MS018633 (gene) Bitter gourd (TR) v1

Overview
NameMS018633
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionuniversal stress protein A-like protein
Locationscaffold313: 576128 .. 576268 (+)
RNA-Seq ExpressionMS018633
SyntenyMS018633
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGATTTCTCTGCAACAACCAAATCAGCTTTAAAATGGGCTGCACATAAATCTTCTTAGGCATGGATAGATCTCTTAGTTCCCATCCATATTCAGCCTCCCAATTCTGATAGTCCCAAAAAGCTCCTCTTCCAACACACT

mRNA sequence

GTGGATTTCTCTGCAACAACCAAATCAGCTTTAAAATGGGCTGCAAATCTTCTTAGGCATGATCTCTTAGTTCCCATCCATATTCAGCCTCCCAATTCTGATAGTCCCAAAAAGCTCCTCTTCCAACACACT

Coding sequence (CDS)

GTGGATTTCTCTGCAACAACCAAATCAGCTTTAAAATGGGCTGCAAATCTTCTTAGGCATGATCTCTTAGTTCCCATCCATATTCAGCCTCCCAATTCTGATAGTCCCAAAAAGCTCCTCTTCCAACACACT

Protein sequence

VDFSATTKSALKWAANLLRHDLLVPIHIQPPNSDSPKKLLFQHT
Homology
BLAST of MS018633 vs. NCBI nr
Match: XP_023551238.1 (universal stress protein A-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 7.1e-09
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSALKWAA NLL H D L+ IH++PPNSD+P+KLLFQHT
Sbjct: 17 MDYSATSKSALKWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQHT 62

BLAST of MS018633 vs. NCBI nr
Match: XP_022993769.1 (universal stress protein A-like protein [Cucurbita maxima])

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSAL+WAA NLL H D L+ IH++PPNSD+P+KLLFQHT
Sbjct: 17 MDYSATSKSALEWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQHT 62

BLAST of MS018633 vs. NCBI nr
Match: KAG7016574.1 (Universal stress protein A-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSALKWAA NLL H D L+ IH++PPNSD+P+KLLFQ T
Sbjct: 17 MDYSATSKSALKWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQDT 62

BLAST of MS018633 vs. NCBI nr
Match: XP_022938828.1 (universal stress protein A-like protein [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSALKWAA NLL H D L+ IH++PPNSD+P+KLLFQ T
Sbjct: 17 MDYSATSKSALKWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQDT 62

BLAST of MS018633 vs. NCBI nr
Match: KAG6579050.1 (Universal stress protein A-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSALKWAA NLL H D L+ IH++PPNSD+P+KLLFQ T
Sbjct: 13 MDYSATSKSALKWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQDT 58

BLAST of MS018633 vs. ExPASy TrEMBL
Match: A0A6J1K109 (universal stress protein A-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489678 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.0e-08
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSAL+WAA NLL H D L+ IH++PPNSD+P+KLLFQHT
Sbjct: 17 MDYSATSKSALEWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQHT 62

BLAST of MS018633 vs. ExPASy TrEMBL
Match: A0A6J1FK03 (universal stress protein A-like protein OS=Cucurbita moschata OX=3662 GN=LOC111444924 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+SAT+KSALKWAA NLL H D L+ IH++PPNSD+P+KLLFQ T
Sbjct: 17 MDYSATSKSALKWAAHNLLTHGDQLILIHVEPPNSDTPRKLLFQDT 62

BLAST of MS018633 vs. ExPASy TrEMBL
Match: A0A5D3D5Z6 (Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00030 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1  VDFSATTKSALKWAAN--LLRHDLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+S+T+KSALKW AN  L   D LV IH+QPPNSD+P KLLFQ T
Sbjct: 1  MDYSSTSKSALKWTANNLLKDGDHLVLIHVQPPNSDTPTKLLFQDT 46

BLAST of MS018633 vs. ExPASy TrEMBL
Match: A0A5A7TTT6 (Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00860 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1  VDFSATTKSALKWAAN--LLRHDLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+S+T+KSALKW AN  L   D LV IH+QPPNSD+P KLLFQ T
Sbjct: 1  MDYSSTSKSALKWTANNLLKDGDHLVLIHVQPPNSDTPTKLLFQDT 46

BLAST of MS018633 vs. ExPASy TrEMBL
Match: A0A1S3CIK6 (universal stress protein A-like protein OS=Cucumis melo OX=3656 GN=LOC103501360 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1  VDFSATTKSALKWAAN--LLRHDLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+S+T+KSALKW AN  L   D LV IH+QPPNSD+P KLLFQ T
Sbjct: 13 MDYSSTSKSALKWTANNLLKDGDHLVLIHVQPPNSDTPTKLLFQDT 58

BLAST of MS018633 vs. TAIR 10
Match: AT3G03270.1 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-06
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+S T+K AL+WAA NLL   D ++ IH+QP N+D  +K+LF+ T
Sbjct: 11 MDYSPTSKLALRWAAENLLEDGDTVILIHVQPQNADHTRKILFEET 56

BLAST of MS018633 vs. TAIR 10
Match: AT3G03270.2 (Adenine nucleotide alpha hydrolases-like superfamily protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-06
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 1  VDFSATTKSALKWAA-NLLRH-DLLVPIHIQPPNSDSPKKLLFQHT 45
          +D+S T+K AL+WAA NLL   D ++ IH+QP N+D  +K+LF+ T
Sbjct: 11 MDYSPTSKLALRWAAENLLEDGDTVILIHVQPQNADHTRKILFEET 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023551238.17.1e-0971.74universal stress protein A-like protein [Cucurbita pepo subsp. pepo][more]
XP_022993769.12.1e-0869.57universal stress protein A-like protein [Cucurbita maxima][more]
KAG7016574.17.8e-0869.57Universal stress protein A-like protein [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_022938828.17.8e-0869.57universal stress protein A-like protein [Cucurbita moschata][more]
KAG6579050.17.8e-0869.57Universal stress protein A-like protein, partial [Cucurbita argyrosperma subsp. ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1K1091.0e-0869.57universal stress protein A-like protein OS=Cucurbita maxima OX=3661 GN=LOC111489... [more]
A0A6J1FK033.8e-0869.57universal stress protein A-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A5D3D5Z61.2e-0665.22Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TTT61.2e-0665.22Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3CIK61.2e-0665.22universal stress protein A-like protein OS=Cucumis melo OX=3656 GN=LOC103501360 ... [more]
Match NameE-valueIdentityDescription
AT3G03270.11.6e-0650.00Adenine nucleotide alpha hydrolases-like superfamily protein [more]
AT3G03270.21.6e-0650.00Adenine nucleotide alpha hydrolases-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018633.1MS018633.1mRNA