MS018594 (gene) Bitter gourd (TR) v1

Overview


Name	MS018594
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DFRP_C domain-containing protein
Location	scaffold313: 187862 .. 189772 (+)
RNA-Seq Expression	MS018594
Synteny	MS018594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCAGAAGAAACAGCAGCCGCTATGGAAAAAGAGAAGCTCACATCTCATAACCCAAGGACGAATCCCATCACGGAGGCTCAGTTCCTATCCTGGAAGCGGCAGAAGGTACTTTCTCTCTAGCTTCGCTTAGGGTTTCTCTCGATTTCTGCTTTTTTATGTTCCATCGATCTGTTCTTTTAGGCCGCAATTACTTGTATTTAGTGCCGAGGCCAATAAGATTACAGAATTAGGGTTGCCCTGGATTGGACAAATAATGAATATTGCAAGAGTAACTTGAAAATTCAAATGATGAGAATTTGAAAAGCTCTTAAGTATTTATTCAATTTACCCGAAGTTGTGGAAAATTCAACCGTAGAAATGAACATTAAATGGCCCACATCAAATTTACCCGAAGTTGGGAAAAGGAATTGGTTAATGAGAAACGAAAGGTGCGTATGGATATAATGACTGAGATAGTTCTAGCCTTCTAGGATTGTGTTGTCTTGTTTTGTTCAGTGGTTTTAATAAGAAACCAGCCAGCTTTAGGGCCTGCAGAAAAGAGCACCTAGACGAAGGAGCAAAGTAAAAAAGAAAAAAAAAAAAGAGATTAAATCAACATTACGAATTTACGAGATAATGCTCCAATTATGAAGAAAAAGAAAAAGACGATAATTTGAAATACTAGGTTATCTTAATTTTTCCAACATGAGTAGAGCTCAATTAGTTAAACTTTAAAGTATATATCTAGGTATATTATTTGAATGTTCGAACCTCTACCCCACGTGTTGTTGACCTAAAAATTAAAGTTCTCTTATTTCTCTCAAGCCGTAAATTCAACAATATAATGAAGAATTTCGCCTGCCAAATAACCCAATCTCTTTCTGCTGTAAGGGGAATTTGCGAGTACCTCCCCCATGTCCCTACAACCTCTGGGAGGCAGATTAACTCCAAATTTATACAAGAATTTGCTTCATAGTTTCAGTGTAAAGTGGAAAATTTAAGGCACGTGATTAAGTTCCTCTGTATACCTCTTAAACACACGTCACACTCCGGCATTGGAGACATAAAACCATGGATGAAAATCTTTGAATTAAGTCACAGTGTTTGTCCTTCCCGAAGAAATCAACCAGGCAAATAAAGTAATCTTCTTTGGATTCTCCCAGATCATGGAGAAGAAAGGGGGACAAATTGATCTCCATGAGACACTAAAGGGGTAGAACTTACTAGAGAACATGCTTGAAGGCTTGAGAGTTCATTTACAAAAACAATCTAACGTTGGGGATAGGCAACCCCTTGTAACTACAAAAGAGATTAGCCAAATCTTAAGATCATGATCATTAAGGGGTGTTATAAAATGAAAATCATAATCACGAGGGAGGGTAGAAGAACTATCATGAGGATTAAAGATTAACGAGGTTGTGGAAAATAACTTTGAGAGGGTTATTACCGATCCTAAAATCCTCCCAGAAACTAACATGAGCCCTGTTTCTCATGGAAATTTCAATGAAATTGTTCAAGAACGGGATTGATGAAATACTGCTAGAAAGTACCTTCAATATGAAACTGATATCTTTAACTTTGGAGACTGTTAACGTTCTAGATCACACGTTTCAACAATTGATTGACAGTGGCACGAAATACAGGTTCATTTGTGTTCTTTAAGTTAACCAACTACTGAATTACAAAGAACCTGAATCATTGCACCAATCAATTGCGAGGCGATTTGTGCATCAGTGAAGTTAATGAGCTGTTGATGTTTGACATTTATCTCCAACCATGTCCTCCTATTTTCAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCTAGGAAGCGTGCAGAGGATATAGCCACAGGAGCTGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATACCCAATAT

mRNA sequence

ATGGGGGCAGAAGAAACAGCAGCCGCTATGGAAAAAGAGAAGCTCACATCTCATAACCCAAGGACGAATCCCATCACGGAGGCTCAGTTCCTATCCTGGAAGCGGCAGAAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCTAGGAAGCGTGCAGAGGATATAGCCACAGGAGCTGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATACCCAATAT

Coding sequence (CDS)

ATGGGGGCAGAAGAAACAGCAGCCGCTATGGAAAAAGAGAAGCTCACATCTCATAACCCAAGGACGAATCCCATCACGGAGGCTCAGTTCCTATCCTGGAAGCGGCAGAAGGATGCTGAGGCATCTGCTAAAAGAGATGAAACAGCTAGGAAGCGTGCAGAGGATATAGCCACAGGAGCTGTGCAAATGAATGGGCGAGAGCTTTTCTTGCACCAACCATGGGTTTTTGATAATACCCAATAT

Protein sequence

MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGAVQMNGRELFLHQPWVFDNTQY

Homology

[Close]

BLAST of MS018594 vs. NCBI nr
Match: XP_022141384.1 (zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 4.3e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE AAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of MS018594 vs. NCBI nr
Match: XP_022990599.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023545022.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6602051.1 hypothetical protein SDJN03_07284, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032745.1 hypothetical protein SDJN02_06795 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 7.9e-30
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE  AA+E+EKL SH+P  NPITEAQFLSWKR KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEE--AAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of MS018594 vs. NCBI nr
Match: XP_022963450.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE  A +E+EKL+SH+P  NPITEAQFLSWKR KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEE--AVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of MS018594 vs. NCBI nr
Match: XP_022939418.1 (zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_023549915.1 zinc finger CCCH domain-containing protein 15 homolog [Cucurbita pepo subsp. pepo] >KAG6579014.1 hypothetical protein SDJN03_23462, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE  AAME+EKL S NPRT PITE QFLSWKRQKDAEASAKRDETARKRA+DIA+GA
Sbjct: 1  MGAEE--AAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of MS018594 vs. NCBI nr
Match: XP_038906768.1 (zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAE    A E+EK  SHNPRT PITEAQFLSWKRQKDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAE---GATEQEKCASHNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 78

[Close]

BLAST of MS018594 vs. ExPASy TrEMBL
Match: A0A6J1CIH3 (zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=3673 GN=LOC111011797 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE AAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA
Sbjct: 1  MGAEEAAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 81

[Close]

BLAST of MS018594 vs. ExPASy TrEMBL
Match: A0A6J1JSG7 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=3661 GN=LOC111487435 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.8e-30
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE  AA+E+EKL SH+P  NPITEAQFLSWKR KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEE--AAVEQEKLASHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of MS018594 vs. ExPASy TrEMBL
Match: A0A6J1HI11 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463754 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 6.5e-30
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE  A +E+EKL+SH+P  NPITEAQFLSWKR KDAEASAKRDETARKRAEDIA+GA
Sbjct: 1  MGAEE--AVVEREKLSSHDPSANPITEAQFLSWKRHKDAEASAKRDETARKRAEDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDNTQY
Sbjct: 61 VQMNGRELFLHQPWVFDNTQY 79

[Close]

BLAST of MS018594 vs. ExPASy TrEMBL
Match: A0A6J1FLL2 (zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3662 GN=LOC111445336 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.5e-30
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MGAEE  AAME+EKL S NPRT PITE QFLSWKRQKDAEASAKRDETARKRA+DIA+GA
Sbjct: 1  MGAEE--AAMEQEKLASRNPRTIPITETQFLSWKRQKDAEASAKRDETARKRADDIASGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of MS018594 vs. ExPASy TrEMBL
Match: A0A1S3CCP9 (zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499290 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.5e-29
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MGAEETAAAMEKEKLTSHNPRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGA 60
          MG EE  AAME+EKL+ +NPRT PITEAQFLSWKRQKDAEASAKRDETARKRAEDIA GA
Sbjct: 1  MGDEE--AAMEQEKLSCNNPRTVPITEAQFLSWKRQKDAEASAKRDETARKRAEDIALGA 60

Query: 61 VQMNGRELFLHQPWVFDNTQY 82
          VQMNGRELFLHQPWVFDN+QY
Sbjct: 61 VQMNGRELFLHQPWVFDNSQY 79

[Close]

BLAST of MS018594 vs. TAIR 10
Match: AT1G22140.1 (unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-17
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 20 PRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATGAVQMNGRELFLHQPWVFDNT 79
          P    I++ QFL+WKRQKDAE  AK+ E ARKR EDIA+G V MNGRELFLH+PWVFD+T
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASGRVPMNGRELFLHEPWVFDDT 70

Query: 80 QY 82
           +
Sbjct: 71 HH 72

[Close]

BLAST of MS018594 vs. TAIR 10
Match: AT1G22140.2 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 6.5e-06
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 20 PRTNPITEAQFLSWKRQKDAEASAKRDETARKRAEDIATG 60
          P    I++ QFL+WKRQKDAE  AK+ E ARKR EDIA+G
Sbjct: 11 PTQISISKDQFLAWKRQKDAELLAKQAEAARKRQEDIASG 50

The following BLAST results are available for this feature:

BLAST of MS018594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141384.1	4.3e-36	98.77	zinc finger CCCH domain-containing protein 15 homolog [Momordica charantia]	[more]
XP_022990599.1	7.9e-30	87.65	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita maxima] >XP_023...	[more]
XP_022963450.1	1.3e-29	86.42	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata]	[more]
XP_022939418.1	1.8e-29	87.65	zinc finger CCCH domain-containing protein 15 homolog [Cucurbita moschata] >XP_0...	[more]
XP_038906768.1	3.0e-29	87.65	zinc finger CCCH domain-containing protein 15 homolog [Benincasa hispida]	[more]

BLAST of MS018594 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIH3	2.1e-36	98.77	zinc finger CCCH domain-containing protein 15 homolog OS=Momordica charantia OX=...	[more]
A0A6J1JSG7	3.8e-30	87.65	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita maxima OX=366...	[more]
A0A6J1HI11	6.5e-30	86.42	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3...	[more]
A0A6J1FLL2	8.5e-30	87.65	zinc finger CCCH domain-containing protein 15 homolog OS=Cucurbita moschata OX=3...	[more]
A0A1S3CCP9	2.5e-29	87.65	zinc finger CCCH domain-containing protein 15 homolog isoform X2 OS=Cucumis melo...	[more]

BLAST of MS018594 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22140.1	2.8e-17	66.13	unknown protein; Has 40 Blast hits to 40 proteins in 14 species: Archae - 0; Bac...	[more]
AT1G22140.2	6.5e-06	62.50	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.20.400.10		coord: 4..73 e-value: 4.2E-6 score: 28.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	PANTHER	PTHR12681	ZINC FINGER-CONTAINING PROTEIN P48ZNF	coord: 1..81
None	No IPR available	PANTHER	PTHR12681:SF10	OS03G0385301 PROTEIN	coord: 1..81
IPR032378	ZC3H15/TMA46 family, C-terminal	PFAM	PF16543	DFRP_C	coord: 11..77 e-value: 3.5E-8 score: 33.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018594.1	MS018594.1	mRNA