MS018845 (gene) Bitter gourd (TR) v1

Overview


Name	MS018845
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	golgin candidate 3-like
Location	scaffold14: 291609 .. 291698 (+)
RNA-Seq Expression	MS018845
Synteny	MS018845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCAAAGCTCCGCCGTGCCCTTGACCAGAGTATGACAAGGCTTAATAGGATGTCGGTGGATTCAGATTATCTTGTTGACAAGTATCTA

mRNA sequence

AATTCAAAGCTCCGCCGTGCCCTTGACCAGAGTATGACAAGGCTTAATAGGATGTCGGTGGATTCAGATTATCTTGTTGACAAGTATCTA

Coding sequence (CDS)

AATTCAAAGCTCCGCCGTGCCCTTGACCAGAGTATGACAAGGCTTAATAGGATGTCGGTGGATTCAGATTATCTTGTTGACAAGTATCTA

Protein sequence

NSKLRRALDQSMTRLNRMSVDSDYLVDKYL

Homology

[Close]

BLAST of MS018845 vs. NCBI nr
Match: XP_022147160.1 (golgin candidate 3 isoform X1 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSDYLVD+
Sbjct: 581 NSKLRRALDQSMTRLNRMSVDSDYLVDR 608

[Close]

BLAST of MS018845 vs. NCBI nr
Match: XP_022147161.1 (golgin candidate 3 isoform X2 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 9.4e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSDYLVD+
Sbjct: 577 NSKLRRALDQSMTRLNRMSVDSDYLVDR 604

[Close]

BLAST of MS018845 vs. NCBI nr
Match: XP_022959209.1 (golgin candidate 3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSD+LVD+
Sbjct: 571 NSKLRRALDQSMTRLNRMSVDSDFLVDR 598

[Close]

BLAST of MS018845 vs. NCBI nr
Match: XP_008458162.1 (PREDICTED: golgin candidate 4 isoform X1 [Cucumis melo] >TYK14029.1 golgin candidate 4 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSD+LVD+
Sbjct: 563 NSKLRRALDQSMTRLNRMSVDSDFLVDR 590

[Close]

BLAST of MS018845 vs. NCBI nr
Match: XP_023006511.1 (golgin candidate 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSD+LVD+
Sbjct: 572 NSKLRRALDQSMTRLNRMSVDSDFLVDR 599

[Close]

BLAST of MS018845 vs. ExPASy Swiss-Prot
Match: Q84WU4 (Golgin candidate 3 OS=Arabidopsis thaliana OX=3702 GN=GC3 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.4e-05
Identity = 21/28 (75.00%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           N+K+RR L+QSMTRLNRMS++SDYLVD+
Sbjct: 541 NAKVRRVLEQSMTRLNRMSMESDYLVDR 568

[Close]

BLAST of MS018845 vs. ExPASy Swiss-Prot
Match: Q8VYU6 (Golgin candidate 4 OS=Arabidopsis thaliana OX=3702 GN=GC4 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.4e-05
Identity = 21/28 (75.00%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           N+K+RR L+QSMTRLNRMS+DSD+LVD+
Sbjct: 546 NAKVRRVLEQSMTRLNRMSMDSDFLVDR 573

[Close]

BLAST of MS018845 vs. ExPASy TrEMBL
Match: A0A6J1D1I4 (golgin candidate 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016172 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSDYLVD+
Sbjct: 577 NSKLRRALDQSMTRLNRMSVDSDYLVDR 604

[Close]

BLAST of MS018845 vs. ExPASy TrEMBL
Match: A0A6J1CZD3 (golgin candidate 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016172 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.6e-05
Identity = 27/28 (96.43%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSDYLVD+
Sbjct: 581 NSKLRRALDQSMTRLNRMSVDSDYLVDR 608

[Close]

BLAST of MS018845 vs. ExPASy TrEMBL
Match: A0A6J1KJF2 (golgin candidate 3-like OS=Cucurbita maxima OX=3661 GN=LOC111494544 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSD+LVD+
Sbjct: 570 NSKLRRALDQSMTRLNRMSVDSDFLVDR 597

[Close]

BLAST of MS018845 vs. ExPASy TrEMBL
Match: A0A6J1KW22 (golgin candidate 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499218 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSD+LVD+
Sbjct: 571 NSKLRRALDQSMTRLNRMSVDSDFLVDR 598

[Close]

BLAST of MS018845 vs. ExPASy TrEMBL
Match: A0A6J1KXY9 (golgin candidate 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499218 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           NSKLRRALDQSMTRLNRMSVDSD+LVD+
Sbjct: 572 NSKLRRALDQSMTRLNRMSVDSDFLVDR 599

[Close]

BLAST of MS018845 vs. TAIR 10
Match: AT2G46180.1 (golgin candidate 4 )

HSP 1 Score: 47.4 bits (111), Expect = 2.4e-06
Identity = 21/28 (75.00%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           N+K+RR L+QSMTRLNRMS+DSD+LVD+
Sbjct: 546 NAKVRRVLEQSMTRLNRMSMDSDFLVDR 573

[Close]

BLAST of MS018845 vs. TAIR 10
Match: AT3G61570.1 (GRIP-related ARF-binding domain-containing protein 1 )

HSP 1 Score: 47.4 bits (111), Expect = 2.4e-06
Identity = 21/28 (75.00%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1   NSKLRRALDQSMTRLNRMSVDSDYLVDK 29
           N+K+RR L+QSMTRLNRMS++SDYLVD+
Sbjct: 541 NAKVRRVLEQSMTRLNRMSMESDYLVDR 568

The following BLAST results are available for this feature:

BLAST of MS018845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147160.1	9.4e-05	96.43	golgin candidate 3 isoform X1 [Momordica charantia]	[more]
XP_022147161.1	9.4e-05	96.43	golgin candidate 3 isoform X2 [Momordica charantia]	[more]
XP_022959209.1	2.7e-04	92.86	golgin candidate 3-like isoform X2 [Cucurbita moschata]	[more]
XP_008458162.1	2.7e-04	92.86	PREDICTED: golgin candidate 4 isoform X1 [Cucumis melo] >TYK14029.1 golgin candi...	[more]
XP_023006511.1	2.7e-04	92.86	golgin candidate 4-like isoform X1 [Cucurbita maxima]	[more]

BLAST of MS018845 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WU4	3.4e-05	75.00	Golgin candidate 3 OS=Arabidopsis thaliana OX=3702 GN=GC3 PE=1 SV=1	[more]
Q8VYU6	3.4e-05	75.00	Golgin candidate 4 OS=Arabidopsis thaliana OX=3702 GN=GC4 PE=2 SV=1	[more]

BLAST of MS018845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1I4	4.6e-05	96.43	golgin candidate 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016172 PE=...	[more]
A0A6J1CZD3	4.6e-05	96.43	golgin candidate 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016172 PE=...	[more]
A0A6J1KJF2	1.3e-04	92.86	golgin candidate 3-like OS=Cucurbita maxima OX=3661 GN=LOC111494544 PE=4 SV=1	[more]
A0A6J1KW22	1.3e-04	92.86	golgin candidate 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499218 P...	[more]
A0A6J1KXY9	1.3e-04	92.86	golgin candidate 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499218 P...	[more]

BLAST of MS018845 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46180.1	2.4e-06	75.00	golgin candidate 4	[more]
AT3G61570.1	2.4e-06	75.00	GRIP-related ARF-binding domain-containing protein 1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018845.1	MS018845.1	mRNA