MS018768 (gene) Bitter gourd (TR) v1

Overview


Name	MS018768
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AP-5 complex subunit beta-1
Location	scaffold313: 1813142 .. 1813375 (-)
RNA-Seq Expression	MS018768
Synteny	MS018768

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGATAGAGGCCCGCTACGTCTTACATATTTTTCAACCGAAGACGAAACGGGAAGTCCAATCAGTAGCCATAAGAGAAACATGGGTCACTTCCATATTTTGATATTTCTTCCACCAAGGTTTCACCTTCTTTTCCAGGTGGAAGTTTCAGATTTTTCAACTTTAGTTCGAATTCGAACCGATCACTGGCCCTGCTTGGCTTACGTTGATGATTATTTGGAGGCCCTGTTTCTT

mRNA sequence

CTTGATAGAGGCCCGCTACGTCTTACATATTTTTCAACCGAAGACGAAACGGGAAGTCCAATCAGTAGCCATAAGAGAAACATGGGTCACTTCCATATTTTGATATTTCTTCCACCAAGGTTTCACCTTCTTTTCCAGGTGGAAGTTTCAGATTTTTCAACTTTAGTTCGAATTCGAACCGATCACTGGCCCTGCTTGGCTTACGTTGATGATTATTTGGAGGCCCTGTTTCTT

Coding sequence (CDS)

CTTGATAGAGGCCCGCTACGTCTTACATATTTTTCAACCGAAGACGAAACGGGAAGTCCAATCAGTAGCCATAAGAGAAACATGGGTCACTTCCATATTTTGATATTTCTTCCACCAAGGTTTCACCTTCTTTTCCAGGTGGAAGTTTCAGATTTTTCAACTTTAGTTCGAATTCGAACCGATCACTGGCCCTGCTTGGCTTACGTTGATGATTATTTGGAGGCCCTGTTTCTT

Protein sequence

LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYLEALFL

Homology

[Close]

BLAST of MS018768 vs. NCBI nr
Match: XP_022146370.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111015598, partial [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 2.0e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
           LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT
Sbjct: 259 LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 318

Query: 61  DHWPCLAYVDDYLEALFL 79
           DHWPCLAYVDDYLEALFL
Sbjct: 319 DHWPCLAYVDDYLEALFL 336

[Close]

BLAST of MS018768 vs. NCBI nr
Match: KAA0067550.1 (AP-5 complex subunit beta-1 [Cucumis melo var. makuwa] >TYJ97204.1 AP-5 complex subunit beta-1 [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 7.8e-35
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1055 LDRGPLRLTYFSNEDEMGSLVSSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1114

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1115 DHWPCLAYVDDYLEALFL 1132

[Close]

BLAST of MS018768 vs. NCBI nr
Match: XP_008466491.1 (PREDICTED: uncharacterized protein LOC103503880 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 7.8e-35
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1055 LDRGPLRLTYFSNEDEMGSLVSSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1114

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1115 DHWPCLAYVDDYLEALFL 1132

[Close]

BLAST of MS018768 vs. NCBI nr
Match: XP_038876028.1 (uncharacterized protein LOC120068363 [Benincasa hispida])

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1054 LDRGPLRLTYFSNEDEMGSLVSSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1113

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAY+DDYLEALFL
Sbjct: 1114 DHWPCLAYIDDYLEALFL 1131

[Close]

BLAST of MS018768 vs. NCBI nr
Match: XP_011654553.1 (uncharacterized protein LOC101219595 [Cucumis sativus] >KGN49775.1 hypothetical protein Csa_017786 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS ++S+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1056 LDRGPLRLTYFSNEDEMGSLVTSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1115

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1116 DHWPCLAYVDDYLEALFL 1133

[Close]

BLAST of MS018768 vs. ExPASy Swiss-Prot
Match: F6S215 (AP-5 complex subunit beta-1 OS=Xenopus tropicalis OX=8364 GN=ap5b1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.7e-05
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 27  NMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRTDHWPCLAYVDDYL 74
           N G + I +FLPP+FH+L  ++  D +    +RTD+W  L Y++ +L
Sbjct: 831 NGGEYKIAVFLPPQFHILMHIKSQDDTACFSVRTDNWNLLPYLNSHL 877

[Close]

BLAST of MS018768 vs. ExPASy TrEMBL
Match: A0A6J1CX39 (AP-5 complex subunit beta-1 OS=Momordica charantia OX=3673 GN=LOC111015598 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 9.6e-39
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1   LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
           LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT
Sbjct: 259 LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 318

Query: 61  DHWPCLAYVDDYLEALFL 79
           DHWPCLAYVDDYLEALFL
Sbjct: 319 DHWPCLAYVDDYLEALFL 336

[Close]

BLAST of MS018768 vs. ExPASy TrEMBL
Match: A0A5D3BDX5 (AP-5 complex subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00880 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.8e-35
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1055 LDRGPLRLTYFSNEDEMGSLVSSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1114

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1115 DHWPCLAYVDDYLEALFL 1132

[Close]

BLAST of MS018768 vs. ExPASy TrEMBL
Match: A0A1S3CRD3 (AP-5 complex subunit beta-1 OS=Cucumis melo OX=3656 GN=LOC103503880 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.8e-35
Identity = 72/78 (92.31%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS +SS+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1055 LDRGPLRLTYFSNEDEMGSLVSSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1114

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1115 DHWPCLAYVDDYLEALFL 1132

[Close]

BLAST of MS018768 vs. ExPASy TrEMBL
Match: A0A0A0KJ67 (AP-5 complex subunit beta-1 OS=Cucumis sativus OX=3659 GN=Csa_5G118180 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.4e-35
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS ++S+KRNMGHFHILIFLPPRFHLLFQ+EVSDFSTLVRIRT
Sbjct: 1056 LDRGPLRLTYFSNEDEMGSLVTSYKRNMGHFHILIFLPPRFHLLFQMEVSDFSTLVRIRT 1115

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1116 DHWPCLAYVDDYLEALFL 1133

[Close]

BLAST of MS018768 vs. ExPASy TrEMBL
Match: A0A6J1GY96 (AP-5 complex subunit beta-1 OS=Cucurbita moschata OX=3662 GN=LOC111458401 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            LDRGPLRLTYFS EDE GS ISS+KRNMGHFHILIFLPPRFHLLFQ+EVSD STLVRIRT
Sbjct: 1053 LDRGPLRLTYFSNEDEMGSNISSYKRNMGHFHILIFLPPRFHLLFQMEVSDCSTLVRIRT 1112

Query: 61   DHWPCLAYVDDYLEALFL 79
            DHWPCLAYVDDYLEALFL
Sbjct: 1113 DHWPCLAYVDDYLEALFL 1130

[Close]

BLAST of MS018768 vs. TAIR 10
Match: AT3G19870.1 (unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). )

HSP 1 Score: 107.1 bits (266), Expect = 6.6e-24
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1    LDRGPLRLTYFSTEDETGSPISSHKRNMGHFHILIFLPPRFHLLFQVEVSDFSTLVRIRT 60
            L+RGPLRLTY    D+   P++  +  MG   +L+FLPPR+HL+F++EV   STLV IRT
Sbjct: 1013 LNRGPLRLTYIGYGDDQEVPMTRSRGKMGTIKMLMFLPPRYHLMFEMEVGQGSTLVHIRT 1072

Query: 61   DHWPCLAYVDDYLEALFL 79
            D+WPCLAYVDDYLEALFL
Sbjct: 1073 DYWPCLAYVDDYLEALFL 1090

The following BLAST results are available for this feature:

BLAST of MS018768 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146370.1	2.0e-38	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111015598, partial [Momordica ch...	[more]
KAA0067550.1	7.8e-35	92.31	AP-5 complex subunit beta-1 [Cucumis melo var. makuwa] >TYJ97204.1 AP-5 complex ...	[more]
XP_008466491.1	7.8e-35	92.31	PREDICTED: uncharacterized protein LOC103503880 [Cucumis melo]	[more]
XP_038876028.1	1.0e-34	91.03	uncharacterized protein LOC120068363 [Benincasa hispida]	[more]
XP_011654553.1	1.7e-34	91.03	uncharacterized protein LOC101219595 [Cucumis sativus] >KGN49775.1 hypothetical ...	[more]

BLAST of MS018768 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F6S215	6.7e-05	38.30	AP-5 complex subunit beta-1 OS=Xenopus tropicalis OX=8364 GN=ap5b1 PE=3 SV=1	[more]

BLAST of MS018768 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX39	9.6e-39	100.00	AP-5 complex subunit beta-1 OS=Momordica charantia OX=3673 GN=LOC111015598 PE=4 ...	[more]
A0A5D3BDX5	3.8e-35	92.31	AP-5 complex subunit beta-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CRD3	3.8e-35	92.31	AP-5 complex subunit beta-1 OS=Cucumis melo OX=3656 GN=LOC103503880 PE=4 SV=1	[more]
A0A0A0KJ67	8.4e-35	91.03	AP-5 complex subunit beta-1 OS=Cucumis sativus OX=3659 GN=Csa_5G118180 PE=4 SV=1	[more]
A0A6J1GY96	1.9e-34	92.31	AP-5 complex subunit beta-1 OS=Cucurbita moschata OX=3662 GN=LOC111458401 PE=4 S...	[more]

BLAST of MS018768 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19870.1	6.6e-24	61.54	unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038741	AP-5 complex subunit beta-1	PANTHER	PTHR34033	AP-5 COMPLEX SUBUNIT BETA-1	coord: 30..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018768.1	MS018768.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016197	endosomal transport