MS018736 (gene) Bitter gourd (TR) v1

Overview
NameMS018736
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTRAF-like family protein
Locationscaffold313: 1576815 .. 1577573 (+)
RNA-Seq ExpressionMS018736
SyntenyMS018736
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATAAGGTCCACCCGAGATGAAAAACCAGTCCATTATACCCTAAAAATCCAATCTTTTTCGTTGCTGAAGGATGTACTTGCTAGTTCCAAGCGTGAAATATACGAATCCCAGAACTTCGATGCCGGCGGTTATAAATGGTGAATTGTATAAAAGAATTCCATTATTAGATTTTTACATTGCAAATCCAAGTAATATTGGTTTCAGTTTGTAACTGTTTTTGTTTCTGGGACTATTTTGTTTGTTGTTGTAGGAAATTAGCTCCGTATCCCAATGGAGATGAGAAAAGAAATGAGTGGGATCATATTTCCCTCTATTTGGTTACGGCTGATGATAACATTTTATCAATTACTTGTGAGCTCAATGTTGTGTTTACGTTTCTTGTTTATGACAGTATCAGAGACAAATATTTGACAATCCAAGGTAACCAAAGCTGAAAACATTGAGGTTTCTTAAGTTTTCTTTTGAAGTTTTGTTTGATCATATTCATATTTGTATAATACATCACTGTGTGATCTTGATGATTCAGATGGGAAAATGAGACGTTTTAGTGCAATCAAGACAGAGTGGGGCTTTCAAAAGTTGGTTTCACTTGAAACTTTCAATGATCCTTCAAATGGGCTCTTGGTTGATGATTGCTGTGTTTTTGGAGTGGACATTTTTGTTATGAAATGTTATGGCAAAGGGGAGGTCTTTTCCTTCATCAAGCAACCCAAAAATTACAAATATACCTGGAAAATCAACAAATTTTCTCAGCTA

mRNA sequence

GTTATAAGGTCCACCCGAGATGAAAAACCAGTCCATTATACCCTAAAAATCCAATCTTTTTCGTTGCTGAAGGATGTACTTGCTAGTTCCAAGCGTGAAATATACGAATCCCAGAACTTCGATGCCGGCGGTTATAAATGGAAATTAGCTCCGTATCCCAATGGAGATGAGAAAAGAAATGAGTGGGATCATATTTCCCTCTATTTGGTTACGGCTGATGATAACATTTTATCAATTACTTGTGAGCTCAATGTTGTGTTTACGTTTCTTGTTTATGACAGTATCAGAGACAAATATTTGACAATCCAAGATGGGAAAATGAGACGTTTTAGTGCAATCAAGACAGAGTGGGGCTTTCAAAAGTTGGTTTCACTTGAAACTTTCAATGATCCTTCAAATGGGCTCTTGGTTGATGATTGCTGTGTTTTTGGAGTGGACATTTTTGTTATGAAATGTTATGGCAAAGGGGAGGTCTTTTCCTTCATCAAGCAACCCAAAAATTACAAATATACCTGGAAAATCAACAAATTTTCTCAGCTA

Coding sequence (CDS)

GTTATAAGGTCCACCCGAGATGAAAAACCAGTCCATTATACCCTAAAAATCCAATCTTTTTCGTTGCTGAAGGATGTACTTGCTAGTTCCAAGCGTGAAATATACGAATCCCAGAACTTCGATGCCGGCGGTTATAAATGGAAATTAGCTCCGTATCCCAATGGAGATGAGAAAAGAAATGAGTGGGATCATATTTCCCTCTATTTGGTTACGGCTGATGATAACATTTTATCAATTACTTGTGAGCTCAATGTTGTGTTTACGTTTCTTGTTTATGACAGTATCAGAGACAAATATTTGACAATCCAAGATGGGAAAATGAGACGTTTTAGTGCAATCAAGACAGAGTGGGGCTTTCAAAAGTTGGTTTCACTTGAAACTTTCAATGATCCTTCAAATGGGCTCTTGGTTGATGATTGCTGTGTTTTTGGAGTGGACATTTTTGTTATGAAATGTTATGGCAAAGGGGAGGTCTTTTCCTTCATCAAGCAACCCAAAAATTACAAATATACCTGGAAAATCAACAAATTTTCTCAGCTA

Protein sequence

VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQKLVSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL
Homology
BLAST of MS018736 vs. NCBI nr
Match: XP_038875772.1 (uncharacterized protein LOC120068142 [Benincasa hispida])

HSP 1 Score: 282.0 bits (720), Expect = 3.7e-72
Identity = 136/181 (75.14%), Postives = 156/181 (86.19%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+ STR EKPVHYTLKIQSFSLLK+ LASS+R+ +ESQ F+AG Y+WKLA YPNGDE+RN
Sbjct: 25  VVMSTRHEKPVHYTLKIQSFSLLKNGLASSQRQRFESQKFNAGCYEWKLALYPNGDERRN 84

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             +HISLYLV   +NILS T E+NVVFTFLVYD++R KYLT+QDGKMRRFSA+KTEWG +
Sbjct: 85  VSNHISLYLVIVGNNILSTTSEVNVVFTFLVYDTLRGKYLTVQDGKMRRFSAMKTEWGIE 144

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKC-YGKGEVFSFIKQPKNYKYTWKINKFSQ 180
           KL+ L+TFND SNG LVDDCCVFGVDIFVM C  G GEVFS IKQPKNY+YTWK+N FSQ
Sbjct: 145 KLLPLDTFNDASNGFLVDDCCVFGVDIFVMSCDGGMGEVFSLIKQPKNYEYTWKLNNFSQ 204

BLAST of MS018736 vs. NCBI nr
Match: KAE8648447.1 (hypothetical protein Csa_008888 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 1.9e-68
Identity = 130/181 (71.82%), Postives = 149/181 (82.32%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+ S+R EKPVHY LKIQSFSLLK+ LA S R+ +ESQ F+AGGY+WKLA YPNGD++R+
Sbjct: 28  VVTSSRYEKPVHYILKIQSFSLLKEGLACSPRQRFESQKFNAGGYEWKLALYPNGDQRRD 87

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV   DNILS T E+N VFTFLVYD++R KYLT+QDGKMRRFSA KTEWG +
Sbjct: 88  VSDHISLYLVMVGDNILSTTSEVNAVFTFLVYDTLRGKYLTVQDGKMRRFSATKTEWGIE 147

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKC-YGKGEVFSFIKQPKNYKYTWKINKFSQ 180
           KL+ L TF D SNG LVDDCCVFGVDIFVM    GKGEVFS I+QP NYKYTWK+N FS+
Sbjct: 148 KLLPLNTFKDASNGFLVDDCCVFGVDIFVMNSDVGKGEVFSLIEQPNNYKYTWKLNNFSK 207

BLAST of MS018736 vs. NCBI nr
Match: XP_022146381.1 (ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia])

HSP 1 Score: 261.9 bits (668), Expect = 4.0e-66
Identity = 128/180 (71.11%), Postives = 146/180 (81.11%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+  TRDEKP+HYTL+IQSFSLLK  LA+S  + YESQ F+AGGYKWKLA YPNGD KRN
Sbjct: 17  VLSFTRDEKPLHYTLQIQSFSLLKTALAASNCDRYESQIFNAGGYKWKLAVYPNGDVKRN 76

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV A+D I   T E+NVVFTFLVYD++ DKYL +QD K+RRF +I+TEW F+
Sbjct: 77  GSDHISLYLVKAEDGI--PTSEVNVVFTFLVYDNLNDKYLAVQDEKVRRFHSIQTEWEFE 136

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 180
           KL+SLETFND SNG LV DCC FGVDI V KC GKGEV SFIK+PKN +YTWK N FSQL
Sbjct: 137 KLISLETFNDSSNGFLVGDCCAFGVDIVVKKCDGKGEVVSFIKEPKNNEYTWKTNNFSQL 194

BLAST of MS018736 vs. NCBI nr
Match: XP_022146382.1 (uncharacterized protein LOC111015610 [Momordica charantia])

HSP 1 Score: 261.5 bits (667), Expect = 5.2e-66
Identity = 127/180 (70.56%), Postives = 144/180 (80.00%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+RS RDEKP+HYTL+IQ FSLLK  LA+S R+ YES  F   G+KWKLA YP+GD KRN
Sbjct: 53  VLRSIRDEKPLHYTLQIQPFSLLKTALATSSRDRYESPIFSVAGFKWKLAVYPSGDVKRN 112

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             +HISLYLVTA+D+I   T +L VVFT LVYD++RD YL + DGK+RRF A+K EWGF+
Sbjct: 113 GSNHISLYLVTAEDDI--PTLDLTVVFTILVYDNLRDNYLAVLDGKVRRFHAMKKEWGFE 172

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 180
           KLVSLETFND SNG LVDDCC FGVDIFVMKC GKGE  S IKQPKN KYTWK N FSQL
Sbjct: 173 KLVSLETFNDSSNGFLVDDCCAFGVDIFVMKCDGKGEALSLIKQPKNNKYTWKTNNFSQL 230

BLAST of MS018736 vs. NCBI nr
Match: TYJ98189.1 (MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.6e-65
Identity = 125/181 (69.06%), Postives = 148/181 (81.77%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+ STR EKP+HY LKIQSFSLLK+ +ASS  + +ESQ F AGG +WKLA YPNGD++R+
Sbjct: 56  VVTSTRYEKPIHYILKIQSFSLLKEAVASSPCQRFESQKFYAGGSEWKLALYPNGDQRRD 115

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV  ++NILS T E+NVVFTFLVYD++R KYLT+QD KMR+FSA K EWG +
Sbjct: 116 VSDHISLYLVRVENNILSTTSEVNVVFTFLVYDTLRGKYLTVQDEKMRQFSATKREWGIE 175

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKC-YGKGEVFSFIKQPKNYKYTWKINKFSQ 180
           KL+ L TF+D SNG LVDDCCVFGVDIFVM C   KGEVFS IKQP NYKYTWK++ FS+
Sbjct: 176 KLLPLNTFSDASNGFLVDDCCVFGVDIFVMNCNVEKGEVFSLIKQPNNYKYTWKLDNFSK 235

BLAST of MS018736 vs. ExPASy Swiss-Prot
Match: Q9FPT1 (Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 0

Query: 7   DEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEWDHIS 66
           D   + +T  I +FS        + R+ Y S  F  GGYKW++  +P G    N  DH+S
Sbjct: 51  DPPTLKFTWTIPNFS------RQNTRKHY-SDVFVVGGYKWRILIFPKG----NNVDHLS 110

Query: 67  LYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQKLVSLE 126
           +YL  +D   L         F+  V + I  +Y T++     +F+A +++WGF   + L 
Sbjct: 111 MYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRY-TVRKETQHQFNARESDWGFTSFMPLS 170

Query: 127 TFNDPSNGLLVDDCCVFGVDIFVMK 152
              DPS G LV+D  +   ++ V K
Sbjct: 171 ELYDPSRGYLVNDTVLVEAEVAVRK 183

BLAST of MS018736 vs. ExPASy Swiss-Prot
Match: Q84WU2 (Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.4e-10
Identity = 35/115 (30.43%), Postives = 59/115 (51.30%), Query Frame = 0

Query: 37  SQNFDAGGYKWKLAPYPNGDEKRNEWDHISLYLVTADDNILSITCELNVVFTFLVYDSIR 96
           S  F  GGYKW++  +P G    N  DH+S+YL  AD   L         F+  V + + 
Sbjct: 73  SDVFVVGGYKWRILIFPKG----NNVDHLSMYLDVADAANLPYGWSRYSQFSLAVVNQVN 132

Query: 97  DKYLTIQDGKMRRFSAIKTEWGFQKLVSLETFNDPSNGLLVDDCCVFGVDIFVMK 152
           ++Y +I+     +F+A +++WGF   + L    +P+ G LV+D  +   ++ V K
Sbjct: 133 NRY-SIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRK 182

BLAST of MS018736 vs. ExPASy Swiss-Prot
Match: Q9M2J5 (MATH domain and coiled-coil domain-containing protein At3g58210 OS=Arabidopsis thaliana OX=3702 GN=At3g58210 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-07
Identity = 40/146 (27.40%), Postives = 66/146 (45.21%), Query Frame = 0

Query: 13  YTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEWDHISLYLVTA 72
           +T  IQ+FS       SS+  +  S  F  GG KW+L  YP G  K    DH+SL+L  A
Sbjct: 9   FTWVIQNFS-------SSQSRVVPSNQFVIGGCKWRLLVYPEGFNKSG--DHLSLFLEVA 68

Query: 73  DDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQKLVSLETFNDPS 132
           D   L      +  +   + +   DK ++ ++   + F+     WG   ++ L   +   
Sbjct: 69  DPRSLPPGWSRHARYLLTIVNQHSDK-ISKRNEATKWFNQKIPGWGLSAMIPLTKLHAKD 128

Query: 133 NGLLVDDCCVFGVDIFVMKCYGKGEV 159
            G LV+D      ++ V++  GK +V
Sbjct: 129 GGFLVNDELKIVAEVNVLEVIGKLDV 144

BLAST of MS018736 vs. ExPASy Swiss-Prot
Match: A1L4W5 (BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=BPM6 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 34/147 (23.13%), Postives = 58/147 (39.46%), Query Frame = 0

Query: 17  IQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEWDHISLYLVTADDNI 76
           IQ +SL K +          S NF  GGY+W +  YP+G    +   ++S+++V A +  
Sbjct: 42  IQGYSLAKGIGVGKH---IASDNFSVGGYQWTIFVYPDGKNPEDNSSYVSVFIVLASE-- 101

Query: 77  LSITCELNVVFTFLVYD-------SIRDKYLTIQDGKMRRFSAIKTEWGFQKLVSLETFN 136
                E+  +F   + D        +   +    DG         + WG+++        
Sbjct: 102 ---CTEVRALFELSLVDQSGKGKHKVHSHFNRSLDGGPYTLKYRGSMWGYKRFFRRSLLE 161

Query: 137 DPSNGLLVDDC----CVFGVDIFVMKC 153
             ++  L DDC    C  GV +  M C
Sbjct: 162 --TSDYLKDDCLKINCTVGVVVSEMHC 178

BLAST of MS018736 vs. ExPASy Swiss-Prot
Match: A8MQL1 (TNF receptor-associated factor homolog 1b OS=Arabidopsis thaliana OX=3702 GN=TRAF1B PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.7e-04
Identity = 38/128 (29.69%), Postives = 59/128 (46.09%), Query Frame = 0

Query: 13  YTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEWDHISLYLVTA 72
           YT KI  FS +      +KRE + S  F+AGGYKW +  YP G +  N   H+SL+L  A
Sbjct: 70  YTWKIPKFSEI------TKRE-HRSNVFEAGGYKWYILIYPQGCDVCN---HLSLFLCVA 129

Query: 73  D-DNILSITCEL---------NVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQKL 131
           + D +L  +  +             + L  D  + K+       + RF   + +WG++K 
Sbjct: 130 NYDKLLPGSFAILEAGWSQFAQFTISVLSQDLKKSKF----SDTLHRFWKKEHDWGWKKF 183

BLAST of MS018736 vs. ExPASy TrEMBL
Match: A0A0A0KND8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G432550 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.3e-69
Identity = 130/181 (71.82%), Postives = 149/181 (82.32%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+ S+R EKPVHY LKIQSFSLLK+ LA S R+ +ESQ F+AGGY+WKLA YPNGD++R+
Sbjct: 28  VVTSSRYEKPVHYILKIQSFSLLKEGLACSPRQRFESQKFNAGGYEWKLALYPNGDQRRD 87

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV   DNILS T E+N VFTFLVYD++R KYLT+QDGKMRRFSA KTEWG +
Sbjct: 88  VSDHISLYLVMVGDNILSTTSEVNAVFTFLVYDTLRGKYLTVQDGKMRRFSATKTEWGIE 147

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKC-YGKGEVFSFIKQPKNYKYTWKINKFSQ 180
           KL+ L TF D SNG LVDDCCVFGVDIFVM    GKGEVFS I+QP NYKYTWK+N FS+
Sbjct: 148 KLLPLNTFKDASNGFLVDDCCVFGVDIFVMNSDVGKGEVFSLIEQPNNYKYTWKLNNFSK 207

BLAST of MS018736 vs. ExPASy TrEMBL
Match: A0A6J1CZ69 (ubiquitin carboxyl-terminal hydrolase 13-like OS=Momordica charantia OX=3673 GN=LOC111015609 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.9e-66
Identity = 128/180 (71.11%), Postives = 146/180 (81.11%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+  TRDEKP+HYTL+IQSFSLLK  LA+S  + YESQ F+AGGYKWKLA YPNGD KRN
Sbjct: 17  VLSFTRDEKPLHYTLQIQSFSLLKTALAASNCDRYESQIFNAGGYKWKLAVYPNGDVKRN 76

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV A+D I   T E+NVVFTFLVYD++ DKYL +QD K+RRF +I+TEW F+
Sbjct: 77  GSDHISLYLVKAEDGI--PTSEVNVVFTFLVYDNLNDKYLAVQDEKVRRFHSIQTEWEFE 136

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 180
           KL+SLETFND SNG LV DCC FGVDI V KC GKGEV SFIK+PKN +YTWK N FSQL
Sbjct: 137 KLISLETFNDSSNGFLVGDCCAFGVDIVVKKCDGKGEVVSFIKEPKNNEYTWKTNNFSQL 194

BLAST of MS018736 vs. ExPASy TrEMBL
Match: A0A6J1CZF7 (uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015610 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 127/180 (70.56%), Postives = 144/180 (80.00%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+RS RDEKP+HYTL+IQ FSLLK  LA+S R+ YES  F   G+KWKLA YP+GD KRN
Sbjct: 53  VLRSIRDEKPLHYTLQIQPFSLLKTALATSSRDRYESPIFSVAGFKWKLAVYPSGDVKRN 112

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             +HISLYLVTA+D+I   T +L VVFT LVYD++RD YL + DGK+RRF A+K EWGF+
Sbjct: 113 GSNHISLYLVTAEDDI--PTLDLTVVFTILVYDNLRDNYLAVLDGKVRRFHAMKKEWGFE 172

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 180
           KLVSLETFND SNG LVDDCC FGVDIFVMKC GKGE  S IKQPKN KYTWK N FSQL
Sbjct: 173 KLVSLETFNDSSNGFLVDDCCAFGVDIFVMKCDGKGEALSLIKQPKNNKYTWKTNNFSQL 230

BLAST of MS018736 vs. ExPASy TrEMBL
Match: A0A5D3BGM0 (MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00770 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 125/181 (69.06%), Postives = 148/181 (81.77%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V+ STR EKP+HY LKIQSFSLLK+ +ASS  + +ESQ F AGG +WKLA YPNGD++R+
Sbjct: 56  VVTSTRYEKPIHYILKIQSFSLLKEAVASSPCQRFESQKFYAGGSEWKLALYPNGDQRRD 115

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV  ++NILS T E+NVVFTFLVYD++R KYLT+QD KMR+FSA K EWG +
Sbjct: 116 VSDHISLYLVRVENNILSTTSEVNVVFTFLVYDTLRGKYLTVQDEKMRQFSATKREWGIE 175

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKC-YGKGEVFSFIKQPKNYKYTWKINKFSQ 180
           KL+ L TF+D SNG LVDDCCVFGVDIFVM C   KGEVFS IKQP NYKYTWK++ FS+
Sbjct: 176 KLLPLNTFSDASNGFLVDDCCVFGVDIFVMNCNVEKGEVFSLIKQPNNYKYTWKLDNFSK 235

BLAST of MS018736 vs. ExPASy TrEMBL
Match: A0A5A7U9P8 (MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00550 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65
Identity = 124/181 (68.51%), Postives = 148/181 (81.77%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           ++ STR EKP+HY LKIQSFSLLK+ +ASS  + +ESQ F AGG +WKLA YPNGD++R+
Sbjct: 56  IVTSTRYEKPIHYILKIQSFSLLKEAVASSPCQRFESQKFYAGGSEWKLALYPNGDQRRD 115

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLYLV  ++NILS T E+NVVFTFLVYD++R KYLT+QD KMR+FSA K EWG +
Sbjct: 116 VSDHISLYLVRVENNILSTTSEVNVVFTFLVYDTLRGKYLTVQDEKMRQFSATKREWGIE 175

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKC-YGKGEVFSFIKQPKNYKYTWKINKFSQ 180
           KL+ L TF+D SNG LVDDCCVFGVDIFVM C   KGEVFS IKQP NYKYTWK++ FS+
Sbjct: 176 KLLPLNTFSDASNGFLVDDCCVFGVDIFVMNCNVEKGEVFSLIKQPNNYKYTWKLDNFSK 235

BLAST of MS018736 vs. TAIR 10
Match: AT3G17380.1 (TRAF-like family protein )

HSP 1 Score: 168.7 bits (426), Expect = 4.3e-42
Identity = 85/182 (46.70%), Postives = 115/182 (63.19%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           +I+S  D  P HY +KI+SFSL    L     E YE+++F+AGGYKWKL  YPNG++ +N
Sbjct: 10  IIKSISDAPPTHYMVKIESFSL----LTKHAIERYETESFEAGGYKWKLVLYPNGNKSKN 69

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DH+S+YL  AD + LS   E+  VF   + D  +D YL +Q G  RRF ++K EWGF 
Sbjct: 70  TKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQ-GNERRFHSVKREWGFD 129

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMK--CYGKGEVFSFIKQPKNYKYTWKINKFS 180
           K +   TF+D SNG L++D C+FG D+FV K    G+GE  S IK   + K+ WKI  FS
Sbjct: 130 KFIPTGTFSDASNGYLMEDTCMFGADVFVSKERRSGRGECLSMIKDATSSKHVWKIENFS 186

BLAST of MS018736 vs. TAIR 10
Match: AT3G20360.1 (TRAF-like family protein )

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32
Identity = 75/180 (41.67%), Postives = 104/180 (57.78%), Query Frame = 0

Query: 2   IRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNE 61
           ++  R+  P  Y+LK++SF+ L   + S   E YES+ F  G Y W L  YP G++  N 
Sbjct: 58  VKGLRERPPSSYSLKMESFNTL---MKSVYTERYESRPFRVGRYNWTLVVYPKGNKNDNG 117

Query: 62  WDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQK 121
             HISLY+V  +  + S + E++V   F V++    KY TIQD  + RFSAIK  WGF K
Sbjct: 118 TGHISLYVVLDNSTLTSQSEEVHVDLRFYVFNKKETKYFTIQDTDVWRFSAIKRMWGFSK 177

Query: 122 LVSLETFNDPSNGLLVD-DCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 181
           ++ L TFN+  NG L D D C FGVD+ +   Y K EVFS  K   + ++TW I  +S L
Sbjct: 178 VLPLITFNNLKNGYLYDVDHCEFGVDVIIPPFYEKSEVFSVTKSFPSPRFTWYIQGYSTL 234

BLAST of MS018736 vs. TAIR 10
Match: AT5G26280.1 (TRAF-like family protein )

HSP 1 Score: 131.7 bits (330), Expect = 5.8e-31
Identity = 71/180 (39.44%), Postives = 102/180 (56.67%), Query Frame = 0

Query: 1   VIRSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRN 60
           V R  R+E+P    + I SFS++K      + E YES  F+A GYKW+L  Y NG++   
Sbjct: 50  VTRELREERPSSKIVTITSFSVIK-----GRGEPYESSVFEAAGYKWRLVLYVNGNKNDG 109

Query: 61  EWDHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQ 120
             DHISLY    + N L +  E+NV     V++    KYLT+ DG ++R++  K EWGF 
Sbjct: 110 GNDHISLYARIEETNSLPLGWEVNVDLKLFVHNGKLHKYLTVTDGLVKRYNNAKKEWGFG 169

Query: 121 KLVSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 180
           +L+   TF + + G L  D   FG +IF++K   + E  +FI  P N  +TWKI +FS L
Sbjct: 170 QLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQQQEKVTFISNPPNNVFTWKILRFSTL 224

BLAST of MS018736 vs. TAIR 10
Match: AT5G26260.1 (TRAF-like family protein )

HSP 1 Score: 131.3 bits (329), Expect = 7.6e-31
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 0

Query: 3   RSTRDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEW 62
           R  RDE+P    + I SFS++KD     + E YES  F+A GYKW+L  Y  G+ K    
Sbjct: 53  RELRDERPSSKIVTITSFSVIKD-----RGEPYESSIFEAAGYKWRLVLYVKGNPKGGIN 112

Query: 63  DHISLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQKL 122
           +HISLY    +   L    E+NV     V++    KYL++ DG ++R++  K EWGF +L
Sbjct: 113 NHISLYARIEETETLPRGWEVNVDLKLFVHNRKLKKYLSVTDGTVKRYNDAKKEWGFTQL 172

Query: 123 VSLETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 181
           +SL TF + + G LV D   FG +IF++    K E  +FI  P +  +TWKI +FS L
Sbjct: 173 ISLPTFYNANEGYLVQDTASFGAEIFIVNPTEKQEKVTFISNPPDNVFTWKILRFSTL 225

BLAST of MS018736 vs. TAIR 10
Match: AT2G04170.1 (TRAF-like family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-30
Identity = 71/175 (40.57%), Postives = 98/175 (56.00%), Query Frame = 0

Query: 6   RDEKPVHYTLKIQSFSLLKDVLASSKREIYESQNFDAGGYKWKLAPYPNGDEKRNEWDHI 65
           RDE+P +  L I SFS++K      + E YES  F+AGGYKW+L  Y NG++     +HI
Sbjct: 125 RDERPSNKILTITSFSVIK-----GRGEPYESSVFEAGGYKWRLVLYVNGNQNDGGNNHI 184

Query: 66  SLYLVTADDNILSITCELNVVFTFLVYDSIRDKYLTIQDGKMRRFSAIKTEWGFQKLVSL 125
           SLY+   +   L    E+NV     VY+  + KYL ++DG ++R++  K EWG+ KL+ L
Sbjct: 185 SLYVRIEETESLPKGWEVNVELKLFVYNGKQRKYLIVKDGIVKRYNDAKKEWGYGKLIPL 244

Query: 126 ETFNDPSNGLLVDDCCVFGVDIFVMKCYGKGEVFSFIKQPKNYKYTWKINKFSQL 181
            TF D + G L  D   FG +IF        E  +FI  P N  +TWKI  FS L
Sbjct: 245 TTFLDTNEGYLEQDIASFGAEIFSGTAVQVQEKVTFISNPPNNVFTWKILHFSNL 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875772.13.7e-7275.14uncharacterized protein LOC120068142 [Benincasa hispida][more]
KAE8648447.11.9e-6871.82hypothetical protein Csa_008888 [Cucumis sativus][more]
XP_022146381.14.0e-6671.11ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia][more]
XP_022146382.15.2e-6670.56uncharacterized protein LOC111015610 [Momordica charantia][more]
TYJ98189.12.6e-6569.06MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q9FPT15.0e-1130.34Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 ... [more]
Q84WU29.4e-1030.43Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 ... [more]
Q9M2J53.3e-0727.40MATH domain and coiled-coil domain-containing protein At3g58210 OS=Arabidopsis t... [more]
A1L4W54.5e-0423.13BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=... [more]
A8MQL17.7e-0429.69TNF receptor-associated factor homolog 1b OS=Arabidopsis thaliana OX=3702 GN=TRA... [more]
Match NameE-valueIdentityDescription
A0A0A0KND89.3e-6971.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G432550 PE=4 SV=1[more]
A0A6J1CZ691.9e-6671.11ubiquitin carboxyl-terminal hydrolase 13-like OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1CZF72.5e-6670.56uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A5D3BGM01.3e-6569.06MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuw... [more]
A0A5A7U9P81.6e-6568.51MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuw... [more]
Match NameE-valueIdentityDescription
AT3G17380.14.3e-4246.70TRAF-like family protein [more]
AT3G20360.11.8e-3241.67TRAF-like family protein [more]
AT5G26280.15.8e-3139.44TRAF-like family protein [more]
AT5G26260.17.6e-3139.89TRAF-like family protein [more]
AT2G04170.11.7e-3040.57TRAF-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002083MATH/TRAF domainSMARTSM00061math_3coord: 15..128
e-value: 0.0086
score: 25.3
IPR002083MATH/TRAF domainPFAMPF00917MATHcoord: 33..148
e-value: 3.2E-9
score: 37.0
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 10..147
score: 24.763327
IPR002083MATH/TRAF domainCDDcd00121MATHcoord: 12..147
e-value: 2.22139E-20
score: 80.1158
IPR008974TRAF-likeGENE3D2.60.210.10Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain Acoord: 2..154
e-value: 4.1E-36
score: 126.1
NoneNo IPR availablePANTHERPTHR46162TRAF-LIKE FAMILY PROTEINcoord: 4..180
NoneNo IPR availablePANTHERPTHR46162:SF40UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12-LIKEcoord: 4..180
NoneNo IPR availableSUPERFAMILY49599TRAF domain-likecoord: 10..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018736.1MS018736.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding