MS018920 (gene) Bitter gourd (TR) v1

Overview


Name	MS018920
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Telomere maintenance component 1, putative isoform 1
Location	scaffold89: 415257 .. 415634 (-)
RNA-Seq Expression	MS018920
Synteny	MS018920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAGCCGTACGGCGGCCATCTCAGCAACGGCTCCGTGGGTCCGGTCATCGGCGTCCTCGTCGTCATCATTGTCTTCGCCGTGGTCGCCGTCGTGGTCGGGCGGCTGTGCTCGGGGAAGACCATCATGGGCTACGGCCATTTCGATTTGGAGAGCTGGGCGGAGACCAAATGCTCCTCTTGCATCGACGGAAGAATCAGCCCGCCGCCCCCGAGGGCCAATGTCTCCGCCGCCACCACCGCCACCGCTCTTCCGGCGACAATGGCCGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCATCTGCCACCAACGCT

mRNA sequence

ATGTCGCTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAGCCGTACGGCGGCCATCTCAGCAACGGCTCCGTGGGTCCGGTCATCGGCGTCCTCGTCGTCATCATTGTCTTCGCCGTGGTCGCCGTCGTGGTCGGGCGGCTGTGCTCGGGGAAGACCATCATGGGCTACGGCCATTTCGATTTGGAGAGCTGGGCGGAGACCAAATGCTCCTCTTGCATCGACGGAAGAATCAGCCCGCCGCCCCCGAGGGCCAATGTCTCCGCCGCCACCACCGCCACCGCTCTTCCGGCGACAATGGCCGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCATCTGCCACCAACGCT

Coding sequence (CDS)

ATGTCGCTCCCAATTGAACAACAATCTCCGCCGGCGCCGGGAATGCAGCAGCCGTACGGCGGCCATCTCAGCAACGGCTCCGTGGGTCCGGTCATCGGCGTCCTCGTCGTCATCATTGTCTTCGCCGTGGTCGCCGTCGTGGTCGGGCGGCTGTGCTCGGGGAAGACCATCATGGGCTACGGCCATTTCGATTTGGAGAGCTGGGCGGAGACCAAATGCTCCTCTTGCATCGACGGAAGAATCAGCCCGCCGCCCCCGAGGGCCAATGTCTCCGCCGCCACCACCGCCACCGCTCTTCCGGCGACAATGGCCGTCCAAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCTCAAAATCCATCTGCCACCAACGCT

Protein sequence

MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGYGHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQNPSATNA

Homology

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BLAST of MS018920 vs. NCBI nr
Match: XP_022144319.1 (uncharacterized protein LOC111014030 [Momordica charantia])

HSP 1 Score: 241.5 bits (615), Expect = 3.9e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY
Sbjct: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120

Query: 121 PSATNA 127
           PSATNA
Sbjct: 121 PSATNA 126

[Close]

BLAST of MS018920 vs. NCBI nr
Match: XP_031737057.1 (uncharacterized protein LOC116402140 [Cucumis sativus] >KGN62547.1 hypothetical protein Csa_022283 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 5.1e-44
Identity = 102/124 (82.26%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MSLPIEQQSP  PGMQQ Y GH  +GSVGPVIGVL+VIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPA-TMAVQTQQETKQEEPASQ 120
           GHFDLESWAETKCSSCIDGRI+PPPPR + S    A++LPA TMAV TQQETKQEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQETKQEEPASQ 120

Query: 121 NPSA 124
           NPSA
Sbjct: 121 NPSA 122

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BLAST of MS018920 vs. NCBI nr
Match: KAG6598392.1 (hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 102/124 (82.26%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MSLPIEQQSPPA GM  PYGGH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG +IMGY
Sbjct: 1   MSLPIEQQSPPATGMLPPYGGHPVSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGMSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRIS  PPR NVS A  A+    TMAV+TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRISSTPPRVNVSPA--ASLPTGTMAVRTQQETKQEEPASQN 120

Query: 121 PSAT 125
           P+A+
Sbjct: 121 PTAS 122

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BLAST of MS018920 vs. NCBI nr
Match: KAA0063096.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-42
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MS PIEQQSP  PG+QQ Y GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSFPIEQQSP--PGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRI+PPPPR + S A  ++    TMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120

Query: 121 PSA 124
           PSA
Sbjct: 121 PSA 121

[Close]

BLAST of MS018920 vs. NCBI nr
Match: XP_038885752.1 (uncharacterized protein LOC120076044 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-42
Identity = 103/126 (81.75%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MSLPIEQQSPPA  MQQ YGGH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSPPAAEMQQNYGGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPA-TMAVQTQQETK--QEEPA 120
           GHFDLESWAETKCSSCIDGRISPPPPR +  AA  A +LPA TMA + QQETK  QEEPA
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRVDGCAA--AASLPAGTMAARPQQETKQEQEEPA 120

Query: 121 SQNPSA 124
           SQNP A
Sbjct: 121 SQNPPA 124

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BLAST of MS018920 vs. ExPASy TrEMBL
Match: A0A6J1CRZ5 (uncharacterized protein LOC111014030 OS=Momordica charantia OX=3673 GN=LOC111014030 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY
Sbjct: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120

Query: 121 PSATNA 127
           PSATNA
Sbjct: 121 PSATNA 126

[Close]

BLAST of MS018920 vs. ExPASy TrEMBL
Match: A0A0A0LP67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360640 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44
Identity = 102/124 (82.26%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MSLPIEQQSP  PGMQQ Y GH  +GSVGPVIGVL+VIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPA-TMAVQTQQETKQEEPASQ 120
           GHFDLESWAETKCSSCIDGRI+PPPPR + S    A++LPA TMAV TQQETKQEEPASQ
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQETKQEEPASQ 120

Query: 121 NPSA 124
           NPSA
Sbjct: 121 NPSA 122

[Close]

BLAST of MS018920 vs. ExPASy TrEMBL
Match: A0A5A7V9H6 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43357G00010 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.0e-42
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60
           MS PIEQQSP  PG+QQ Y GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSFPIEQQSP--PGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRI+PPPPR + S A  ++    TMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120

Query: 121 PSA 124
           PSA
Sbjct: 121 PSA 121

[Close]

BLAST of MS018920 vs. ExPASy TrEMBL
Match: A0A6J1KK79 (uncharacterized protein LOC111496028 OS=Cucurbita maxima OX=3661 GN=LOC111496028 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 100/123 (81.30%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MSLPIEQQSPPAPGMQQPYGGHLSN-GSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMG 60
           MSLPI+QQSPPAPGMQQPYGGH S+ GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMG
Sbjct: 1   MSLPIDQQSPPAPGMQQPYGGHASSGGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 60

Query: 61  YGHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALP-ATMAVQTQQETKQEEPAS 120
           YGHFDLE WAE KCSSCIDGRIS P PR NVS  T A +LP ATM+VQTQ    Q+EPAS
Sbjct: 61  YGHFDLERWAEVKCSSCIDGRISSPSPRVNVS--TAAASLPAATMSVQTQ----QDEPAS 117

Query: 121 QNP 122
           QNP
Sbjct: 121 QNP 117

[Close]

BLAST of MS018920 vs. ExPASy TrEMBL
Match: A0A6P4ABB2 (uncharacterized protein LOC107420905 OS=Ziziphus jujuba OX=326968 GN=LOC107420905 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.8e-29
Identity = 74/124 (59.68%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MSLPI-EQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMG 60
           M++P+ EQ  PPA  +QQP+  H ++GS+GP+I VLVVIIV  ++AV+VGRLCSGK++MG
Sbjct: 1   MAMPLYEQPPPPAFTVQQPHSTHSAHGSIGPLIAVLVVIIVLGILAVMVGRLCSGKSMMG 60

Query: 61  YGHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQ 120
           YG FDLESWAE KCSSCIDG+I+ P PR N+S   +  ++P TM V+T QE  QEE +S 
Sbjct: 61  YGQFDLESWAERKCSSCIDGKINSPLPRTNIS---SCNSVPITMPVETHQEIDQEELSSP 120

Query: 121 NPSA 124
           NPSA
Sbjct: 121 NPSA 121

[Close]

BLAST of MS018920 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 0


Query: 2   SLPIEQQSPPAPGMQQPYGGHLS--NGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMG 61
           S+P+  Q PPA  + Q      S  N ++GP I V +V+ V  V+A V+GRLCSGKTI+G
Sbjct: 3   SMPLYWQPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILG 62

Query: 62  YGHFDLESWAETKCSSCIDGRISP--------PPPRANVSAATTATALPATMAVQ----- 121
           YG +D+E WAE++C SCIDG I P        PPPR  +   ++  +  +   V      
Sbjct: 63  YGDYDMERWAESRCGSCIDGHIHPHRPSPSPTPPPRQPLHHTSSGVSAESEGHVADLDHE 122

Query: 122 ---TQQETKQEEPASQNPSATNA 127
               +Q++   EP  Q PS+ ++
Sbjct: 123 TDGEKQDSLDHEPPQQTPSSAHS 145

[Close]

BLAST of MS018920 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 13  PGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGYGHFDLESWAETK 72
           P   QP   +  + S+  ++ VL VI + +V+A V  RLC G+ +   G  D+E W E K
Sbjct: 24  PSQDQP-SHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERK 83

Query: 73  CSSCIDGRI-------SPPPP 87
           C SCID  I       SPPPP
Sbjct: 84  CRSCIDAGIPAVSAAPSPPPP 103

The following BLAST results are available for this feature:

BLAST of MS018920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144319.1	3.9e-60	100.00	uncharacterized protein LOC111014030 [Momordica charantia]	[more]
XP_031737057.1	5.1e-44	82.26	uncharacterized protein LOC116402140 [Cucumis sativus] >KGN62547.1 hypothetical ...	[more]
KAG6598392.1	1.9e-43	82.26	hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063096.1	2.2e-42	79.67	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
XP_038885752.1	4.8e-42	81.75	uncharacterized protein LOC120076044 [Benincasa hispida]	[more]

BLAST of MS018920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRZ5	1.9e-60	100.00	uncharacterized protein LOC111014030 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LP67	2.5e-44	82.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360640 PE=4 SV=1	[more]
A0A5A7V9H6	1.0e-42	79.67	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1KK79	3.4e-41	81.30	uncharacterized protein LOC111496028 OS=Cucurbita maxima OX=3661 GN=LOC111496028...	[more]
A0A6P4ABB2	3.8e-29	59.68	uncharacterized protein LOC107420905 OS=Ziziphus jujuba OX=326968 GN=LOC10742090...	[more]

BLAST of MS018920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	2.0e-17	37.76	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	1.8e-07	39.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..123
None	No IPR available	PANTHER	PTHR33429:SF24	EXPRESSED PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018920.1	MS018920.1	mRNA