGTATACAGAATCAGTACATCCAAGGAGTGGGAAGAGTCGCGGAGCGCTGGTCATATCTATGGCGGAGAATTCGACAACGTCTCTGGATTCATTCATCTCAGTAACCTCAATCAGGTTCTATCTCTTATTTAATCCGAATCTCTATTTTCCTGTCGCCATAGAACATCATTCCTCTTTCCACCGACAATGCTACATTCTATCGACGATATAGGAATCCTCATTTCATCTTGCGATGTGATTGATTGTTACTTAGGGTAAACTTTGTCCTCGTTCGTAAATTTTGGTTGACTATATTACAAGTATTCATTAACTTTTTGCTTGCCGACACGAATCGGTTGCGTCAACTTGAAGTTGAAATCTAATTTAGAGACCTTGACTATGGTTTCACCGACATACAATATCAGGCGGTCGCCCTTAAGTCTTTGAAAACCTTCGATTATGAGAGAACTAAAGGTTGAACGAGAAATGATAAGATTATTTAACAGTGAGATCTGGAAACTGGTTTATGTTTGCAGGTCCAGCCAACTTTGCAGAATTTCTTCCAGAATACCAAGGAGGAATTGTATCTCCTTCAGATTGAGGCCAAAAAGGTAGAAGAACACATTTTTCTCTCTCTCTCGTGACTGCAAGGGAGAACATAAGTTTCATGTGATTTTGTACTTCTCCTGATCTTTACATGTGTATACTGTATGGTTTTGATATTTTGATATGATGATCAACTATTACAATGAAAAGTTTAATGAAGACTGCACTTTGAAAAGTATGTTTGTGGGATCCAGCTTGTCCACATCCACGAAACACAATGGATATAGATGTTGACAAATTATATGTTTAACCAAATAACATTGGTTTAAGGCCCTGGTTATACTCGAAGGAACAATCTATGGCTTGTGCGGAAAATGTGTTGAAGAATGTTTTCTAATACTTGCTCCCAAGGGGCAGTCCAGTTGACAAAGGGCTTGGAGTCTGTTGGTTATACTAGCTCAAAGGTCGAATCTTTTGGAGCTTAATACCAAAAATCCTTTATGTTTCCCGAGTCCGGGCCTTGGGATGGGCGCGGGTACCCTTGGGTATATGGGAGCAAAGCTCCGATTCCCAGTTCTAAAAAAAAAGAAGAATGTTTTGTAATGCTTAAGTGGCTTCTTGTATATTTGGAAGTTAGGTTTGTAGTTATTTGGTTTGACCTATGTGAATAATGCATTTAACTCAGTTCATCAATTAGTAGAAATTAGTTGTATGCAATTCATCCATGTAGAATAAGGTGATTTCAGACTTTTTTTAGTCTATTATTTTTCTAAAAAAATTATTATCACAGGGATGTTGTACAGCTTTCTATCCGCCTATTTTTTTTTCCATTCTCCATGTTCTTACATTGCGCTTCTCTATACTTGATATTACATGAGCTTTTTTCTTTGCAGCTTGGTGATGGATTGATTTATGAACTTGTGGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCTTCTCGAAGCTTCAGCCCTATCCCAATAGATGCAGTAACCAAAGCAGAGAAACTAACTCTTTCTGGTGGTCGATATGCTTGTAGTTTTCTCGAA

mRNA sequence

TCTATCAACAAAAGCAAGGAAATGGAAGCTGCAGCAGACGAGTTTGTATACAGAATCAGTACATCCAAGGAGTGGGAAGAGTCGCGGAGCGCTGGTCATATCTATGGCGGAGAATTCGACAACGTCTCTGGATTCATTCATCTCAGTAACCTCAATCAGGTCCAGCCAACTTTGCAGAATTTCTTCCAGAATACCAAGGAGGAATTGTATCTCCTTCAGATTGAGGCCAAAAAGCTTGGTGATGGATTGATTTATGAACTTGTGGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCTTCTCGAAGCTTCAGCCCTATCCCAATAGATGCAGTAACCAAAGCAGAGAAACTAACTCTTTCTGGTGGTCGATATGCTTGTAGTTTTCTCGAA

Coding sequence (CDS)

TCTATCAACAAAAGCAAGGAAATGGAAGCTGCAGCAGACGAGTTTGTATACAGAATCAGTACATCCAAGGAGTGGGAAGAGTCGCGGAGCGCTGGTCATATCTATGGCGGAGAATTCGACAACGTCTCTGGATTCATTCATCTCAGTAACCTCAATCAGGTCCAGCCAACTTTGCAGAATTTCTTCCAGAATACCAAGGAGGAATTGTATCTCCTTCAGATTGAGGCCAAAAAGCTTGGTGATGGATTGATTTATGAACTTGTGGATGGTTCCAATAGCTTCCCTCATTTCTATGGTCCTTCTCGAAGCTTCAGCCCTATCCCAATAGATGCAGTAACCAAAGCAGAGAAACTAACTCTTTCTGGTGGTCGATATGCTTGTAGTTTTCTCGAA

Protein sequence

SINKSKEMEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSFLE
Homology
BLAST of MS018968 vs. NCBI nr
Match: XP_022157011.1 (uncharacterized protein LOC111023838 [Momordica charantia])

HSP 1 Score: 252.7 bits (644), Expect = 1.8e-63
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 8   MEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKE 67
           MEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKE
Sbjct: 1   MEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKE 60

Query: 68  ELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYAC 127
           ELYLLQIE KKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYAC
Sbjct: 61  ELYLLQIETKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYAC 120

Query: 128 SFLE 132
           SFLE
Sbjct: 121 SFLE 124

BLAST of MS018968 vs. NCBI nr
Match: KAG6606920.1 (hypothetical protein SDJN03_00262, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036624.1 hypothetical protein SDJN02_00243 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 103/122 (84.43%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 10  AAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEEL 69
           A A+EFVYRIS SKEWE S+S G+++GG+FD  SGFIHLSNLNQVQ TLQNFF N+KEEL
Sbjct: 13  AVAEEFVYRISPSKEWEHSQSVGYLHGGDFDTSSGFIHLSNLNQVQSTLQNFFLNSKEEL 72

Query: 70  YLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSF 129
           YLLQIEAKKLGDGL+YELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLT S GR+ACSF
Sbjct: 73  YLLQIEAKKLGDGLVYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTFSDGRFACSF 132

Query: 130 LE 132
           LE
Sbjct: 133 LE 134

BLAST of MS018968 vs. NCBI nr
Match: XP_038905017.1 (uncharacterized protein LOC120091189 [Benincasa hispida])

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 103/126 (81.75%), Postives = 112/126 (88.89%), Query Frame = 0

Query: 6   KEMEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNT 65
           +E  AA ++FVYRISTSKEW+ES+  GHIYGG+FD  SGFIHLSNLNQVQ TLQNFF N 
Sbjct: 7   EEKSAATEDFVYRISTSKEWDESQRVGHIYGGDFDKSSGFIHLSNLNQVQSTLQNFFLNI 66

Query: 66  KEELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRY 125
           K+ELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSF PIP+DAVTKAEKLT S GR+
Sbjct: 67  KDELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFRPIPMDAVTKAEKLTFSDGRF 126

Query: 126 ACSFLE 132
            CSFLE
Sbjct: 127 TCSFLE 132

BLAST of MS018968 vs. NCBI nr
Match: XP_022948943.1 (uncharacterized protein LOC111452443 [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 103/122 (84.43%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 10  AAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEEL 69
           A A+EFVYRIS SKEWE S+S G+++GG+FD  SGFIHLSNLNQVQ TLQNFF N+KEEL
Sbjct: 13  AVAEEFVYRISPSKEWEHSQSVGYLHGGDFDTSSGFIHLSNLNQVQSTLQNFFLNSKEEL 72

Query: 70  YLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSF 129
           YLLQIEAKKLGDGL+YELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLT S GR+ACSF
Sbjct: 73  YLLQIEAKKLGDGLVYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTFSDGRFACSF 132

Query: 130 LE 132
           LE
Sbjct: 133 LE 134

BLAST of MS018968 vs. NCBI nr
Match: XP_023525461.1 (uncharacterized protein LOC111789057 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023525462.1 uncharacterized protein LOC111789057 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 4.1e-52
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 10  AAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEEL 69
           A A+EFVYRIS SKEWE S+S G+++GG+FD  SGFIHLSNLNQVQ TLQNFF N+KEEL
Sbjct: 13  AVAEEFVYRISPSKEWEHSKSVGYLHGGDFDTSSGFIHLSNLNQVQSTLQNFFLNSKEEL 72

Query: 70  YLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSF 129
           YLLQIEAKKLGDGL+YELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLT S G++ACSF
Sbjct: 73  YLLQIEAKKLGDGLVYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTFSDGQFACSF 132

Query: 130 LE 132
           LE
Sbjct: 133 LE 134

BLAST of MS018968 vs. ExPASy TrEMBL
Match: A0A6J1DWP8 (uncharacterized protein LOC111023838 OS=Momordica charantia OX=3673 GN=LOC111023838 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.5e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query: 8   MEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKE 67
           MEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKE
Sbjct: 1   MEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKE 60

Query: 68  ELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYAC 127
           ELYLLQIE KKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYAC
Sbjct: 61  ELYLLQIETKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYAC 120

Query: 128 SFLE 132
           SFLE
Sbjct: 121 SFLE 124

BLAST of MS018968 vs. ExPASy TrEMBL
Match: A0A6J1GAQ2 (uncharacterized protein LOC111452443 OS=Cucurbita moschata OX=3662 GN=LOC111452443 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.8e-53
Identity = 103/122 (84.43%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 10  AAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEEL 69
           A A+EFVYRIS SKEWE S+S G+++GG+FD  SGFIHLSNLNQVQ TLQNFF N+KEEL
Sbjct: 13  AVAEEFVYRISPSKEWEHSQSVGYLHGGDFDTSSGFIHLSNLNQVQSTLQNFFLNSKEEL 72

Query: 70  YLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSF 129
           YLLQIEAKKLGDGL+YELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLT S GR+ACSF
Sbjct: 73  YLLQIEAKKLGDGLVYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTFSDGRFACSF 132

Query: 130 LE 132
           LE
Sbjct: 133 LE 134

BLAST of MS018968 vs. ExPASy TrEMBL
Match: A0A6J1K865 (uncharacterized protein LOC111493116 OS=Cucurbita maxima OX=3661 GN=LOC111493116 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.6e-52
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0

Query: 10  AAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEEL 69
           A A+EFVYRIS SKEWE S+S G+++GG+FD  SGFIHLSNLNQVQ TLQNFF N+KEEL
Sbjct: 13  AVAEEFVYRISPSKEWEHSQSVGYLHGGDFDTSSGFIHLSNLNQVQSTLQNFFLNSKEEL 72

Query: 70  YLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSF 129
           YLLQIEAKKLGDGL+YELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLT S G++ACSF
Sbjct: 73  YLLQIEAKKLGDGLVYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTFSDGQFACSF 132

Query: 130 LE 132
           LE
Sbjct: 133 LE 134

BLAST of MS018968 vs. ExPASy TrEMBL
Match: A0A5D3DA97 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00710 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 0

Query: 7   EMEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTK 66
           E  AA +EFVYRISTSKEW+ES+  GHIYGG  D  SGFIHLSNLNQVQ TLQNFF N K
Sbjct: 8   ENSAATEEFVYRISTSKEWDESQRLGHIYGGHLDKSSGFIHLSNLNQVQSTLQNFFLNVK 67

Query: 67  EELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYA 126
           ++LYLLQIEAKKLGDGLIYELVDG NSFPHFYGPSRSFSPIP+DAVTKA+K+T S GR++
Sbjct: 68  DQLYLLQIEAKKLGDGLIYELVDGYNSFPHFYGPSRSFSPIPMDAVTKADKITFSDGRFS 127

Query: 127 CSFLE 132
           CS LE
Sbjct: 128 CSLLE 132

BLAST of MS018968 vs. ExPASy TrEMBL
Match: A0A1S3BHG9 (uncharacterized protein LOC103489901 OS=Cucumis melo OX=3656 GN=LOC103489901 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 0

Query: 7   EMEAAADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTK 66
           E  AA +EFVYRISTSKEW+ES+  GHIYGG  D  SGFIHLSNLNQVQ TLQNFF N K
Sbjct: 8   ENSAATEEFVYRISTSKEWDESQRLGHIYGGHLDKSSGFIHLSNLNQVQSTLQNFFLNVK 67

Query: 67  EELYLLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYA 126
           ++LYLLQIEAKKLGDGLIYELVDG NSFPHFYGPSRSFSPIP+DAVTKA+K+T S GR++
Sbjct: 68  DQLYLLQIEAKKLGDGLIYELVDGYNSFPHFYGPSRSFSPIPMDAVTKADKITFSDGRFS 127

Query: 127 CSFLE 132
           CS LE
Sbjct: 128 CSLLE 132

BLAST of MS018968 vs. TAIR 10
Match: AT4G01897.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). )

HSP 1 Score: 158.7 bits (400), Expect = 3.2e-39
Identity = 73/120 (60.83%), Postives = 90/120 (75.00%), Query Frame = 0

Query: 11  AADEFVYRISTSKEWEESRSAGHIYGGEFDNVSGFIHLSNLNQVQPTLQNFFQNTKEELY 70
           A +EF+YRIST +EWEE +  G  YG E D  + + HLS L+QVQ TL+NFF + KE LY
Sbjct: 2   AEEEFIYRISTEQEWEEFKKNGSSYGAEIDKSTCYYHLSKLDQVQLTLKNFFVDVKEYLY 61

Query: 71  LLQIEAKKLGDGLIYELVDGSNSFPHFYGPSRSFSPIPIDAVTKAEKLTLSGGRYACSFL 130
           LLQ++ KKLGDGLIYE VD  NSFPHFYGP ++F P+P+D+V KAEKLT   G + CSFL
Sbjct: 62  LLQVDPKKLGDGLIYEAVDEVNSFPHFYGPDKTFVPLPLDSVVKAEKLTFINGNFTCSFL 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157011.11.8e-6399.19uncharacterized protein LOC111023838 [Momordica charantia][more]
KAG6606920.11.8e-5284.43hypothetical protein SDJN03_00262, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038905017.11.8e-5281.75uncharacterized protein LOC120091189 [Benincasa hispida][more]
XP_022948943.11.8e-5284.43uncharacterized protein LOC111452443 [Cucurbita moschata][more]
XP_023525461.14.1e-5283.61uncharacterized protein LOC111789057 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWP88.5e-6499.19uncharacterized protein LOC111023838 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1GAQ28.8e-5384.43uncharacterized protein LOC111452443 OS=Cucurbita moschata OX=3662 GN=LOC1114524... [more]
A0A6J1K8652.6e-5283.61uncharacterized protein LOC111493116 OS=Cucurbita maxima OX=3661 GN=LOC111493116... [more]
A0A5D3DA972.4e-5079.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BHG92.4e-5079.20uncharacterized protein LOC103489901 OS=Cucumis melo OX=3656 GN=LOC103489901 PE=... [more]
Match NameE-valueIdentityDescription
AT4G01897.13.2e-3960.83unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 ... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009297Protein of unknown function DUF952PFAMPF06108DUF952coord: 20..114
e-value: 8.7E-24
score: 83.3
IPR009297Protein of unknown function DUF952PANTHERPTHR34129BLR1139 PROTEINcoord: 10..130
NoneNo IPR availableGENE3D3.20.170.20Protein of unknown function DUF952coord: 14..126
e-value: 1.6E-27
score: 97.5
NoneNo IPR availableSUPERFAMILY56399ADP-ribosylationcoord: 15..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018968.1MS018968.1mRNA