MS018577 (gene) Bitter gourd (TR) v1

Overview
NameMS018577
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold313: 33661 .. 34316 (+)
RNA-Seq ExpressionMS018577
SyntenyMS018577
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCAAAATCAAAAGATGGAGGGCCACAAATCAGACACCAACAAAACGAATCCCCGAAAGGATGGAGTAATCATCACTGTGTACGTTGAATCCCCCAAATCGCATAACAATTCCCATCAAAACAGGGATGCCAATGCCCTCAACAAAATTAACCCCAAATCCAGAGGCAGAGGCTACGACCGCCGGGCCCAGCTCCTCGCATACTCTCGCGACCTCAGAAACCTCGATTCTCCTCTCAAACCCAAGGTCTGTCTCCGTCTCTGCCTCTGTGTTGCTTCGTTTTAATTTCATTTTTGAGTAGGAATTGAAAAGATCGATAAATTAAAATGCTGCGTACGTACAGAAATGGAAACTGAAGGTGAGATCGGAGACACGGTATGAACGGGTGGGGATGGGGAGAGAGGAGAGAGCAGAGGTGGTGGATCAGCGATGCCGCCCCAAATGCTTCTGCTTCCAAAGCAGGACAAAGAAAGCCACTGGGAAATCGGGTTCTTCCATATTGGTAAATTTCCGGCCGGGAAATGAATACCCACTTGATCAGTTTTTTTGTTTTGTTTTTGACGAGTTGGTTAATGGGTGTTGCGTTTGTGTTGCAGATGAAAATGAAGAGTTTGTTGAGAGAGTTATCAAAGGGGTGTAAACGCAGGAGTGATGAT

mRNA sequence

CAGCAAAATCAAAAGATGGAGGGCCACAAATCAGACACCAACAAAACGAATCCCCGAAAGGATGGAGTAATCATCACTGTGTACGTTGAATCCCCCAAATCGCATAACAATTCCCATCAAAACAGGGATGCCAATGCCCTCAACAAAATTAACCCCAAATCCAGAGGCAGAGGCTACGACCGCCGGGCCCAGCTCCTCGCATACTCTCGCGACCTCAGAAACCTCGATTCTCCTCTCAAACCCAAGAAATGGAAACTGAAGGTGAGATCGGAGACACGGTATGAACGGGTGGGGATGGGGAGAGAGGAGAGAGCAGAGGTGGTGGATCAGCGATGCCGCCCCAAATGCTTCTGCTTCCAAAGCAGGACAAAGAAAGCCACTGGGAAATCGGGTTCTTCCATATTGATGAAAATGAAGAGTTTGTTGAGAGAGTTATCAAAGGGGTGTAAACGCAGGAGTGATGAT

Coding sequence (CDS)

CAGCAAAATCAAAAGATGGAGGGCCACAAATCAGACACCAACAAAACGAATCCCCGAAAGGATGGAGTAATCATCACTGTGTACGTTGAATCCCCCAAATCGCATAACAATTCCCATCAAAACAGGGATGCCAATGCCCTCAACAAAATTAACCCCAAATCCAGAGGCAGAGGCTACGACCGCCGGGCCCAGCTCCTCGCATACTCTCGCGACCTCAGAAACCTCGATTCTCCTCTCAAACCCAAGAAATGGAAACTGAAGGTGAGATCGGAGACACGGTATGAACGGGTGGGGATGGGGAGAGAGGAGAGAGCAGAGGTGGTGGATCAGCGATGCCGCCCCAAATGCTTCTGCTTCCAAAGCAGGACAAAGAAAGCCACTGGGAAATCGGGTTCTTCCATATTGATGAAAATGAAGAGTTTGTTGAGAGAGTTATCAAAGGGGTGTAAACGCAGGAGTGATGAT

Protein sequence

QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYDRRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGREERAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD
Homology
BLAST of MS018577 vs. NCBI nr
Match: XP_022141611.1 (uncharacterized protein LOC111011926 [Momordica charantia])

HSP 1 Score: 305.4 bits (781), Expect = 2.7e-79
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0

Query: 1   QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYD 60
           QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYD
Sbjct: 48  QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYD 107

Query: 61  RRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGREERAEVVDQRCRPKCFCFQ 120
           RRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGRE+RAEVVDQRCRPKCFCFQ
Sbjct: 108 RRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGREDRAEVVDQRCRPKCFCFQ 167

Query: 121 SRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD 156
           SRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD
Sbjct: 168 SRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD 202

BLAST of MS018577 vs. NCBI nr
Match: XP_038874461.1 (uncharacterized protein LOC120067113 [Benincasa hispida])

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-30
Identity = 97/177 (54.80%), Postives = 114/177 (64.41%), Query Frame = 0

Query: 3   NQKMEGHKSDTNKTNPRKDGVIITVYVESPK-SHNNSHQ-----NRDANALNKINPKS-R 62
           +QKM+ H ++ N+T P+K GVIITVYVESPK   NNSH+     + + N  N   PK+  
Sbjct: 54  SQKMQTH-TNNNQTIPQKQGVIITVYVESPKLQDNNSHKPPIIPHNNINNPNSALPKTPN 113

Query: 63  GRGYDRRAQLLAYSRDLRNLDSPL------KPKKWKLKVRSET---------------RY 122
             GYDRRAQLLAYSR LRN +S L      + KKWK +VRSE                RY
Sbjct: 114 STGYDRRAQLLAYSRHLRNQNSSLSQSSKTESKKWKWRVRSEAPAVRRMPSRRALQRWRY 173

Query: 123 ERVGMGREERAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 152
           ERVGM REE  EVVDQ CRPKCF  +S +KK+T KSGSSI  K+KSLL ELS GCKR
Sbjct: 174 ERVGMMREETTEVVDQPCRPKCFGGKS-SKKSTVKSGSSIFRKLKSLLGELSNGCKR 228

BLAST of MS018577 vs. NCBI nr
Match: XP_008460454.1 (PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-30
Identity = 98/184 (53.26%), Postives = 114/184 (61.96%), Query Frame = 0

Query: 2   QNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHN-NSHQNR--DANALNKINPK----- 61
           Q+++M+ H ++  +T P+K  VIITVYVESPK  N NSH+ +    N  N INPK     
Sbjct: 39  QSREMQSH-TNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPK 98

Query: 62  -SRGRGYDRRAQLLAYSRDLRNLDS------PLKPKKWKLKVRSET-------------- 121
                GYDRRAQLLAYSR LRN+ S        K KKWK KVRSE               
Sbjct: 99  TPNSTGYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKKWKWKVRSEAPTVRRMPSRRALQR 158

Query: 122 -RYERVGMGREERAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 156
            RYERVGM REER EVVDQ CRPKC   +S  KK+T +SGSSI  K+KSLL ELSKGCKR
Sbjct: 159 WRYERVGMMREERTEVVDQPCRPKCLGGRS-NKKSTSRSGSSIFRKLKSLLGELSKGCKR 218

BLAST of MS018577 vs. NCBI nr
Match: XP_004140323.1 (uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical protein Csa_008362 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-28
Identity = 91/184 (49.46%), Postives = 111/184 (60.33%), Query Frame = 0

Query: 2   QNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNS---------HQNRDANALNKINP 61
           Q+++M+ H ++  +T P+K  VIITVYVESPK  N++         + N ++N    +  
Sbjct: 2   QSREMQSH-TNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRK 61

Query: 62  KSRGRGYDRRAQLLAYSRDLRNLDS------PLKPKKWKLKVRSET-------------- 121
                GYDRRAQLLAYSR LRN+ S        K KKWK KVRSE               
Sbjct: 62  TPNSTGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQR 121

Query: 122 -RYERVGMGREERAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 156
            RYERVGM REER EVVDQ CRPKC   +S  KK+T +SGSSI  K+KSLL ELSKGCKR
Sbjct: 122 WRYERVGMMREERTEVVDQPCRPKCLGGRS-NKKSTSRSGSSIFRKLKSLLGELSKGCKR 181

BLAST of MS018577 vs. NCBI nr
Match: XP_023546181.1 (uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-25
Identity = 83/160 (51.88%), Postives = 103/160 (64.38%), Query Frame = 0

Query: 15  KTNPRKDGVIITVYVESP-KSHNNSHQNR---DANALNKINPKS-RGRGYDRRAQLLAYS 74
           K  P K+ VIITVYVESP K  N SHQN    + N+    +PK+ + RGYDRRA+LLAYS
Sbjct: 11  KAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYS 70

Query: 75  RDLRNLDS-----PLKPKKWKLKVRS-------------ETRYERVGMGREERAEVVDQR 134
           R+LRN+DS     P    KW++K  +             + RYERVGM REER EVV+QR
Sbjct: 71  RELRNVDSGTTHLPKTKSKWRVKSETAAVRRIPSKRGLRQGRYERVGMTREERTEVVEQR 130

Query: 135 CRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 152
           C PK  CF    K+++G+ GSSIL K+KSL+  LSKGCKR
Sbjct: 131 CLPK--CFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKR 168

BLAST of MS018577 vs. ExPASy TrEMBL
Match: A0A6J1CJQ0 (uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011926 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.3e-79
Identity = 154/155 (99.35%), Postives = 155/155 (100.00%), Query Frame = 0

Query: 1   QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYD 60
           QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYD
Sbjct: 48  QQNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNSHQNRDANALNKINPKSRGRGYD 107

Query: 61  RRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGREERAEVVDQRCRPKCFCFQ 120
           RRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGRE+RAEVVDQRCRPKCFCFQ
Sbjct: 108 RRAQLLAYSRDLRNLDSPLKPKKWKLKVRSETRYERVGMGREDRAEVVDQRCRPKCFCFQ 167

Query: 121 SRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD 156
           SRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD
Sbjct: 168 SRTKKATGKSGSSILMKMKSLLRELSKGCKRRSDD 202

BLAST of MS018577 vs. ExPASy TrEMBL
Match: A0A1S3CDS3 (uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.3e-30
Identity = 98/184 (53.26%), Postives = 114/184 (61.96%), Query Frame = 0

Query: 2   QNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHN-NSHQNR--DANALNKINPK----- 61
           Q+++M+ H ++  +T P+K  VIITVYVESPK  N NSH+ +    N  N INPK     
Sbjct: 39  QSREMQSH-TNNYQTLPKKQEVIITVYVESPKLQNSNSHKTQIIPHNNNNHINPKPSLPK 98

Query: 62  -SRGRGYDRRAQLLAYSRDLRNLDS------PLKPKKWKLKVRSET-------------- 121
                GYDRRAQLLAYSR LRN+ S        K KKWK KVRSE               
Sbjct: 99  TPNSTGYDRRAQLLAYSRHLRNVHSSNTQSPQPKSKKWKWKVRSEAPTVRRMPSRRALQR 158

Query: 122 -RYERVGMGREERAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 156
            RYERVGM REER EVVDQ CRPKC   +S  KK+T +SGSSI  K+KSLL ELSKGCKR
Sbjct: 159 WRYERVGMMREERTEVVDQPCRPKCLGGRS-NKKSTSRSGSSIFRKLKSLLGELSKGCKR 218

BLAST of MS018577 vs. ExPASy TrEMBL
Match: A0A0A0KN34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.1e-29
Identity = 91/184 (49.46%), Postives = 111/184 (60.33%), Query Frame = 0

Query: 2   QNQKMEGHKSDTNKTNPRKDGVIITVYVESPKSHNNS---------HQNRDANALNKINP 61
           Q+++M+ H ++  +T P+K  VIITVYVESPK  N++         + N ++N    +  
Sbjct: 2   QSREMQSH-TNNYQTLPKKQEVIITVYVESPKLQNSNPHKTPIVPHNNNNNSNPKPSLRK 61

Query: 62  KSRGRGYDRRAQLLAYSRDLRNLDS------PLKPKKWKLKVRSET-------------- 121
                GYDRRAQLLAYSR LRN+ S        K KKWK KVRSE               
Sbjct: 62  TPNSTGYDRRAQLLAYSRHLRNVHSSNTQSPKPKSKKWKWKVRSEAPTVRRMPSRRALQR 121

Query: 122 -RYERVGMGREERAEVVDQRCRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 156
            RYERVGM REER EVVDQ CRPKC   +S  KK+T +SGSSI  K+KSLL ELSKGCKR
Sbjct: 122 WRYERVGMMREERTEVVDQPCRPKCLGGRS-NKKSTSRSGSSIFRKLKSLLGELSKGCKR 181

BLAST of MS018577 vs. ExPASy TrEMBL
Match: A0A6J1JSH9 (uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 86/160 (53.75%), Postives = 103/160 (64.38%), Query Frame = 0

Query: 15  KTNPRKDGVIITVYVESP-KSHNNSHQNR---DANALNKINPK-SRGRGYDRRAQLLAYS 74
           K  P K+ VIITVYVESP K  N SHQN    + N+     PK ++ RGYDRRA+LLAYS
Sbjct: 11  KAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAPPKATKSRGYDRRAELLAYS 70

Query: 75  RDLRNLDSP---LKPKKWKLKVRSET---------------RYERVGMGREERAEVVDQR 134
           R+LRN+DS    L   K K +V+SET               RYERVGM REER EVV+QR
Sbjct: 71  RELRNVDSATTHLPKTKSKWRVKSETAAVRRIPSRRGLRQGRYERVGMMREERTEVVEQR 130

Query: 135 CRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 152
           C PK  CF    K+++G+ GSSIL K+KSL+  LSKGCKR
Sbjct: 131 CLPK--CFNGDDKRSSGRLGSSILRKLKSLMGGLSKGCKR 168

BLAST of MS018577 vs. ExPASy TrEMBL
Match: A0A6J1HCQ4 (uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC111462789 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.2e-25
Identity = 85/160 (53.12%), Postives = 103/160 (64.38%), Query Frame = 0

Query: 15  KTNPRKDGVIITVYVESP-KSHNNSHQNR---DANALNKINPKS-RGRGYDRRAQLLAYS 74
           K  P K+ VIITVYVESP K  N SHQN    + N+    +PK+ + RGYDRRA+LLAYS
Sbjct: 11  KAIPPKERVIITVYVESPRKQSNKSHQNPISINKNSHPNAHPKAPKSRGYDRRAELLAYS 70

Query: 75  RDLRNLDSP---LKPKKWKLKVRSET---------------RYERVGMGREERAEVVDQR 134
           R+LRN+DS    L   K K +V+SET               RYERVGM REER EVV+QR
Sbjct: 71  RELRNVDSATTHLPKTKSKWRVKSETAAVRRLPSRRGLRQGRYERVGMMREERTEVVEQR 130

Query: 135 CRPKCFCFQSRTKKATGKSGSSILMKMKSLLRELSKGCKR 152
           C PK  CF    K+++G+ GSSIL K+KSL+  LS GCKR
Sbjct: 131 CLPK--CFNGDYKRSSGRLGSSILRKLKSLMGGLSMGCKR 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141611.12.7e-7999.35uncharacterized protein LOC111011926 [Momordica charantia][more]
XP_038874461.18.8e-3054.80uncharacterized protein LOC120067113 [Benincasa hispida][more]
XP_008460454.18.8e-3053.26PREDICTED: uncharacterized protein LOC103499268 [Cucumis melo][more]
XP_004140323.11.7e-2849.46uncharacterized protein LOC101218772 [Cucumis sativus] >KGN50983.1 hypothetical ... [more]
XP_023546181.11.0e-2551.88uncharacterized protein LOC111805357 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CJQ01.3e-7999.35uncharacterized protein LOC111011926 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A1S3CDS34.3e-3053.26uncharacterized protein LOC103499268 OS=Cucumis melo OX=3656 GN=LOC103499268 PE=... [more]
A0A0A0KN348.1e-2949.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G385350 PE=4 SV=1[more]
A0A6J1JSH91.1e-2553.75uncharacterized protein LOC111487148 OS=Cucurbita maxima OX=3661 GN=LOC111487148... [more]
A0A6J1HCQ43.2e-2553.13uncharacterized protein LOC111462789 OS=Cucurbita moschata OX=3662 GN=LOC1114627... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018577.1MS018577.1mRNA