MS018850 (gene) Bitter gourd (TR) v1

Overview


Name	MS018850
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF4283 domain-containing protein
Location	scaffold14: 334758 .. 334964 (-)
RNA-Seq Expression	MS018850
Synteny	MS018850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTTGTTCCATCTTATGGTGGATGGATAAAGGTTCGACGTATTCCCATAGATAGGTGGAACATGGATACCTTTAAAATCATGGGGGAGGCTTGTGAGGGTCTCGAGGCAGTTGCTAATAAAACCAAAAATCTCATGGACCTCATGGAGATCAGTATTAAGGTGGAAACTAACTCCACCAGCTTTATTCCAGCTTTCATCGATCTT

mRNA sequence

CAGGTTGTTCCATCTTATGGTGGATGGATAAAGGTTCGACGTATTCCCATAGATAGGTGGAACATGGATACCTTTAAAATCATGGGGGAGGCTTGTGAGGGTCTCGAGGCAGTTGCTAATAAAACCAAAAATCTCATGGACCTCATGGAGATCAGTATTAAGGTGGAAACTAACTCCACCAGCTTTATTCCAGCTTTCATCGATCTT

Coding sequence (CDS)

CAGGTTGTTCCATCTTATGGTGGATGGATAAAGGTTCGACGTATTCCCATAGATAGGTGGAACATGGATACCTTTAAAATCATGGGGGAGGCTTGTGAGGGTCTCGAGGCAGTTGCTAATAAAACCAAAAATCTCATGGACCTCATGGAGATCAGTATTAAGGTGGAAACTAACTCCACCAGCTTTATTCCAGCTTTCATCGATCTT

Protein sequence

QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNSTSFIPAFIDL

Homology

[Close]

BLAST of MS018850 vs. NCBI nr
Match: KAA0040039.1 (hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L D+ E SIK++ N T
Sbjct: 280 KVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYT 339

Query: 61  SFIPAFIDL 70
            FIPA+I L
Sbjct: 340 GFIPAYIKL 348

[Close]

BLAST of MS018850 vs. NCBI nr
Match: KAA0044333.1 (hypothetical protein E6C27_scaffold46G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L DL+E SI+V+ N +
Sbjct: 216 KVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFMEVAKETRELTDLIEASIRVKDNYS 275

Query: 61  SFIPAFIDL 70
            FIPAFI L
Sbjct: 276 GFIPAFIKL 284

[Close]

BLAST of MS018850 vs. NCBI nr
Match: KAA0050054.1 (hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L D++E SI+++ N +
Sbjct: 318 KVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYS 377

Query: 61  SFIPAFIDL 70
            FIPAFI L
Sbjct: 378 GFIPAFIKL 386

[Close]

BLAST of MS018850 vs. NCBI nr
Match: TYK10355.1 (hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L D++E SI+++ N +
Sbjct: 370 KVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYS 429

Query: 61  SFIPAFIDL 70
            FIPAFI L
Sbjct: 430 GFIPAFIKL 438

[Close]

BLAST of MS018850 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 3   VPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNSTSF 62
           VPSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L DL+E SI+V+ N + F
Sbjct: 211 VPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGF 270

Query: 63  IPAFIDL 70
           IPAFI L
Sbjct: 271 IPAFIKL 277

[Close]

BLAST of MS018850 vs. ExPASy TrEMBL
Match: A0A5A7TFK7 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00060 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L D+ E SIK++ N T
Sbjct: 280 KVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFVEVAKETRELTDIFEASIKIKDNYT 339

Query: 61  SFIPAFIDL 70
            FIPA+I L
Sbjct: 340 GFIPAYIKL 348

[Close]

BLAST of MS018850 vs. ExPASy TrEMBL
Match: A0A5A7TLE2 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00570 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L DL+E SI+V+ N +
Sbjct: 216 KVIPSYGGWIKVRGVPLHAWNLESFIQIGDACGGFMEVAKETRELTDLIEASIRVKDNYS 275

Query: 61  SFIPAFIDL 70
            FIPAFI L
Sbjct: 276 GFIPAFIKL 284

[Close]

BLAST of MS018850 vs. ExPASy TrEMBL
Match: A0A5A7U495 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00340 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.5e-14
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L D++E SI+++ N +
Sbjct: 318 KVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYS 377

Query: 61  SFIPAFIDL 70
            FIPAFI L
Sbjct: 378 GFIPAFIKL 386

[Close]

BLAST of MS018850 vs. ExPASy TrEMBL
Match: A0A5D3CFS8 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00330 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.5e-14
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   QVVPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNST 60
           +V+PSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L D++E SI+++ N +
Sbjct: 370 KVIPSYGGWIKVRGVPLHAWNLESFTQIGDACGGFIEVAKETRELTDIIEASIRIKDNYS 429

Query: 61  SFIPAFIDL 70
            FIPAFI L
Sbjct: 430 GFIPAFIKL 438

[Close]

BLAST of MS018850 vs. ExPASy TrEMBL
Match: E5GB30 (DUF4283 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 3   VPSYGGWIKVRRIPIDRWNMDTFKIMGEACEGLEAVANKTKNLMDLMEISIKVETNSTSF 62
           VPSYGGWIKVR +P+  WN+++F  +G+AC G   VA +T+ L DL+E SI+V+ N + F
Sbjct: 211 VPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGF 270

Query: 63  IPAFIDL 70
           IPAFI L
Sbjct: 271 IPAFIKL 277

The following BLAST results are available for this feature:

BLAST of MS018850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040039.1	1.1e-13	52.17	hypothetical protein E6C27_scaffold366G00060 [Cucumis melo var. makuwa]	[more]
KAA0044333.1	1.1e-13	53.62	hypothetical protein E6C27_scaffold46G00570 [Cucumis melo var. makuwa]	[more]
KAA0050054.1	2.0e-13	50.72	hypothetical protein E6C27_scaffold675G00340 [Cucumis melo var. makuwa]	[more]
TYK10355.1	2.0e-13	50.72	hypothetical protein E5676_scaffold367G00330 [Cucumis melo var. makuwa]	[more]
ADN33672.1	2.6e-13	55.22	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MS018850 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFK7	5.6e-14	52.17	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TLE2	5.6e-14	53.62	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U495	9.5e-14	50.72	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CFS8	9.5e-14	50.72	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
E5GB30	1.2e-13	55.22	DUF4283 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]

BLAST of MS018850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018850.1	MS018850.1	mRNA