MS018615 (gene) Bitter gourd (TR) v1

Overview


Name	MS018615
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ADP-ribosylation factor-like protein 8c
Location	scaffold313: 446249 .. 448423 (-)
RNA-Seq Expression	MS018615
Synteny	MS018615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATGTTTATTCTTGTCAGCCTGTTCTTCAAACAAGAAATGGAGCTCTCACTTGTAGGCCTCCAGAATGCTGGGAAGACATCTCTTGTGAATGCTATTGCTGTAAGAAAATGCAAACTTTCATATCCGGTTTTTGTCTAAGTGAACTGCCTTCTCATCTGCTGATACTTTTCAAATTTTACAGACAGGGGGTTACAGTGAAGATATGATTCCAACTGTCAGTATGTTTTCCTTTCAAGTTCATTATTTATGCTCTGGTAATTGAATGTATCTTACGATTTCACCTCGCACTCTGACATCAGGTGGGGTTTAATATGCGAAAAGTTACAAAGGGCAATGTTACAATTAAGCTTTGGGACCTTGGAGGACAAAGGAGATTTCGCATGATGTGGGAACGATATTGCCGTGGCGTGTCTGCAATTGTGTAAATATCCCGAGTCTCTAAACCTTTCTTCCATTCTTTTCTTAGATATATTTGTTACTTGAGCTTATAATATGGCTGATTGTTTATTTAAACACCAGAGCTTAATAAAATTTAGATCGATACCAAGCAAACAAATTATTGCATTCAGATATAACATCCTCTTATCCAATTAACATGATCCATACTTATTTTGCATTAAAATAATCGTCTCGTCTCTTCTCTGATTTAGAGTATTCAAGTTATTCTTTTTCCAATTAACATTTTTCACATTAGTATGATAGAACCCGAACTAGAAATATATTGAAATATAAAAGATAGAGTAACTACAATATTTTCCGAGTAATTCAAGGTACTTGGAATCTCCCCTCTCTTGAGTATTCTTACTCAAGACTAAACCATACTAATTAATTGGCTACCATTATCCTTACCCCCTCACTGTATTTATAACCGAACCCTCAACCCAATTACTAATATACCCTTGATATCCTAATACTTTCGCCAATCTATCCTAACAGCAATTTTATCGTAATATTAAAATATAGATTCTCCGAGCTCTTTGAGAGGCCTAGACTCTCCTCTTTCAAAGAAATCTCTAGTATGCTAAATTGCTCGTATCTAAATCAGTATCTATTCCCTGTTTTTTTAGTTGTTTATGTTGTACCATATAAGGAATTAGAATAGGCTTCTATTCTTTATCTGTCAACGTGACATCAGTTTCGATGTCTACACGTTTTTCTATAGCTGAGATATTCATGTCTCATCCTAAGCCTAGAACTTATTCGATTTAGAGGTATAAATTTGCATTCATGTGAAATTGCTGGTGGGTACTTTGAATTTTGATGATGATGTCTATTTTAGCTTCTAGAATTAGAAAAAGATTTTAGTTACGTCCCTAAATTTTGAAGTGTGATTTCATGTTGCCCTTGTCAGTAACACAATTAATTAAATGATGTGAAATATCTATTGGAAAAATGTTGGCCGATTTGGTGTGATGTACGAACAACTGACAGAAGGAAGTACAGAATTGGACTAAATAAATTGACAAGGTCTATGAAAGGTGATATCTTTGATATGTTGGGCATACTACTTTATGTTGTTCAGCTATTTACTTCTTTAAGATATTTCTCTCTCGTGTCATGACAAATAAGCTACATTTATCCAATAGGCATCTTACATCATTATTTAGTTAACGGCATTAACTACAAGAACGGTATAGAATCAAAACCTTGAAGATGATGTTGTTAAAACCTTTTACAGTTTAGAGACGAAAAAGATACTACCATCAAAGTTCAAGACTAAATCCAGAAATTAACGTTTTTTCCGTCTCTTGGTTATTAGTTTATCGTTTGTCCTGATATATGGTTGGTGCAAGGTCAGGTATGTTGTTGATTCTGCTGATAGGGATAGTGTTCCCATATCAAGAAGTGAACTCCATGAGCTCTTGACAAAACCTTCATTAAGTGGAATTCCTCTGCTTGTTCTGGGCAACAAAATTGACAAGTCAGAAGCACTTTCCAAGCAGTCACTGGTTGATTTGTTGTGAGTCCCAAATATTTTGTCGATGACTTGGAACGATATTCTCTGTTAATATTGAAAATTATTTTTTGACGATAATCTTTTCGATTCTTTCCCGCAGAGAACTTGAATCAATTCGTGACAGGGAGGTATGCTGCTACATGATCTCTTGCAAAGATTCGGTAAACATCGATGTTGTGATCGATTGGCTTATCAAACACTCGAAAACAGCAGGA

mRNA sequence

ATTATGTTTATTCTTGTCAGCCTGTTCTTCAAACAAGAAATGGAGCTCTCACTTGTAGGCCTCCAGAATGCTGGGAAGACATCTCTTGTGAATGCTATTGCTACAGGGGGTTACAGTGAAGATATGATTCCAACTGTGGGGTTTAATATGCGAAAAGTTACAAAGGGCAATGTTACAATTAAGCTTTGGGACCTTGGAGGACAAAGGAGATTTCGCATGATGTGGGAACGATATTGCCGTGGCGTGTCTGCAATTGTGTATGTTGTTGATTCTGCTGATAGGGATAGTGTTCCCATATCAAGAAGTGAACTCCATGAGCTCTTGACAAAACCTTCATTAAGTGGAATTCCTCTGCTTGTTCTGGGCAACAAAATTGACAAGTCAGAAGCACTTTCCAAGCAGTCACTGGTTGATTTGTTAGAACTTGAATCAATTCGTGACAGGGAGGTATGCTGCTACATGATCTCTTGCAAAGATTCGGTAAACATCGATGTTGTGATCGATTGGCTTATCAAACACTCGAAAACAGCAGGA

Coding sequence (CDS)

ATTATGTTTATTCTTGTCAGCCTGTTCTTCAAACAAGAAATGGAGCTCTCACTTGTAGGCCTCCAGAATGCTGGGAAGACATCTCTTGTGAATGCTATTGCTACAGGGGGTTACAGTGAAGATATGATTCCAACTGTGGGGTTTAATATGCGAAAAGTTACAAAGGGCAATGTTACAATTAAGCTTTGGGACCTTGGAGGACAAAGGAGATTTCGCATGATGTGGGAACGATATTGCCGTGGCGTGTCTGCAATTGTGTATGTTGTTGATTCTGCTGATAGGGATAGTGTTCCCATATCAAGAAGTGAACTCCATGAGCTCTTGACAAAACCTTCATTAAGTGGAATTCCTCTGCTTGTTCTGGGCAACAAAATTGACAAGTCAGAAGCACTTTCCAAGCAGTCACTGGTTGATTTGTTAGAACTTGAATCAATTCGTGACAGGGAGGTATGCTGCTACATGATCTCTTGCAAAGATTCGGTAAACATCGATGTTGTGATCGATTGGCTTATCAAACACTCGAAAACAGCAGGA

Protein sequence

IMFILVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNKIDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG

Homology

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BLAST of MS018615 vs. NCBI nr
Match: XP_022141678.1 (ADP-ribosylation factor-like protein 8c [Momordica charantia])

HSP 1 Score: 342.4 bits (877), Expect = 2.3e-90
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. NCBI nr
Match: XP_022961143.1 (ADP-ribosylation factor-like protein 8c [Cucurbita moschata] >XP_023512849.1 ADP-ribosylation factor-like protein 8c [Cucurbita pepo subsp. pepo] >KAG7032720.1 ADP-ribosylation factor-like protein 8c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.4 bits (864), Expect = 7.4e-89
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDS+NIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSINIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. NCBI nr
Match: KAG6602026.1 (ADP-ribosylation factor-like protein 8c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 337.4 bits (864), Expect = 7.4e-89
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 50  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 109

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 110 LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 169

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDS+NIDVVIDWLIKHSKTAG
Sbjct: 170 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSINIDVVIDWLIKHSKTAG 223

[Close]

BLAST of MS018615 vs. NCBI nr
Match: XP_022991181.1 (ADP-ribosylation factor-like protein 8c [Cucurbita maxima])

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-88
Identity = 168/174 (96.55%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDS+NID VIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSINIDAVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. NCBI nr
Match: XP_004140300.1 (ADP-ribosylation factor-like protein 8c [Cucumis sativus] >XP_038876072.1 ADP-ribosylation factor-like protein 8c [Benincasa hispida] >XP_038876073.1 ADP-ribosylation factor-like protein 8c [Benincasa hispida] >XP_038876074.1 ADP-ribosylation factor-like protein 8c [Benincasa hispida] >KGN51060.1 hypothetical protein Csa_008272 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 167/174 (95.98%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPIS+SELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISKSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELE+IRDREVCCYMISCKDS+NIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELETIRDREVCCYMISCKDSINIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. ExPASy Swiss-Prot
Match: Q8W4C8 (ADP-ribosylation factor-like protein 8c OS=Arabidopsis thaliana OX=3702 GN=ARL8C PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 6.1e-86
Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIK+WD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKIWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGVSAIVYV+D+ADRDSVPISRSEL++LLTKPSL+GIPLL+LGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLNGIPLLILGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTA 178
           IDKSEALSKQ+LVD L LES+ DREVCCYMISCKDS+NID VIDWLIKHS+TA
Sbjct: 131 IDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHSRTA 183

[Close]

BLAST of MS018615 vs. ExPASy Swiss-Prot
Match: Q8VY57 (ADP-ribosylation factor-like protein 8a OS=Arabidopsis thaliana OX=3702 GN=ARL8A PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 4.8e-75
Identity = 137/172 (79.65%), Postives = 155/172 (90.12%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQ RFR MWERYCR VSAIVYVVD+AD D++ +S+SELH+LL+K SL+GIPLLVLGNK
Sbjct: 71  LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKT 177
           IDK  ALSK++L D + L S+ DREVCC+MISCK+S NID VIDWL+KHSK+
Sbjct: 131 IDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKS 182

[Close]

BLAST of MS018615 vs. ExPASy Swiss-Prot
Match: Q93Y31 (ADP-ribosylation factor-like protein 8b OS=Arabidopsis thaliana OX=3702 GN=ARL8B PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 8.2e-75
Identity = 136/173 (78.61%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKG+VTIKLWD
Sbjct: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQ RFR MWERYCR VSAIVYVVD+AD D++ +S+SELH+LL+K SL+GIPLLVLGNK
Sbjct: 71  LGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTA 178
           IDK  ALSK++L D + L+S+ DREVCC+MISCK+S NID VIDWL+KHSK++
Sbjct: 131 IDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSS 183

[Close]

BLAST of MS018615 vs. ExPASy Swiss-Prot
Match: Q6NZW8 (ADP-ribosylation factor-like protein 8B-A OS=Danio rerio OX=7955 GN=arl8ba PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-64
Identity = 115/170 (67.65%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 7   SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 66
           SLF+K+EMEL+LVGLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14  SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73

Query: 67  GQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNKID 126
           GQ RFR MWERYCRGV+AIVY+VD+ADR+ V  SR+ELH LL KP L GIP+LVLGNK D
Sbjct: 74  GQPRFRSMWERYCRGVNAIVYMVDAADREKVEASRNELHNLLDKPQLQGIPVLVLGNKRD 133

Query: 127 KSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKT 177
              AL ++ L++ + L +I+DRE+CCY ISCK+  NID+ + WLI+HSK+
Sbjct: 134 LPNALDEKQLIEKMNLAAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183

[Close]

BLAST of MS018615 vs. ExPASy Swiss-Prot
Match: Q9NVJ2 (ADP-ribosylation factor-like protein 8B OS=Homo sapiens OX=9606 GN=ARL8B PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-64
Identity = 113/170 (66.47%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 7   SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLG 66
           SLF+K+EMEL+LVGLQ +GKT+ VN IA+G +SEDMIPTVGFNMRKVTKGNVTIK+WD+G
Sbjct: 14  SLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIG 73

Query: 67  GQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNKID 126
           GQ RFR MWERYCRGV+AIVY++D+ADR+ +  SR+ELH LL KP L GIP+LVLGNK D
Sbjct: 74  GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRD 133

Query: 127 KSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKT 177
              AL ++ L++ + L +I+DRE+CCY ISCK+  NID+ + WLI+HSK+
Sbjct: 134 LPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 183

[Close]

BLAST of MS018615 vs. ExPASy TrEMBL
Match: A0A6J1CL74 (ADP-ribosylation factor-like protein 8c OS=Momordica charantia OX=3673 GN=LOC111011982 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.1e-90
Identity = 173/174 (99.43%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. ExPASy TrEMBL
Match: A0A6J1HB08 (ADP-ribosylation factor-like protein 8c OS=Cucurbita moschata OX=3662 GN=LOC111461740 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.6e-89
Identity = 169/174 (97.13%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDS+NIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSINIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. ExPASy TrEMBL
Match: A0A6J1JQ11 (ADP-ribosylation factor-like protein 8c OS=Cucurbita maxima OX=3661 GN=LOC111487854 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.0e-88
Identity = 168/174 (96.55%), Postives = 171/174 (98.28%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDS+NID VIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSINIDAVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. ExPASy TrEMBL
Match: A0A0A0KN64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G424890 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.8e-88
Identity = 167/174 (95.98%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVYVVDSADRDSVPIS+SELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYVVDSADRDSVPISKSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELE+IRDREVCCYMISCKDS+NIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELETIRDREVCCYMISCKDSINIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. ExPASy TrEMBL
Match: A0A1S3CDX0 (ADP-ribosylation factor-like protein 8A OS=Cucumis melo OX=3656 GN=LOC103499330 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.3e-88
Identity = 166/174 (95.40%), Postives = 172/174 (98.85%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVN+IATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGV+AIVY+VDSADRDSVPIS+SELHELLTKPSLSGIPLLVLGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVTAIVYIVDSADRDSVPISKSELHELLTKPSLSGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTAG 179
           IDKSEALSKQSLVDLLELE+IRDREVCCYMISCKDS+NIDVVIDWLIKHSKTAG
Sbjct: 131 IDKSEALSKQSLVDLLELETIRDREVCCYMISCKDSINIDVVIDWLIKHSKTAG 184

[Close]

BLAST of MS018615 vs. TAIR 10
Match: AT5G37680.1 (ADP-ribosylation factor-like A1A )

HSP 1 Score: 318.2 bits (814), Expect = 4.3e-87
Identity = 156/173 (90.17%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIK+WD
Sbjct: 11  LRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKIWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQRRFR MWERYCRGVSAIVYV+D+ADRDSVPISRSEL++LLTKPSL+GIPLL+LGNK
Sbjct: 71  LGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLNGIPLLILGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTA 178
           IDKSEALSKQ+LVD L LES+ DREVCCYMISCKDS+NID VIDWLIKHS+TA
Sbjct: 131 IDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHSRTA 183

[Close]

BLAST of MS018615 vs. TAIR 10
Match: AT3G49870.1 (ADP-ribosylation factor-like A1C )

HSP 1 Score: 282.0 bits (720), Expect = 3.4e-76
Identity = 137/172 (79.65%), Postives = 155/172 (90.12%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD
Sbjct: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQ RFR MWERYCR VSAIVYVVD+AD D++ +S+SELH+LL+K SL+GIPLLVLGNK
Sbjct: 71  LGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKT 177
           IDK  ALSK++L D + L S+ DREVCC+MISCK+S NID VIDWL+KHSK+
Sbjct: 131 IDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKS 182

[Close]

BLAST of MS018615 vs. TAIR 10
Match: AT5G67560.1 (ADP-ribosylation factor-like A1D )

HSP 1 Score: 281.2 bits (718), Expect = 5.9e-76
Identity = 136/173 (78.61%), Postives = 157/173 (90.75%), Query Frame = 0


Query: 5   LVSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWD 64
           L SLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVTKG+VTIKLWD
Sbjct: 11  LRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWD 70

Query: 65  LGGQRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNK 124
           LGGQ RFR MWERYCR VSAIVYVVD+AD D++ +S+SELH+LL+K SL+GIPLLVLGNK
Sbjct: 71  LGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNK 130

Query: 125 IDKSEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKTA 178
           IDK  ALSK++L D + L+S+ DREVCC+MISCK+S NID VIDWL+KHSK++
Sbjct: 131 IDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSS 183

[Close]

BLAST of MS018615 vs. TAIR 10
Match: AT3G49860.1 (ADP-ribosylation factor-like A1B )

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-63
Identity = 116/165 (70.30%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 12  QEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRF 71
           +EMELSLVGLQN+GKTSLVN +ATG YSEDMIPTVGFNMRKVTK NV I+LWDLGGQ RF
Sbjct: 10  KEMELSLVGLQNSGKTSLVNVVATGEYSEDMIPTVGFNMRKVTKENVAIRLWDLGGQPRF 69

Query: 72  RMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNKIDKSEAL 131
           R MWERYCR VS IVYVVD+AD +++ +SRSELH+LL+  SL GIPLLVLGNKID   AL
Sbjct: 70  RCMWERYCRAVSMIVYVVDAADTENLSVSRSELHDLLSNASLIGIPLLVLGNKIDIHGAL 129

Query: 132 SKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKT 177
           SK++L + + L S+  REVCC MISCK+   ID + DWL+ HSK+
Sbjct: 130 SKEALTEEMGLSSVTSREVCCLMISCKNPTTIDQLTDWLVNHSKS 174

[Close]

BLAST of MS018615 vs. TAIR 10
Match: AT5G14670.1 (ADP-ribosylation factor A1B )

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-25
Identity = 60/169 (35.50%), Postives = 89/169 (52.66%), Query Frame = 0


Query: 8   LFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGG 67
           LF K+EM + +VGL  AGKT+++  +  G      IPT+GFN+  V   N++  +WD+GG
Sbjct: 12  LFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGG 71

Query: 68  QRRFRMMWERYCRGVSAIVYVVDSADRDSVPISRSELHELLTKPSLSGIPLLVLGNKIDK 127
           Q + R +W  Y +    +++VVDS DRD V  +R ELH +L +  L    LLV  NK D 
Sbjct: 72  QDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 131

Query: 128 SEALSKQSLVDLLELESIRDREVCCYMISCKDSVNIDVVIDWLIKHSKT 177
             A++   + D L L S+R R              +   +DWL  +  T
Sbjct: 132 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAT 179

The following BLAST results are available for this feature:

BLAST of MS018615 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141678.1	2.3e-90	99.43	ADP-ribosylation factor-like protein 8c [Momordica charantia]	[more]
XP_022961143.1	7.4e-89	97.13	ADP-ribosylation factor-like protein 8c [Cucurbita moschata] >XP_023512849.1 ADP...	[more]
KAG6602026.1	7.4e-89	97.13	ADP-ribosylation factor-like protein 8c, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022991181.1	2.1e-88	96.55	ADP-ribosylation factor-like protein 8c [Cucurbita maxima]	[more]
XP_004140300.1	3.7e-88	95.98	ADP-ribosylation factor-like protein 8c [Cucumis sativus] >XP_038876072.1 ADP-ri...	[more]

BLAST of MS018615 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4C8	6.1e-86	90.17	ADP-ribosylation factor-like protein 8c OS=Arabidopsis thaliana OX=3702 GN=ARL8C...	[more]
Q8VY57	4.8e-75	79.65	ADP-ribosylation factor-like protein 8a OS=Arabidopsis thaliana OX=3702 GN=ARL8A...	[more]
Q93Y31	8.2e-75	78.61	ADP-ribosylation factor-like protein 8b OS=Arabidopsis thaliana OX=3702 GN=ARL8B...	[more]
Q6NZW8	1.0e-64	67.65	ADP-ribosylation factor-like protein 8B-A OS=Danio rerio OX=7955 GN=arl8ba PE=2 ...	[more]
Q9NVJ2	1.3e-64	66.47	ADP-ribosylation factor-like protein 8B OS=Homo sapiens OX=9606 GN=ARL8B PE=1 SV...	[more]

BLAST of MS018615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL74	1.1e-90	99.43	ADP-ribosylation factor-like protein 8c OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1HB08	3.6e-89	97.13	ADP-ribosylation factor-like protein 8c OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JQ11	1.0e-88	96.55	ADP-ribosylation factor-like protein 8c OS=Cucurbita maxima OX=3661 GN=LOC111487...	[more]
A0A0A0KN64	1.8e-88	95.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G424890 PE=3 SV=1	[more]
A0A1S3CDX0	2.3e-88	95.40	ADP-ribosylation factor-like protein 8A OS=Cucumis melo OX=3656 GN=LOC103499330 ...	[more]

BLAST of MS018615 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37680.1	4.3e-87	90.17	ADP-ribosylation factor-like A1A	[more]
AT3G49870.1	3.4e-76	79.65	ADP-ribosylation factor-like A1C	[more]
AT5G67560.1	5.9e-76	78.61	ADP-ribosylation factor-like A1D	[more]
AT3G49860.1	2.5e-63	70.30	ADP-ribosylation factor-like A1B	[more]
AT5G14670.1	8.0e-25	35.50	ADP-ribosylation factor A1B	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006689	Small GTPase superfamily, ARF/SAR type	PRINTS	PR00328	SAR1GTPBP	coord: 15..38 score: 34.56 coord: 116..137 score: 50.0 coord: 71..96 score: 37.78
IPR006689	Small GTPase superfamily, ARF/SAR type	SMART	SM00178	sar_sub_1	coord: 1..174 e-value: 2.4E-11 score: 53.7
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 4..172 e-value: 1.1E-44 score: 152.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 1.3E-7 score: -14.8
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..178 e-value: 3.5E-25 score: 99.7
None	No IPR available	PANTHER	PTHR45732:SF19	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8B ISOFORM X1	coord: 4..177
None	No IPR available	PANTHER	PTHR45732	ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8	coord: 4..177
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..178 score: 9.050634
None	No IPR available	PROSITE	PS51422	SAR1	coord: 1..178 score: 8.645721
None	No IPR available	PROSITE	PS51417	ARF	coord: 7..174 score: 18.585747
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..143 e-value: 2.6E-18 score: 64.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 9..177 e-value: 1.3E-56 score: 192.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..173
IPR044154	ADP-ribosylation factor-like protein 8A/8B	CDD	cd04159	Arl10_like	coord: 15..173 e-value: 5.73782E-102 score: 288.448

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018615.1	MS018615.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding