MS018636 (gene) Bitter gourd (TR) v1

Overview
NameMS018636
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold313: 610214 .. 610399 (-)
RNA-Seq ExpressionMS018636
SyntenyMS018636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAACAAATAGGCTAGCTCGAGATTTCAATTGCATATCCTGTGCTCTAGAAGGTCCATCAATTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGATTTGGGATATTCCTCACTCCATGACATGGCACCTTTCGCTCATCCATTCCGCCCGCCGTCCAGACACGACGCCCTTTTTC

mRNA sequence

ATAACAAATAGGCTAGCTCGAGATTTCAATTGCATATCCTGTGCTCTAGAAGGTCCATCAATTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGATTTGGGATATTCCTCACTCCATGACATGGCACCTTTCGCTCATCCATTCCGCCCGCCGTCCAGACACGACGCCCTTTTTC

Coding sequence (CDS)

ATAACAAATAGGCTAGCTCGAGATTTCAATTGCATATCCTGTGCTCTAGAAGGTCCATCAATTCCTCGGCAGCACCTCGAGGTGCATTTTGTTGTCTTACATGAGATTTGGGATATTCCTCACTCCATGACATGGCACCTTTCGCTCATCCATTCCGCCCGCCGTCCAGACACGACGCCCTTTTTC

Protein sequence

ITNRLARDFNCISCALEGPSIPRQHLEVHFVVLHEIWDIPHSMTWHLSLIHSARRPDTTPFF
Homology
BLAST of MS018636 vs. NCBI nr
Match: XP_027186080.1 (uncharacterized protein LOC113784115 [Cicer arietinum])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1  ITNRLARDFNCISCALEGPSIPRQHLEVHFVVLHEIWDIPHSM 44
          ITNRLA   NC+SCA EGP +PRQHLEVH VVLHE   IPHSM
Sbjct: 20 ITNRLALSLNCLSCAREGPPVPRQHLEVHLVVLHETRGIPHSM 62

BLAST of MS018636 vs. NCBI nr
Match: RZB52060.1 (hypothetical protein D0Y65_048471 [Glycine soja])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 24  QHLEVHFVVLHEIWDIPHSMTWHLSLIHSARRPDTTPFF 63
           +HLEVH VVL E  DIPHSM WHLSLIHSA RPD  PFF
Sbjct: 337 KHLEVHLVVLPETRDIPHSMAWHLSLIHSA-RPDAAPFF 374

BLAST of MS018636 vs. ExPASy TrEMBL
Match: A0A0A0L6E8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088940 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1   ITNRLARDFNCISCALEGPSIPRQHLEVHFVVLHEIWDIPHSMTWHLSLIHSARRPDTTP 60
           +  RLARD NC+SCA EGP +PRQHLEVHF VL E  DIPHSM WHLSLIHSA RPD  P
Sbjct: 141 VPERLARDLNCLSCAREGPPVPRQHLEVHFDVLDETRDIPHSMAWHLSLIHSA-RPDAEP 200

Query: 61  FF 63
           FF
Sbjct: 201 FF 201

BLAST of MS018636 vs. ExPASy TrEMBL
Match: A0A3Q7YAX9 (uncharacterized protein LOC113784115 OS=Cicer arietinum OX=3827 GN=LOC113784115 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1  ITNRLARDFNCISCALEGPSIPRQHLEVHFVVLHEIWDIPHSM 44
          ITNRLA   NC+SCA EGP +PRQHLEVH VVLHE   IPHSM
Sbjct: 20 ITNRLALSLNCLSCAREGPPVPRQHLEVHLVVLHETRGIPHSM 62

BLAST of MS018636 vs. ExPASy TrEMBL
Match: A0A445FT23 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048471 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 24  QHLEVHFVVLHEIWDIPHSMTWHLSLIHSARRPDTTPFF 63
           +HLEVH VVL E  DIPHSM WHLSLIHSA RPD  PFF
Sbjct: 337 KHLEVHLVVLPETRDIPHSMAWHLSLIHSA-RPDAAPFF 374

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_027186080.11.5e-0974.42uncharacterized protein LOC113784115 [Cicer arietinum][more]
RZB52060.11.2e-0676.92hypothetical protein D0Y65_048471 [Glycine soja][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6E82.6e-1874.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088940 PE=4 SV=1[more]
A0A3Q7YAX97.5e-1074.42uncharacterized protein LOC113784115 OS=Cicer arietinum OX=3827 GN=LOC113784115 ... [more]
A0A445FT235.9e-0776.92Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048471 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018636.1MS018636.1mRNA