MS018420 (gene) Bitter gourd (TR) v1

Overview
NameMS018420
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionZinc CCHC-type-like protein
Locationscaffold476: 147828 .. 148058 (+)
RNA-Seq ExpressionMS018420
SyntenyMS018420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGAAATGTTCTGGGAACTTTCGAAGATGTTGACTGTGATGAATCAGACTGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACGCTGGACATATCCAAACCCCTTAGAAGGGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTTGGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTGTTTTCATTGTGGCAGGGTGGACCATACTATCAAGGATTGT

mRNA sequence

TTAGGAAATGTTCTGGGAACTTTCGAAGATGTTGACTGTGATGAATCAGACTGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACGCTGGACATATCCAAACCCCTTAGAAGGGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTTGGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTGTTTTCATTGTGGCAGGGTGGACCATACTATCAAGGATTGT

Coding sequence (CDS)

TTAGGAAATGTTCTGGGAACTTTCGAAGATGTTGACTGTGATGAATCAGACTGCTGTTGGGGATCCAGTCTCAGAATTCGAGTAACGCTGGACATATCCAAACCCCTTAGAAGGGGAATCAAACTCAATCTTGATGGTCCTATGGGAGGTGTTTGGATCCCCATCCAATATGAGCGTCTTCCTGACTTCTGTTTTCATTGTGGCAGGGTGGACCATACTATCAAGGATTGT

Protein sequence

LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERLPDFCFHCGRVDHTIKDC
Homology
BLAST of MS018420 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 4.1e-28
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN +G FEDV+ + ++ CWGS LR+RV  D+ KPL RGIKLNLDGPMGG WIPIQYERL
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 61  PDFCFHCGRVDHTIKDC 78
           PDF +HCGR+DH +KDC
Sbjct: 209 PDFRYHCGRLDHILKDC 225

BLAST of MS018420 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-27
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN +G F DVDC+E    WG+SLRIRV +DI+KPLRRGIK+N+DGPMGG WIPIQYERL
Sbjct: 148 LGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERL 207

Query: 61  PDFCFHCGRVDHTIKDC 78
           PDFC+ CG + H+  DC
Sbjct: 208 PDFCYFCGVIGHSSHDC 224

BLAST of MS018420 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN LG FE+ DCD+ +  WGS+LR+RV LDISKPLRRGIKLNLDGP+GG WIPIQYERL
Sbjct: 149 LGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERL 208

Query: 61  PDFCFHCG 69
           PDFC+HCG
Sbjct: 209 PDFCYHCG 216

BLAST of MS018420 vs. NCBI nr
Match: XP_028117212.1 (uncharacterized protein LOC114314884 [Camellia sinensis])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN LG F D++  +    WG +L IR+ ++I KPLRRG+KL L G    VWI +QYERL
Sbjct: 146 LGNTLGKFVDMEYGDGGIAWGRALHIRIEINIDKPLRRGLKLALGG-QEPVWITLQYERL 205

Query: 61  PDFCFHCGRVDHTIKDC 78
           P+FCFHCG + H++ DC
Sbjct: 206 PNFCFHCGLLGHSVHDC 221

BLAST of MS018420 vs. NCBI nr
Match: XP_038894015.1 (uncharacterized protein LOC120082783 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0

Query: 1  LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
          LGN +GTF +VD DE+D CW  SL IR+T+DI+ PL  G+K   +      WI I+YER+
Sbjct: 5  LGNSIGTFINVDFDENDNCWKPSLCIRITIDITNPLGHGLKFGYENSSSKDWIQIKYERV 64

Query: 61 PDFCFHCGRVDHTIKDC 78
          PDFC+ C  + H +K+C
Sbjct: 65 PDFCYDCDMIGHILKNC 81

BLAST of MS018420 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-28
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN +G FEDV+ + ++ CWGS LR+RV  D+ KPL RGIKLNLDGPMGG WIPIQYERL
Sbjct: 149 LGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERL 208

Query: 61  PDFCFHCGRVDHTIKDC 78
           PDF +HCGR+DH +KDC
Sbjct: 209 PDFRYHCGRLDHILKDC 225

BLAST of MS018420 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN +G F DVDC+E    WG+SLRIRV +DI+KPLRRGIK+N+DGPMGG WIPIQYERL
Sbjct: 148 LGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERL 207

Query: 61  PDFCFHCGRVDHTIKDC 78
           PDFC+ CG + H+  DC
Sbjct: 208 PDFCYFCGVIGHSSHDC 224

BLAST of MS018420 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           LGN LG FE+ DCD+ +  WGS+LR+RV LDISKPLRRGIKLNLDGP+GG WIPIQYERL
Sbjct: 149 LGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERL 208

Query: 61  PDFCFHCG 69
           PDFC+HCG
Sbjct: 209 PDFCYHCG 216

BLAST of MS018420 vs. ExPASy TrEMBL
Match: A0A6P9EID8 (uncharacterized protein LOC118348856 OS=Juglans regia OX=51240 GN=LOC118348856 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.0e-16
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDCCWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYERL 60
           +GN +G  E+VD ++S+  WG  LRIRV ++IS+PL RGI + L G  G VWI   YERL
Sbjct: 120 IGNKIGIVEEVDGEQSEVAWGEYLRIRVRVNISQPLMRGITVKL-GQFGSVWIRFAYERL 179

Query: 61  PDFCFHCGRVDHTIKDC 78
           P+FC+ CG++ H  KDC
Sbjct: 180 PNFCYMCGKLGHQQKDC 195

BLAST of MS018420 vs. ExPASy TrEMBL
Match: A0A2K3MPT1 (Cysteine desulfurase mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g015850 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.6e-16
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 1   LGNVLGTFEDVDCDESDC-CWGSSLRIRVTLDISKPLRRGIKLNLDGPMGGVWIPIQYER 60
           LGN+LGTFE++D    DC   G  LRIRV++D+ KPL+RG KL+  G    +W+  +YER
Sbjct: 140 LGNILGTFEEMDM--KDCNRMGKFLRIRVSMDLRKPLKRGSKLSFQGK--DIWVDYKYER 199

Query: 61  LPDFCFHCGRVDHTIKDC 78
           LP+FCF CGR+ H ++DC
Sbjct: 200 LPNFCFACGRIGHQMRDC 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132681.14.1e-2870.13uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022156185.13.5e-2768.83uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022158377.16.6e-2677.94uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028117212.11.9e-1753.25uncharacterized protein LOC114314884 [Camellia sinensis][more]
XP_038894015.11.6e-1649.35uncharacterized protein LOC120082783 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BSZ12.0e-2870.13uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DU551.7e-2768.83uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DX303.2e-2677.94uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6P9EID83.0e-1651.95uncharacterized protein LOC118348856 OS=Juglans regia OX=51240 GN=LOC118348856 P... [more]
A0A2K3MPT16.6e-1652.56Cysteine desulfurase mitochondrial-like OS=Trifolium pratense OX=57577 GN=L195_g... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 30..77
e-value: 8.8E-13
score: 47.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 64..77
score: 8.614303

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018420.1MS018420.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding