MS018811 (gene) Bitter gourd (TR) v1

Overview


Name	MS018811
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold14: 78135 .. 78284 (+)
RNA-Seq Expression	MS018811
Synteny	MS018811

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTATAATGTACTACCTCACTTTTGAAGTCAAGCAAATGGGATCGTCTCCAAACTCTCCCACCAAAACACTCCAAGCTCGAGTGTTGCGTGGTCTTCCTATTGGTCATTTTGTTGTAGAACTATGTAGGCCAGAACCCTCTACTTCTAGT

mRNA sequence

GGTATAATGTACTACCTCACTTTTGAAGTCAAGCAAATGGGATCGTCTCCAAACTCTCCCACCAAAACACTCCAAGCTCGAGTGTTGCGTGGTCTTCCTATTGGTCATTTTGTTGTAGAACTATGTAGGCCAGAACCCTCTACTTCTAGT

Coding sequence (CDS)

GGTATAATGTACTACCTCACTTTTGAAGTCAAGCAAATGGGATCGTCTCCAAACTCTCCCACCAAAACACTCCAAGCTCGAGTGTTGCGTGGTCTTCCTATTGGTCATTTTGTTGTAGAACTATGTAGGCCAGAACCCTCTACTTCTAGT

Protein sequence

GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPSTSS

Homology

[Close]

BLAST of MS018811 vs. NCBI nr
Match: XP_022137526.1 (uncharacterized protein LOC111008952 [Momordica charantia] >XP_022137527.1 uncharacterized protein LOC111008952 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 8.6e-19
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPSTSS 51
           GIMYYLTFEVKQMGS PNSPTKTLQARVLRGLPIGHF VELCRPEPSTSS
Sbjct: 119 GIMYYLTFEVKQMGSPPNSPTKTLQARVLRGLPIGHFDVELCRPEPSTSS 168

[Close]

BLAST of MS018811 vs. NCBI nr
Match: XP_022137488.1 (uncharacterized protein LOC111008920 isoform X1 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPS 48
           G +++LTF+VKQ G+ P+SPT TLQARVL G+    F V+LCRPEP+
Sbjct: 135 GELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPT 181

[Close]

BLAST of MS018811 vs. NCBI nr
Match: XP_022137489.1 (uncharacterized protein LOC111008920 isoform X2 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-07
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPS 48
           G +++LTF+VKQ G+ P+SPT TLQARVL G+    F V+LCRPEP+
Sbjct: 119 GELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPT 165

[Close]

BLAST of MS018811 vs. NCBI nr
Match: KGN63981.2 (hypothetical protein Csa_013804 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEP 47
           GI+YY+TF+VK+ G++P  P  T QARVL G+ +    VELCRPEP
Sbjct: 208 GILYYITFDVKEAGAAPELPMTTFQARVLYGIRV--IEVELCRPEP 251

[Close]

BLAST of MS018811 vs. NCBI nr
Match: XP_022975633.1 (uncharacterized protein LOC111475320 [Cucurbita maxima])

HSP 1 Score: 53.9 bits (128), Expect = 4.6e-04
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFV-VELCRPEPS 48
           G MYY+TF VK +G+S   P+ T QA+V   +PI   + VELCRP+PS
Sbjct: 110 GSMYYITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPS 157

[Close]

BLAST of MS018811 vs. ExPASy TrEMBL
Match: A0A6J1C8H7 (uncharacterized protein LOC111008952 OS=Momordica charantia OX=3673 GN=LOC111008952 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPSTSS 51
           GIMYYLTFEVKQMGS PNSPTKTLQARVLRGLPIGHF VELCRPEPSTSS
Sbjct: 119 GIMYYLTFEVKQMGSPPNSPTKTLQARVLRGLPIGHFDVELCRPEPSTSS 168

[Close]

BLAST of MS018811 vs. ExPASy TrEMBL
Match: A0A6J1CAH1 (uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPS 48
           G +++LTF+VKQ G+ P+SPT TLQARVL G+    F V+LCRPEP+
Sbjct: 135 GELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPT 181

[Close]

BLAST of MS018811 vs. ExPASy TrEMBL
Match: A0A6J1C7D4 (uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEPS 48
           G +++LTF+VKQ G+ P+SPT TLQARVL G+    F V+LCRPEP+
Sbjct: 119 GELFFLTFQVKQTGAPPDSPTTTLQARVLAGISPDDFDVQLCRPEPT 165

[Close]

BLAST of MS018811 vs. ExPASy TrEMBL
Match: A0A0A0LVE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032460 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1  GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFVVELCRPEP 47
          GI+YY+TF+VK+ G++P  P  T QARVL G+ +    VELCRPEP
Sbjct: 48 GILYYITFDVKEAGAAPELPMTTFQARVLYGIRV--IEVELCRPEP 91

[Close]

BLAST of MS018811 vs. ExPASy TrEMBL
Match: A0A6J1IJT3 (uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-04
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1   GIMYYLTFEVKQMGSSPNSPTKTLQARVLRGLPIGHFV-VELCRPEPS 48
           G MYY+TF VK +G+S   P+ T QA+V   +PI   + VELCRP+PS
Sbjct: 110 GSMYYITFNVKPIGTSAEFPSITFQAKVYYAIPIKDIIEVELCRPKPS 157

The following BLAST results are available for this feature:

BLAST of MS018811 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137526.1	8.6e-19	96.00	uncharacterized protein LOC111008952 [Momordica charantia] >XP_022137527.1 uncha...	[more]
XP_022137488.1	3.4e-07	59.57	uncharacterized protein LOC111008920 isoform X1 [Momordica charantia]	[more]
XP_022137489.1	3.4e-07	59.57	uncharacterized protein LOC111008920 isoform X2 [Momordica charantia]	[more]
KGN63981.2	2.4e-05	56.52	hypothetical protein Csa_013804 [Cucumis sativus]	[more]
XP_022975633.1	4.6e-04	52.08	uncharacterized protein LOC111475320 [Cucurbita maxima]	[more]

BLAST of MS018811 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8H7	4.2e-19	96.00	uncharacterized protein LOC111008952 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1CAH1	1.6e-07	59.57	uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C7D4	1.6e-07	59.57	uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LVE8	1.2e-05	56.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032460 PE=4 SV=1	[more]
A0A6J1IJT3	2.2e-04	52.08	uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320...	[more]

BLAST of MS018811 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018811.1	MS018811.1	mRNA