MS018839 (gene) Bitter gourd (TR) v1

Overview


Name	MS018839
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor MYB52-like
Location	scaffold14: 241984 .. 242677 (+)
RNA-Seq Expression	MS018839
Synteny	MS018839

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAGTAGAGGGCACTGGAGGCCTGCAGAAGACGAGAAGCTCCGAGAGTTGGTGGAGCGACACGGAGCCCACAACTGGAACGCCATAGCCCAAAAGGTTGAAGGAAGATCGGGGAAGAGCTGCCGGCTGAGGTGGTTCAACCAGCTGGATCCGCGCATCAACAGAACCCCTTTCACACAGGACGAGGAGCGCAGGCTGCTGGCCTCCCACCGGATCCACGGCAACAGATGGGCCATTATCGCCAGGCACTTCCCCGGCCGCACCGACAACGCCCTCAAGAACCACTGGCACGTCATCATGGCCAGATCCAAAAGAAAATCCAAATCAACCCAAAATCACCATCGCCTTTTTAATTTTCCAAATATTTATTACTCCTCCCCTAACCCCACTTCTTCTATTCCCAATCCCACTCCAGGTATCCTATCCTACTTTCCTGCATATGCCTAATTTAACTAAGACATGTACTATATATGATTAATTTTGGGTACGTTGGCGCGGTGCAGATACATCAAATGATCACGCAGTAGTAGAGTTCTACGACTTTCTCCACCTAAACGCAGACTCCATTACTGCAACCAGAAGTGAAGTGATAGACAACTCACGAAAAGACGATGAAGAGGTTAATCAACAAGCCCAAGCCGATGATGCCCTTCCCCTTCCATTCATTGATTTCTTCTCTGCCCAAACCTCC

mRNA sequence

ATGTGCAGTAGAGGGCACTGGAGGCCTGCAGAAGACGAGAAGCTCCGAGAGTTGGTGGAGCGACACGGAGCCCACAACTGGAACGCCATAGCCCAAAAGGTTGAAGGAAGATCGGGGAAGAGCTGCCGGCTGAGGTGGTTCAACCAGCTGGATCCGCGCATCAACAGAACCCCTTTCACACAGGACGAGGAGCGCAGGCTGCTGGCCTCCCACCGGATCCACGGCAACAGATGGGCCATTATCGCCAGGCACTTCCCCGGCCGCACCGACAACGCCCTCAAGAACCACTGGCACGTCATCATGGCCAGATCCAAAAGAAAATCCAAATCAACCCAAAATCACCATCGCCTTTTTAATTTTCCAAATATTTATTACTCCTCCCCTAACCCCACTTCTTCTATTCCCAATCCCACTCCAGATACATCAAATGATCACGCAGTAGTAGAGTTCTACGACTTTCTCCACCTAAACGCAGACTCCATTACTGCAACCAGAAGTGAAGTGATAGACAACTCACGAAAAGACGATGAAGAGGTTAATCAACAAGCCCAAGCCGATGATGCCCTTCCCCTTCCATTCATTGATTTCTTCTCTGCCCAAACCTCC

Coding sequence (CDS)

ATGTGCAGTAGAGGGCACTGGAGGCCTGCAGAAGACGAGAAGCTCCGAGAGTTGGTGGAGCGACACGGAGCCCACAACTGGAACGCCATAGCCCAAAAGGTTGAAGGAAGATCGGGGAAGAGCTGCCGGCTGAGGTGGTTCAACCAGCTGGATCCGCGCATCAACAGAACCCCTTTCACACAGGACGAGGAGCGCAGGCTGCTGGCCTCCCACCGGATCCACGGCAACAGATGGGCCATTATCGCCAGGCACTTCCCCGGCCGCACCGACAACGCCCTCAAGAACCACTGGCACGTCATCATGGCCAGATCCAAAAGAAAATCCAAATCAACCCAAAATCACCATCGCCTTTTTAATTTTCCAAATATTTATTACTCCTCCCCTAACCCCACTTCTTCTATTCCCAATCCCACTCCAGATACATCAAATGATCACGCAGTAGTAGAGTTCTACGACTTTCTCCACCTAAACGCAGACTCCATTACTGCAACCAGAAGTGAAGTGATAGACAACTCACGAAAAGACGATGAAGAGGTTAATCAACAAGCCCAAGCCGATGATGCCCTTCCCCTTCCATTCATTGATTTCTTCTCTGCCCAAACCTCC

Protein sequence

MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNFPNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNADSITATRSEVIDNSRKDDEEVNQQAQADDALPLPFIDFFSAQTS

Homology

[Close]

BLAST of MS018839 vs. NCBI nr
Match: XP_022137548.1 (transcription factor MYB52-like [Momordica charantia])

HSP 1 Score: 419.1 bits (1076), Expect = 2.2e-113
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 35  MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 94

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF 120
           QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF
Sbjct: 95  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF 154

Query: 121 PNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNADSITATRSEVIDNSRKDDEEVN 180
           PNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNAD ITATRSEVIDNSRKDDEEVN
Sbjct: 155 PNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNADYITATRSEVIDNSRKDDEEVN 214

Query: 181 QQAQADDALPLPFIDFFSAQTS 203
           QQAQADDALPLPFIDFFSAQTS
Sbjct: 215 QQAQADDALPLPFIDFFSAQTS 236

[Close]

BLAST of MS018839 vs. NCBI nr
Match: XP_023520216.1 (transcription factor MYB52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 9.6e-69
Identity = 158/233 (67.81%), Postives = 173/233 (74.25%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVER+G HNWNAIAQK+ GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMAR-----SKRKSK------ 120
           ++EE RL+ASHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR     SK K+K      
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 ----STQNHHRLFNF------PNIYYS-------SPNPTSS-IPNPTPDTSNDHAVVEFY 180
               S+QNH    +F      PN   S        PNP SS IP PT D S     VEFY
Sbjct: 121 TLTPSSQNHLLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPT-DRS-----VEFY 180

Query: 181 DFLHLNADSITATRSEVIDNSRKDD-EEVNQQAQADDALPL-PFIDFFSAQTS 203
           DFLHLNA+SI A  SEVIDNSRK+D EEVNQ+A A  A PL PFIDFFSAQTS
Sbjct: 181 DFLHLNAESINA--SEVIDNSRKEDYEEVNQEATATAARPLFPFIDFFSAQTS 225

[Close]

BLAST of MS018839 vs. NCBI nr
Match: XP_023001003.1 (transcription factor MYB52-like [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-68
Identity = 157/238 (65.97%), Postives = 175/238 (73.53%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVER+G HNWNAIAQK++GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMAR-----SKRKSK------ 120
           ++EE RL+ASHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR     SK K+K      
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAK 120

Query: 121 ----------STQNHHRLFNF------PN------IYYSSPNPTSS-IPNPTPDTSNDHA 180
                     S+Q+H  L +F      PN       +   PNP SS IP PT D S    
Sbjct: 121 AITKTQTLSPSSQSHLLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPT-DRS---- 180

Query: 181 VVEFYDFLHLNADSITATRSEVIDNSRKDD-EEVNQQAQADDALPL-PFIDFFSAQTS 203
            VEFYDFLHLNA+SI A  SEVIDNSRK+D EEVNQ+A A  A PL PFIDFFSAQTS
Sbjct: 181 -VEFYDFLHLNAESINA--SEVIDNSRKEDYEEVNQEATATAARPLFPFIDFFSAQTS 230

[Close]

BLAST of MS018839 vs. NCBI nr
Match: XP_022924085.1 (transcription factor MYB52-like [Cucurbita moschata] >KAG6584475.1 Transcription factor MYB52, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020062.1 Transcription factor MYB52 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.5 bits (685), Expect = 4.8e-68
Identity = 157/235 (66.81%), Postives = 172/235 (73.19%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVER+G HNWNAIAQK+ GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMAR-----SKRKSK------ 120
           ++EE RL+ SHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR     SK K+K      
Sbjct: 61  EEEEERLMTSHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 ------STQNHHRLFNF------PNIYYS-------SPNPTSS-IPNPTPDTSNDHAVVE 180
                 S+QNH    +F      PN   S        PNP SS IP PT D S     VE
Sbjct: 121 TKTLTPSSQNHLLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPT-DRS-----VE 180

Query: 181 FYDFLHLNADSITATRSEVIDNSRKDD-EEVNQQAQADDALPL-PFIDFFSAQTS 203
           FYDFLHLNA+SI A  SEVIDNSRK+D EEVNQ+A A  A PL PFIDFFSAQTS
Sbjct: 181 FYDFLHLNAESINA--SEVIDNSRKEDYEEVNQEATATAARPLFPFIDFFSAQTS 227

[Close]

BLAST of MS018839 vs. NCBI nr
Match: XP_038895550.1 (transcription factor MYB54-like [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 7.1e-64
Identity = 142/227 (62.56%), Postives = 162/227 (71.37%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVER+G HNWNAIAQK++GRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQ-------- 120
           ++EE RL+ASHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR  R    TQ        
Sbjct: 61  EEEEERLMASHRLHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTQTPSNSL 120

Query: 121 ------NHHRLFNFPNIYYSS-----PNPTSS---IPN-PTPDTSNDHAVVEFYDFLHLN 180
                 +HH   N   +  SS       PTS+   IP  P+ D +  +A V +YDFL++N
Sbjct: 121 HHHNNNHHHHHHNHNRLLLSSFLQLHTCPTSNSLFIPKPPSVDAARTNASVHYYDFLNVN 180

Query: 181 ADSITATRSEVIDNSRKDD-EEVNQQAQADDALPLPFIDFFSA-QTS 203
            +SI    SEVIDNSRK+D EEVN     +    LPFIDFFSA QTS
Sbjct: 181 TESING--SEVIDNSRKEDYEEVN---NGEHQSVLPFIDFFSASQTS 222

[Close]

BLAST of MS018839 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-55
Identity = 127/247 (51.42%), Postives = 147/247 (59.51%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVE+ G HNWNAIAQK+ GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKS------------ 120
           ++EE RLLASHRIHGNRW++IAR FPGRTDNA+KNHWHVIMAR  R+             
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDG 121

Query: 121 -----------KSTQNHHRL-----FNFPNIY----------------YSSPNPTSSIPN 180
                      K      RL      NFP  +                    N T+ I  
Sbjct: 122 TVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTPIQE 181

Query: 181 PTPDTSNDHAVVEFYDFLHLNADSITATRSEVIDNSRKDDEE-VNQQAQADDALPLPFID 203
              D +     +EFY+FL +N DS      E+IDNSRKD+EE V+Q  +  +   +PF D
Sbjct: 182 GAIDQTK--RPMEFYNFLQVNTDS---KIHELIDNSRKDEEEDVDQNNRIPNENCVPFFD 241

[Close]

BLAST of MS018839 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.2e-51
Identity = 119/248 (47.98%), Postives = 147/248 (59.27%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKL++LVE++G HNWNAIA K+ GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRK------------- 120
           ++EE RLLA+HRIHGNRW+IIAR FPGRTDNA+KNHWHVIMAR  R+             
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query: 121 -----------SKSTQNHH-----RLFNFPNIYYSSPNPTSSIPNP-------TPDTSND 180
                      S    NH+     R   FP  + + P   S I +        T   + +
Sbjct: 123 SSLMASEQIMMSSGGYNHNYSSDDRKKIFPADFINFPYKFSHINHLHFLKEFFTGKIALN 182

Query: 181 HAV------VEFYDFLHLNADSITATRSEVID----NSRKDDEEVNQQAQADDALPLPFI 203
           H        +EFY+FL +N DS    +SE+ID     S++ D +   ++       +PF 
Sbjct: 183 HKANQSKKPMEFYNFLQVNTDS---NKSEIIDQDSGQSKRSDSDTKHESH------VPFF 241

[Close]

BLAST of MS018839 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 7.7e-45
Identity = 82/137 (59.85%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           +C+RGHWRPAED KL++LV ++G  NWN IA+K++GRSGKSCRLRWFNQLDPRINR  FT
Sbjct: 46  LCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFT 105

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF 120
           ++EE RL+A+HR +GN+WA+IAR FPGRTDNA+KNHWHV+MAR  R+        +    
Sbjct: 106 EEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRRK---- 165

Query: 121 PNIYYSSPNPTSSIPNP 138
           P+   +SP P  + P P
Sbjct: 166 PSSSSASPAPAPAPPPP 178

[Close]

BLAST of MS018839 vs. ExPASy Swiss-Prot
Match: Q9LQX5 (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-43
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQDE 63
           RGHWRPAED KL+ELV  +G  NWN IA+K++GRSGKSCRLRWFNQLDPRINR  FT++E
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  ERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLF----- 123
           E RL+ +HR++GN+WA+IAR FPGRTDN++KNHWHV+MAR  R+  S     +L      
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 --NFPNIYYSSPNP 131
             +  N ++ +PNP
Sbjct: 218 KPHLTNNHHPNPNP 231

[Close]

BLAST of MS018839 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.5e-43
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 3   SRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQD 62
           SRGHWRPAED KL+ELV  +G  NWN IA+K++GRSGKSCRLRWFNQLDPRINR  FT++
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHR 117
           EE RL+ +HR++GN+WA+IAR FPGRTDN++KNHWHVIMAR  R+  S+    +
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRK 219

[Close]

BLAST of MS018839 vs. ExPASy TrEMBL
Match: A0A6J1CAM4 (transcription factor MYB52-like OS=Momordica charantia OX=3673 GN=LOC111008971 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.1e-113
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 35  MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 94

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF 120
           QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF
Sbjct: 95  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNF 154

Query: 121 PNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNADSITATRSEVIDNSRKDDEEVN 180
           PNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNAD ITATRSEVIDNSRKDDEEVN
Sbjct: 155 PNIYYSSPNPTSSIPNPTPDTSNDHAVVEFYDFLHLNADYITATRSEVIDNSRKDDEEVN 214

Query: 181 QQAQADDALPLPFIDFFSAQTS 203
           QQAQADDALPLPFIDFFSAQTS
Sbjct: 215 QQAQADDALPLPFIDFFSAQTS 236

[Close]

BLAST of MS018839 vs. ExPASy TrEMBL
Match: A0A6J1KP91 (transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111495269 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.0e-68
Identity = 157/238 (65.97%), Postives = 175/238 (73.53%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVER+G HNWNAIAQK++GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMAR-----SKRKSK------ 120
           ++EE RL+ASHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR     SK K+K      
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKAK 120

Query: 121 ----------STQNHHRLFNF------PN------IYYSSPNPTSS-IPNPTPDTSNDHA 180
                     S+Q+H  L +F      PN       +   PNP SS IP PT D S    
Sbjct: 121 AITKTQTLSPSSQSHLLLSSFLQTSCPPNNASLFLNHSLYPNPISSFIPKPT-DRS---- 180

Query: 181 VVEFYDFLHLNADSITATRSEVIDNSRKDD-EEVNQQAQADDALPL-PFIDFFSAQTS 203
            VEFYDFLHLNA+SI A  SEVIDNSRK+D EEVNQ+A A  A PL PFIDFFSAQTS
Sbjct: 181 -VEFYDFLHLNAESINA--SEVIDNSRKEDYEEVNQEATATAARPLFPFIDFFSAQTS 230

[Close]

BLAST of MS018839 vs. ExPASy TrEMBL
Match: A0A6J1EDT2 (transcription factor MYB52-like OS=Cucurbita moschata OX=3662 GN=LOC111431625 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.3e-68
Identity = 157/235 (66.81%), Postives = 172/235 (73.19%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVER+G HNWNAIAQK+ GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLLGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMAR-----SKRKSK------ 120
           ++EE RL+ SHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMAR     SK K+K      
Sbjct: 61  EEEEERLMTSHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARKSRDSSKAKAKAKAKTK 120

Query: 121 ------STQNHHRLFNF------PNIYYS-------SPNPTSS-IPNPTPDTSNDHAVVE 180
                 S+QNH    +F      PN   S        PNP SS IP PT D S     VE
Sbjct: 121 TKTLTPSSQNHLLFSSFLQTSCPPNNNASLFLNHSLYPNPISSFIPKPT-DRS-----VE 180

Query: 181 FYDFLHLNADSITATRSEVIDNSRKDD-EEVNQQAQADDALPL-PFIDFFSAQTS 203
           FYDFLHLNA+SI A  SEVIDNSRK+D EEVNQ+A A  A PL PFIDFFSAQTS
Sbjct: 181 FYDFLHLNAESINA--SEVIDNSRKEDYEEVNQEATATAARPLFPFIDFFSAQTS 227

[Close]

BLAST of MS018839 vs. ExPASy TrEMBL
Match: A0A0A0LPV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.5e-62
Identity = 141/229 (61.57%), Postives = 168/229 (73.36%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVER+G HNWNAIAQK++GRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMA-RSKRKSKS-------TQ 120
           ++EE RL+ASHR+HGNRWAIIAR FPGRTDNA+KNHWHVIMA RS+ KSK+       TQ
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQ 120

Query: 121 NHHRLFNFPNIYYSS-----PNPTSS---IPNPTPDTS-------NDHAVVEFYDFLHLN 180
            H+   N   +  SS       PTS+   IP P PD +       +  +++ +YDFL +N
Sbjct: 121 THNNNNNNNRLLLSSFLQLHAYPTSNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFLQVN 180

Query: 181 A-DSITATRSEVIDN-SRKDD-EEVNQQAQAD-DALPLPFIDFFSAQTS 203
           + DS+    SEVIDN SRK+D EEVN     +  A+ LPFIDFFSA ++
Sbjct: 181 STDSMNG--SEVIDNSSRKEDYEEVNNNNNGEQQAVLLPFIDFFSASSN 227

[Close]

BLAST of MS018839 vs. ExPASy TrEMBL
Match: A0A0L9VHU2 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g043500 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 9.4e-62
Identity = 129/230 (56.09%), Postives = 155/230 (67.39%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVER+G HNWNAIA+K+ GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQN------- 120
           ++EE RLLASHRIHGNRWA+IARHFPGRTDNA+KNHWHV+MAR +R+     N       
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKQPLFP 120

Query: 121 -----------------------HHRLFNFPN-IYYSSPNPTSSIPNPTPDTSNDHAVVE 180
                                   H  F+FPN  ++  P   S++P   P+ S     VE
Sbjct: 121 PNLDTDFETNSIPSFVDKYYEKFTHTPFHFPNTFHFQHPTSASTLP---PEKSQS---VE 180

Query: 181 FYDFLHLNADSITATRSEVIDNSRKDDEEVNQQAQADDALPLPFIDFFSA 200
           FYDFL +N DS    +SEV D +R+D+EEV+Q       + +PFIDF S+
Sbjct: 181 FYDFLQVNTDS---NKSEVTDIARRDEEEVSQDGVELKNIGVPFIDFLSS 221

[Close]

BLAST of MS018839 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 217.6 bits (553), Expect = 9.0e-57
Identity = 127/247 (51.42%), Postives = 147/247 (59.51%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVE+ G HNWNAIAQK+ GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKS------------ 120
           ++EE RLLASHRIHGNRW++IAR FPGRTDNA+KNHWHVIMAR  R+             
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDG 121

Query: 121 -----------KSTQNHHRL-----FNFPNIY----------------YSSPNPTSSIPN 180
                      K      RL      NFP  +                    N T+ I  
Sbjct: 122 TVAATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTPIQE 181

Query: 181 PTPDTSNDHAVVEFYDFLHLNADSITATRSEVIDNSRKDDEE-VNQQAQADDALPLPFID 203
              D +     +EFY+FL +N DS      E+IDNSRKD+EE V+Q  +  +   +PF D
Sbjct: 182 GAIDQTK--RPMEFYNFLQVNTDS---KIHELIDNSRKDEEEDVDQNNRIPNENCVPFFD 241

[Close]

BLAST of MS018839 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-52
Identity = 119/248 (47.98%), Postives = 147/248 (59.27%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKL++LVE++G HNWNAIA K+ GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  QDEERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRK------------- 120
           ++EE RLLA+HRIHGNRW+IIAR FPGRTDNA+KNHWHVIMAR  R+             
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSS 122

Query: 121 -----------SKSTQNHH-----RLFNFPNIYYSSPNPTSSIPNP-------TPDTSND 180
                      S    NH+     R   FP  + + P   S I +        T   + +
Sbjct: 123 SSLMASEQIMMSSGGYNHNYSSDDRKKIFPADFINFPYKFSHINHLHFLKEFFTGKIALN 182

Query: 181 HAV------VEFYDFLHLNADSITATRSEVID----NSRKDDEEVNQQAQADDALPLPFI 203
           H        +EFY+FL +N DS    +SE+ID     S++ D +   ++       +PF 
Sbjct: 183 HKANQSKKPMEFYNFLQVNTDS---NKSEIIDQDSGQSKRSDSDTKHESH------VPFF 241

[Close]

BLAST of MS018839 vs. TAIR 10
Match: AT1G26780.1 (myb domain protein 117 )

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-44
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQDE 63
           RGHWRPAED KL+ELV  +G  NWN IA+K++GRSGKSCRLRWFNQLDPRINR  FT++E
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  ERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLF----- 123
           E RL+ +HR++GN+WA+IAR FPGRTDN++KNHWHV+MAR  R+  S     +L      
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 --NFPNIYYSSPNP 131
             +  N ++ +PNP
Sbjct: 218 KPHLTNNHHPNPNP 231

[Close]

BLAST of MS018839 vs. TAIR 10
Match: AT1G26780.2 (myb domain protein 117 )

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-44
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQDE 63
           RGHWRPAED KL+ELV  +G  NWN IA+K++GRSGKSCRLRWFNQLDPRINR  FT++E
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  ERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLF----- 123
           E RL+ +HR++GN+WA+IAR FPGRTDN++KNHWHV+MAR  R+  S     +L      
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNNPL 217

Query: 124 --NFPNIYYSSPNP 131
             +  N ++ +PNP
Sbjct: 218 KPHLTNNHHPNPNP 231

[Close]

BLAST of MS018839 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 175.6 bits (444), Expect = 3.9e-44
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 3   SRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQD 62
           SRGHWRPAED KL+ELV  +G  NWN IA+K++GRSGKSCRLRWFNQLDPRINR  FT++
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHR 117
           EE RL+ +HR++GN+WA+IAR FPGRTDN++KNHWHVIMAR  R+  S+    +
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRK 219

The following BLAST results are available for this feature:

BLAST of MS018839 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137548.1	2.2e-113	99.50	transcription factor MYB52-like [Momordica charantia]	[more]
XP_023520216.1	9.6e-69	67.81	transcription factor MYB52-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001003.1	2.1e-68	65.97	transcription factor MYB52-like [Cucurbita maxima]	[more]
XP_022924085.1	4.8e-68	66.81	transcription factor MYB52-like [Cucurbita moschata] >KAG6584475.1 Transcription...	[more]
XP_038895550.1	7.1e-64	62.56	transcription factor MYB54-like [Benincasa hispida]	[more]

BLAST of MS018839 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R0C4	1.3e-55	51.42	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
Q9FX36	3.2e-51	47.98	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]
Q5NBM8	7.7e-45	59.85	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9LQX5	2.5e-43	59.70	Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1	[more]
Q9SEZ4	5.5e-43	67.54	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]

BLAST of MS018839 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAM4	1.1e-113	99.50	transcription factor MYB52-like OS=Momordica charantia OX=3673 GN=LOC111008971 P...	[more]
A0A6J1KP91	1.0e-68	65.97	transcription factor MYB52-like OS=Cucurbita maxima OX=3661 GN=LOC111495269 PE=4...	[more]
A0A6J1EDT2	2.3e-68	66.81	transcription factor MYB52-like OS=Cucurbita moschata OX=3662 GN=LOC111431625 PE...	[more]
A0A0A0LPV0	1.5e-62	61.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1	[more]
A0A0L9VHU2	9.4e-62	56.09	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g043500 PE...	[more]

BLAST of MS018839 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17950.1	9.0e-57	51.42	myb domain protein 52	[more]
AT1G73410.1	2.3e-52	47.98	myb domain protein 54	[more]
AT1G26780.1	1.8e-44	59.70	myb domain protein 117	[more]
AT1G26780.2	1.8e-44	59.70	myb domain protein 117	[more]
AT1G69560.1	3.9e-44	67.54	myb domain protein 105	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 55..103 e-value: 8.0E-15 score: 65.2 coord: 3..52 e-value: 1.5E-14 score: 64.4
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 1..50 score: 11.1377
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 51..101 score: 9.442289
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 7..48 e-value: 4.12995E-14 score: 61.8226
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 58..98 e-value: 1.45875E-11 score: 55.2742
None	No IPR available	GENE3D	1.10.10.60		coord: 57..117 e-value: 3.5E-18 score: 67.3
None	No IPR available	GENE3D	1.10.10.60		coord: 4..55 e-value: 6.0E-24 score: 85.8
None	No IPR available	PANTHER	PTHR45614:SF111	MYB-RELATED PROTEIN A-LIKE	coord: 1..142 coord: 147..200
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 1..142 coord: 147..200
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 4..49 e-value: 4.9E-16 score: 58.6 coord: 56..99 e-value: 2.8E-13 score: 49.8
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 51..105 score: 25.205038
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..50 score: 20.787092
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 4..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018839.1	MS018839.1	mRNA