MS018698 (gene) Bitter gourd (TR) v1

Overview


Name	MS018698
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic
Location	scaffold313: 1154439 .. 1156374 (+)
RNA-Seq Expression	MS018698
Synteny	MS018698

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCAACCAAGCTACTACCATCTCACCTCCATCCTCTTCCTTCCCCCAAATCCTTCTCCACCGGAGACCTACCTCCGCCGTCATGCCTCCCCGGACCTCGCACTCTCGTCAGGCCGCAGAGATCGGTAACGGTGAGAGTCAATGCGGAGCCGCTCCTCGCTCTCCAATTGGACCACCACAACTCCGCCTTCTTCCTCGCTGACACCGTCGGCTACTCCATGGCTAGCTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTGTGGTCACTCATCAAGCGATCCGTCAAATCCAAGGTTCTCTTAATCCACATACAATTTCAATTTCAATTTCAATTCCTCGCTCTGGCTCTGGCTCTGGCTCTGTTTCCATCGGTAATGGATTGAATTACGAATCGCATTCGCATCGGTTTTAGGTTGTGAAGAAGACATTCGTCGCCGAAGGAGAATCGAAGAAGGCGCCGAGCCAGATCGCCGGAGAGATCTTGTCATTCTTCACTCGCAACAACTTCCAAGTCACGGACAGAGGCGAAACCATAACGTACGTAACCCGATTCTCATAGATTATTTTGTGAGTGTTGTTCATCATCTTCAGTTTAATGGCGAAGAAGAAATTACCTAACAACTAACGAAGCGAAGGTTTTGATTGATGTGAAGATTTGAAGGAGCGATGGTGCCGAGTCGAGGCCAAGCGGCATTGCTGACATTCTGTACTTGCATTAGCCTGGCCAGCGTCGCCCTCGTCCTCACCATAACTTTTCCAGATTTCGGCAACAACTGGTTCTGGATTAGCAGCCTCAGTCCCCTAGCGTAAGTTCTGCAACTCATCGATGGACTCAGTTTTGGATCACTTTGGGCTTCTGGCCCAAATTATAATGGGCCTCAAACTTAAGCTTTTCCAGGCCCTATTTTGGTGGGTTTGGATCGTTTAATGGACCTCCAAGGATAAAGTTCATAATCTAATCCTAAACTCAATATTAAAAACATTTAAAATATGATAAACAAATACCGTATATAGAATTACATTTTACAATATAGGAATAAATTCTACTAAGTTTGGGTAGGACTTTGTTTAGTTCTTAAAATTTCATTTAAATCTTTAAACTTTAAAACAAATTGCAAGGTCACCAAGATCTAAATTGTACTGCCACATTTTCTACTGACTGTTTATAATCATTTTGTAAAGATTAGGAAAAAAACCAGAATCCTGACCCGGTAATGTTTAGAAGTTCAAGTAACTTCCGTAAAAAATAATAATAATAAAAAAAAAATCAACTTTAAGTTGAGAAATACTTTTTAGTCCCTATACTATTACACGATTTAATCATGTACGGTAACAATTTAATCTCTAAATTTTAGTATATAATAACTTAAAATTAAGTGTCAATTTTTATTCTATAAAAGATTTAATTGGATCAAATCATTACAAACTTTAAACTAGACATCCTAAAGGTCCCTGTTACCAATTTAGAAGTACAACAAAACTTCAACAACTATCAAATTCAAAATCTATCTGTTTTTTTATATAATTAAAAAAAAAAAAAAACTAGGATTCCAGAAGTAGAGAGTAAAATACAAGACACAGAGATTTTAAAAATATCCATTAGAACCAAAAAGTATTAATCAACTTTTTGAAGTAGAAACAAAATGAATTAGTTGGTTCTCAGATCCAAATTGAGATTGAGAAACATGACAATTGAGAGTACCTGAGAAGCTAATGTGAAGGTGTTGTGAAACCTGCAGAGGAGCATATTACTGGGTGAAAGCATCAAGAAGGGAGGAGATAAAGGTCAAAATGATAGTTGCAGAAGGTGGAAAGCTTGCAGAGATTATTGTTCAAGGAGATGACCAACAAGTAGAGCTTATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTCTATGTCAAAGGCATTTTTGAGCAA

mRNA sequence

GCAGCAACCAAGCTACTACCATCTCACCTCCATCCTCTTCCTTCCCCCAAATCCTTCTCCACCGGAGACCTACCTCCGCCGTCATGCCTCCCCGGACCTCGCACTCTCGTCAGGCCGCAGAGATCGGTAACGGTGAGAGTCAATGCGGAGCCGCTCCTCGCTCTCCAATTGGACCACCACAACTCCGCCTTCTTCCTCGCTGACACCGTCGGCTACTCCATGGCTAGCTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTGTGGTCACTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACATTCGTCGCCGAAGGAGAATCGAAGAAGGCGCCGAGCCAGATCGCCGGAGAGATCTTGTCATTCTTCACTCGCAACAACTTCCAAGTCACGGACAGAGGCGAAACCATAACATTTGAAGGAGCGATGGTGCCGAGTCGAGGCCAAGCGGCATTGCTGACATTCTGTACTTGCATTAGCCTGGCCAGCGTCGCCCTCGTCCTCACCATAACTTTTCCAGATTTCGGCAACAACTGGTTCTGGATTAGCAGCCTCAGTCCCCTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAGGGAGGAGATAAAGGTCAAAATGATAGTTGCAGAAGGTGGAAAGCTTGCAGAGATTATTGTTCAAGGAGATGACCAACAAGTAGAGCTTATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTCTATGTCAAAGGCATTTTTGAGCAA

Coding sequence (CDS)

GCAGCAACCAAGCTACTACCATCTCACCTCCATCCTCTTCCTTCCCCCAAATCCTTCTCCACCGGAGACCTACCTCCGCCGTCATGCCTCCCCGGACCTCGCACTCTCGTCAGGCCGCAGAGATCGGTAACGGTGAGAGTCAATGCGGAGCCGCTCCTCGCTCTCCAATTGGACCACCACAACTCCGCCTTCTTCCTCGCTGACACCGTCGGCTACTCCATGGCTAGCTACTACACTTCTCTCGGCCTCTTCGTCATCTCCGTCCCTGGCTTGTGGTCACTCATCAAGCGATCCGTCAAATCCAAGGTTGTGAAGAAGACATTCGTCGCCGAAGGAGAATCGAAGAAGGCGCCGAGCCAGATCGCCGGAGAGATCTTGTCATTCTTCACTCGCAACAACTTCCAAGTCACGGACAGAGGCGAAACCATAACATTTGAAGGAGCGATGGTGCCGAGTCGAGGCCAAGCGGCATTGCTGACATTCTGTACTTGCATTAGCCTGGCCAGCGTCGCCCTCGTCCTCACCATAACTTTTCCAGATTTCGGCAACAACTGGTTCTGGATTAGCAGCCTCAGTCCCCTAGCAGGAGCATATTACTGGGTGAAAGCATCAAGAAGGGAGGAGATAAAGGTCAAAATGATAGTTGCAGAAGGTGGAAAGCTTGCAGAGATTATTGTTCAAGGAGATGACCAACAAGTAGAGCTTATGAGAAAGGAGCTTCAGTTGAGTGAAAAAGGCATGGTCTATGTCAAAGGCATTTTTGAGCAA

Protein sequence

AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKELQLSEKGMVYVKGIFEQ

Homology

[Close]

BLAST of MS018698 vs. NCBI nr
Match: XP_022141475.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Momordica charantia])

HSP 1 Score: 499.6 bits (1285), Expect = 1.6e-137
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH 60
           AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH
Sbjct: 4   AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH 63

Query: 61  NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ 120
           NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ
Sbjct: 64  NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ 123

Query: 121 IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD 180
           IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD
Sbjct: 124 IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD 183

Query: 181 FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL 240
           FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL
Sbjct: 184 FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL 243

Query: 241 QLSEKGMVYVKGIFEQ 257
           QLSEKGMVYVKGIFEQ
Sbjct: 244 QLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. NCBI nr
Match: XP_023550037.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 424.1 bits (1089), Expect = 8.6e-115
Identity = 221/259 (85.33%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 2   ATKLLPSHLHPLPS----PKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQL 61
           A K+LPSHL+PLPS    P SFS GDL P  C  GPRT  RPQRSV VRVN EPL+A Q 
Sbjct: 2   AAKILPSHLYPLPSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSVAVRVNVEPLVAFQ- 61

Query: 62  DHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKA 121
           DHHNSAF LA++VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+EGESKKA
Sbjct: 62  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 121

Query: 122 PSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTIT 181
           P+Q AGEILSFFTRNNFQVTDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 122 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 181

Query: 182 FPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMR 241
           FPD GNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIV E G L EIIVQGDDQQVE MR
Sbjct: 182 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 241

Query: 242 KELQLSEKGMVYVKGIFEQ 257
           KELQLSEKGMVYVKGIFEQ
Sbjct: 242 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. NCBI nr
Match: XP_022938901.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita moschata] >KAG6579098.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 420.2 bits (1079), Expect = 1.2e-113
Identity = 220/259 (84.94%), Postives = 228/259 (88.03%), Query Frame = 0


Query: 2   ATKLLPSHLHPLPS----PKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQL 61
           A K LPSHL+PLPS    P SFS GDL P  C   PRT  RPQRSV VRVN EPL+A Q 
Sbjct: 2   AVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ- 61

Query: 62  DHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKA 121
           DHHNSAF LA++VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+EGESKKA
Sbjct: 62  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 121

Query: 122 PSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTIT 181
           P+Q AGEILSFFTRNNFQVTDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 122 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 181

Query: 182 FPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMR 241
           FPD GNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIV E G L EIIVQGDDQQVE MR
Sbjct: 182 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 241

Query: 242 KELQLSEKGMVYVKGIFEQ 257
           KELQLSEKGMVYVKGIFEQ
Sbjct: 242 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. NCBI nr
Match: KAG7016624.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 417.2 bits (1071), Expect = 1.1e-112
Identity = 219/259 (84.56%), Postives = 227/259 (87.64%), Query Frame = 0


Query: 2   ATKLLPSHLHPLPS----PKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQL 61
           A K LPSHL+PLPS    P SFS GDL P  C   PRT  RPQRSV VRVN EPL+A Q 
Sbjct: 2   AVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ- 61

Query: 62  DHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKA 121
           DH NSAF LA++VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+EGESKKA
Sbjct: 62  DHQNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 121

Query: 122 PSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTIT 181
           P+Q AGEILSFFTRNNFQVTDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 122 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 181

Query: 182 FPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMR 241
           FPD GNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIV E G L EIIVQGDDQQVE MR
Sbjct: 182 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 241

Query: 242 KELQLSEKGMVYVKGIFEQ 257
           KELQLSEKGMVYVKGIFEQ
Sbjct: 242 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. NCBI nr
Match: XP_022992736.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 415.6 bits (1067), Expect = 3.1e-112
Identity = 217/259 (83.78%), Postives = 227/259 (87.64%), Query Frame = 0


Query: 2   ATKLLPSHLHPLPS----PKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQL 61
           A K LPSHL+PL S    P SFS GDL P  C  GPRT  RPQRS+ VRVN EPL+A Q 
Sbjct: 2   AVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ- 61

Query: 62  DHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKA 121
           D HNS F LA++VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+EGESKKA
Sbjct: 62  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 121

Query: 122 PSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTIT 181
           P+Q AGEILSFFTRNNF+VTDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 122 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 181

Query: 182 FPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMR 241
           FPD GNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIVAE G L EIIVQGDDQQVE MR
Sbjct: 182 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 241

Query: 242 KELQLSEKGMVYVKGIFEQ 257
           KELQLSEKGMVYVKGIFEQ
Sbjct: 242 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. ExPASy Swiss-Prot
Match: Q9LSE4 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB1 PE=1 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.6e-79
Identity = 154/197 (78.17%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 61  NSAFFLAD-TVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPS 120
           NS   + + T GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + KK P 
Sbjct: 70  NSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVV-NDVKKEPK 129

Query: 121 QIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFP 180
           Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT P
Sbjct: 130 QVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVP 189

Query: 181 DFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKE 240
           DFGNNWF+I  LSPLAG YYW KASR+EEIKVKM+V   G+L EI+VQGDD QVE MRKE
Sbjct: 190 DFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKE 249

Query: 241 LQLSEKGMVYVKGIFEQ 257
           LQL+EKGMVYVKG+FE+
Sbjct: 250 LQLNEKGMVYVKGLFER 265

[Close]

BLAST of MS018698 vs. ExPASy TrEMBL
Match: A0A6J1CI70 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011858 PE=4 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 7.8e-138
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH 60
           AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH
Sbjct: 4   AATKLLPSHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH 63

Query: 61  NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ 120
           NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ
Sbjct: 64  NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ 123

Query: 121 IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD 180
           IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD
Sbjct: 124 IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD 183

Query: 181 FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL 240
           FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL
Sbjct: 184 FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL 243

Query: 241 QLSEKGMVYVKGIFEQ 257
           QLSEKGMVYVKGIFEQ
Sbjct: 244 QLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. ExPASy TrEMBL
Match: A0A6J1FEF5 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111444976 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 6.0e-114
Identity = 220/259 (84.94%), Postives = 228/259 (88.03%), Query Frame = 0


Query: 2   ATKLLPSHLHPLPS----PKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQL 61
           A K LPSHL+PLPS    P SFS GDL P  C   PRT  RPQRSV VRVN EPL+A Q 
Sbjct: 2   AVKFLPSHLYPLPSPSLPPSSFSAGDLTPRPCFGRPRTHFRPQRSVAVRVNVEPLVAFQ- 61

Query: 62  DHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKA 121
           DHHNSAF LA++VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+EGESKKA
Sbjct: 62  DHHNSAFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 121

Query: 122 PSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTIT 181
           P+Q AGEILSFFTRNNFQVTDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 122 PNQFAGEILSFFTRNNFQVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 181

Query: 182 FPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMR 241
           FPD GNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIV E G L EIIVQGDDQQVE MR
Sbjct: 182 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGSLGEIIVQGDDQQVEQMR 241

Query: 242 KELQLSEKGMVYVKGIFEQ 257
           KELQLSEKGMVYVKGIFEQ
Sbjct: 242 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. ExPASy TrEMBL
Match: A0A6J1JUD8 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488985 PE=4 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.5e-112
Identity = 217/259 (83.78%), Postives = 227/259 (87.64%), Query Frame = 0


Query: 2   ATKLLPSHLHPLPS----PKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQL 61
           A K LPSHL+PL S    P SFS GDL P  C  GPRT  RPQRS+ VRVN EPL+A Q 
Sbjct: 2   AVKFLPSHLYPLSSPSLPPSSFSAGDLTPRPCFGGPRTHFRPQRSIAVRVNVEPLVAFQ- 61

Query: 62  DHHNSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKA 121
           D HNS F LA++VGYS ASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+EGESKKA
Sbjct: 62  DQHNSTFLLAESVGYSTASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEGESKKA 121

Query: 122 PSQIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTIT 181
           P+Q AGEILSFFTRNNF+VTDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT
Sbjct: 122 PNQFAGEILSFFTRNNFEVTDRGETITFEGTMVPSRGQAALLTFCTCISLASVGLVLTIT 181

Query: 182 FPDFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMR 241
           FPD GNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIVAE G L EIIVQGDDQQVE MR
Sbjct: 182 FPDIGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVAEDGSLGEIIVQGDDQQVEQMR 241

Query: 242 KELQLSEKGMVYVKGIFEQ 257
           KELQLSEKGMVYVKGIFEQ
Sbjct: 242 KELQLSEKGMVYVKGIFEQ 259

[Close]

BLAST of MS018698 vs. ExPASy TrEMBL
Match: A0A5A7VG78 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00110 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.2e-109
Identity = 214/256 (83.59%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 2   ATKLLP-SHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH 61
           A KLLP SH +PLPS  SFS  DL P  C   PRT  +P RSVTV+VNAEPL+ALQ +H+
Sbjct: 2   AAKLLPSSHFYPLPS-NSFSAVDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQ-EHN 61

Query: 62  NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ 121
           NSAF LA++VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+E ESKK P+Q
Sbjct: 62  NSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQ 121

Query: 122 IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD 181
           IAGEILSFFTRNNFQVT RGETITFEGAMVPSRGQAALLTFCTCISLASV LVLTITFPD
Sbjct: 122 IAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPD 181

Query: 182 FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL 241
           FGNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIV E G+L EIIVQGDDQQ++ MRKEL
Sbjct: 182 FGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKEL 241

Query: 242 QLSEKGMVYVKGIFEQ 257
           +LSEKGMVYVKGIFEQ
Sbjct: 242 KLSEKGMVYVKGIFEQ 255

[Close]

BLAST of MS018698 vs. ExPASy TrEMBL
Match: A0A1S3CPE0 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503108 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.5e-109
Identity = 214/256 (83.59%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 2   ATKLLP-SHLHPLPSPKSFSTGDLPPPSCLPGPRTLVRPQRSVTVRVNAEPLLALQLDHH 61
           A KLLP SH +PLPS  SFS  DL P  C   PRT  +P RSVTV+VNAEPL+ALQ +H+
Sbjct: 2   AAKLLPSSHFYPLPS-NSFSAIDLSPRPCFIRPRTHFKPHRSVTVKVNAEPLIALQ-EHN 61

Query: 62  NSAFFLADTVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPSQ 121
           NSAF LA++VGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFV+E ESKK P+Q
Sbjct: 62  NSAFLLAESVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVSEDESKKEPNQ 121

Query: 122 IAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFPD 181
           IAGEILSFFTRNNFQVT RGETITFEGAMVPSRGQAALLTFCTCISLASV LVLTITFPD
Sbjct: 122 IAGEILSFFTRNNFQVTGRGETITFEGAMVPSRGQAALLTFCTCISLASVGLVLTITFPD 181

Query: 182 FGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKEL 241
           FGNNWFW+SSLSPLAGAYYWVKASR+EEIKVKMIV E G+L EIIVQGDDQQ++ MRKEL
Sbjct: 182 FGNNWFWLSSLSPLAGAYYWVKASRKEEIKVKMIVGEDGRLGEIIVQGDDQQIDQMRKEL 241

Query: 242 QLSEKGMVYVKGIFEQ 257
           +LSEKGMVYVKGIFEQ
Sbjct: 242 KLSEKGMVYVKGIFEQ 255

[Close]

BLAST of MS018698 vs. TAIR 10
Match: AT3G26710.1 (cofactor assembly of complex C )

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-80
Identity = 154/197 (78.17%), Postives = 170/197 (86.29%), Query Frame = 0


Query: 61  NSAFFLAD-TVGYSMASYYTSLGLFVISVPGLWSLIKRSVKSKVVKKTFVAEGESKKAPS 120
           NS   + + T GYS+ASYYTSLGLFVISVPGLWSLIKRSVKSK+V+KTFV   + KK P 
Sbjct: 70  NSLLLMTEATGGYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVV-NDVKKEPK 129

Query: 121 QIAGEILSFFTRNNFQVTDRGETITFEGAMVPSRGQAALLTFCTCISLASVALVLTITFP 180
           Q+AGEILSFFTR NF +TDRGETITFEG MVPSRGQAALLTFCTCISLASV LVLTIT P
Sbjct: 130 QVAGEILSFFTRKNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVP 189

Query: 181 DFGNNWFWISSLSPLAGAYYWVKASRREEIKVKMIVAEGGKLAEIIVQGDDQQVELMRKE 240
           DFGNNWF+I  LSPLAG YYW KASR+EEIKVKM+V   G+L EI+VQGDD QVE MRKE
Sbjct: 190 DFGNNWFFIILLSPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKE 249

Query: 241 LQLSEKGMVYVKGIFEQ 257
           LQL+EKGMVYVKG+FE+
Sbjct: 250 LQLNEKGMVYVKGLFER 265

The following BLAST results are available for this feature:

BLAST of MS018698 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141475.1	1.6e-137	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Momordica ...	[more]
XP_023550037.1	8.6e-115	85.33	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022938901.1	1.2e-113	84.94	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
KAG7016624.1	1.1e-112	84.56	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]
XP_022992736.1	3.1e-112	83.78	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic [Cucurbita ...	[more]

BLAST of MS018698 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSE4	1.6e-79	78.17	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Arabidop...	[more]

BLAST of MS018698 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CI70	7.8e-138	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Momordic...	[more]
A0A6J1FEF5	6.0e-114	84.94	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A6J1JUD8	1.5e-112	83.78	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucurbit...	[more]
A0A5A7VG78	1.2e-109	83.59	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CPE0	1.5e-109	83.59	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic OS=Cucumis ...	[more]

BLAST of MS018698 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26710.1	1.1e-80	78.17	cofactor assembly of complex C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PFAM	PF12046	CCB1	coord: 76..242 e-value: 9.5E-54 score: 181.3
IPR021919	Cofactor assembly of complex C subunit B, CCB1	PANTHER	PTHR35302	FAMILY NOT NAMED	coord: 38..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018698.1	MS018698.1	mRNA