MS018402 (gene) Bitter gourd (TR) v1

Overview


Name	MS018402
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S19
Location	scaffold342: 684065 .. 685703 (+)
RNA-Seq Expression	MS018402
Synteny	MS018402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTGCTAAGACCGTCAAGGATGTATCTCCTCACGAGTTCGTCAAGGCCTATGCCGCTCATCTCAAGCGATCTGGAAAGGTATCGGGTTTTTCTTATATACTCTGTTTTTTTTTTCTTTCTGATTTTCTGGACGAGAGAACTAGGTTGTCGATTGAAGAGAGTATCCTGTGATGTTGATTTCGAGAACGGAGTGAATGCTAAATTTGAGTTTCATCTGGGATGGTTCTGTTGTGGGGTGTGCTTGTTTCTGTGTTGTTTGCCTTCTTTATCGGCTTCTCCAGGCCTCCATTTTACTTAGTTTTTTTTATTCTTCCTAATAAAACAAATAGTTTGTAGGTTTTAGGGCGTAGACGTTTTGATCGATCTGCTCCTGCTTTTGGACTGTCCTCTCAATGTTTTGAATTTCCCTGTTCCGTTGATTAAATTTGTTGGTGGGAGTACTATATTCTCTTATTTTTATTTACTGGCTTTTTGCACCTCATGAGGTGGTGTGAAATATTTTACTTTCTTGCACTCATACTTGCTCCGGAGTGTTTTTTGGATCTATTAAAGACACGTTCTTGGTGTAAAGAATTTTGTAATGTTCAATAGAGCTTTTGAGTTTCTGGGATCCAAGCGAGTATAAATGATTTTTTGGCCATATGGAAAAATATTTTGTAATCATAAATGGCCCGTGGTTTAGCATCCCCTGCTGTTGTAATATTATTAGACTATCTAGAATGATTCCTATTAAAAGAGGAACAAATTAGAAGACCTTTTGGAATCTCCATAGTAAGAATTATATATTTTTTGAATTCCATTTCTATGACAATGGTTTTAATAGGCATGCTGTTGTAACTTAATCAAAATATTCCCATTAAAAAAATTGGGTATGAATTTGTACATTATATGTTCCTTGTTTACGATAAGTTTAACCTGTAACGGCTATTAGATTTATTTAACCAATTAATCAATTATGATTTGCAATATATGTGGTTTTAAATTGCTATTCTTTGCATAAACCATTGCCGAGCAGGTTGAACTCCCACCATGGACAGATATAGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTATGATCCTGATTGGTATTACGTGAGAGCTGGTTAGTCCCCTACTTTCCTCTTTTTGATTTCATATATTCATATGATATAAATAAAACAAACTTAAATTAATTACTGCCATTATTTGTGGTCTGTTTGTGCTGCTCTGTTGATTACTTTGTCAAACTTTATTAGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGGGAGCATTTAAGCGTATTTATGGTGGAAGCCAGAGGAATGGAAGTCGCCCACCACACTTCTGCAAAAGCAGCGGTGCTATTGCCCGTCACATTTTGCAACAATTGCAGGAGATGAACATTGTTGATGTTGACCCGAAGGGGTGAGTTCAAGATTCTAATAGTTAGCTTAGTTATAACTTCTCTGTTTCCTGTCTTTGATTCCACCATATGCTTTGTGTTTTGCTCTGATTTCAAATCATTTGTAACCAATGCTATATTGTCCATTGATATTCTTTTGCAGTGGAAGGAGAATCACTTCAAGCGGTCGACGGGATCTCGATCAAGTCGCTGGACGGATTGTTGTTGCCCCG

mRNA sequence

ATGGCTACTGCTAAGACCGTCAAGGATGTATCTCCTCACGAGTTCGTCAAGGCCTATGCCGCTCATCTCAAGCGATCTGGAAAGGTTGAACTCCCACCATGGACAGATATAGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGGGAGCATTTAAGCGTATTTATGGTGGAAGCCAGAGGAATGGAAGTCGCCCACCACACTTCTGCAAAAGCAGCGGTGCTATTGCCCGTCACATTTTGCAACAATTGCAGGAGATGAACATTGTTGATGTTGACCCGAAGGGTGGAAGGAGAATCACTTCAAGCGGTCGACGGGATCTCGATCAAGTCGCTGGACGGATTGTTGTTGCCCCG

Coding sequence (CDS)

ATGGCTACTGCTAAGACCGTCAAGGATGTATCTCCTCACGAGTTCGTCAAGGCCTATGCCGCTCATCTCAAGCGATCTGGAAAGGTTGAACTCCCACCATGGACAGATATAGTGAAGACTGCAAGATTCAAAGAGCTTGCTCCTTATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTGGGAGCATTTAAGCGTATTTATGGTGGAAGCCAGAGGAATGGAAGTCGCCCACCACACTTCTGCAAAAGCAGCGGTGCTATTGCCCGTCACATTTTGCAACAATTGCAGGAGATGAACATTGTTGATGTTGACCCGAAGGGTGGAAGGAGAATCACTTCAAGCGGTCGACGGGATCTCGATCAAGTCGCTGGACGGATTGTTGTTGCCCCG

Protein sequence

MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Homology

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BLAST of MS018402 vs. NCBI nr
Match: XP_022150295.1 (40S ribosomal protein S19-3-like [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHIL QLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILHQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

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BLAST of MS018402 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 4.9e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. NCBI nr
Match: XP_022134553.1 (40S ribosomal protein S19-3 [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 4.9e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVD KG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

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BLAST of MS018402 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

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BLAST of MS018402 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-69
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

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BLAST of MS018402 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.4e-69
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of MS018402 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.8e-68
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]

BLAST of MS018402 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-64
Identity = 115/140 (82.14%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 2   ATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TA+TVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG QRNGSRPPHFCKSSGAI+R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

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BLAST of MS018402 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-46
Identity = 78/134 (58.21%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFCK++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]

BLAST of MS018402 vs. ExPASy TrEMBL
Match: A0A6J1D839 (40S ribosomal protein S19-3-like OS=Momordica charantia OX=3673 GN=LOC111018495 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHIL QLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILHQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. ExPASy TrEMBL
Match: A0A6J1C2B0 (40S ribosomal protein S19-3 OS=Momordica charantia OX=3673 GN=LOC111006771 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVD KG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.3e-75
Identity = 140/143 (97.90%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGS+RNGSRPPHFC+SSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of MS018402 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-70
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of MS018402 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-70
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of MS018402 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-69
Identity = 121/139 (87.05%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT KTVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:

BLAST of MS018402 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150295.1	2.2e-75	99.30	40S ribosomal protein S19-3-like [Momordica charantia]	[more]
XP_022923365.1	4.9e-75	98.60	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso...	[more]
XP_022134553.1	4.9e-75	99.30	40S ribosomal protein S19-3 [Momordica charantia]	[more]
KAG6593129.1	1.1e-74	97.90	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022954406.1	1.1e-74	97.90	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]

BLAST of MS018402 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNP8	1.9e-69	86.62	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9SGA6	2.4e-69	85.31	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9LF30	7.8e-68	87.05	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	1.4e-64	82.14	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	3.8e-46	58.21	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of MS018402 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D839	1.1e-75	99.30	40S ribosomal protein S19-3-like OS=Momordica charantia OX=3673 GN=LOC111018495 ...	[more]
A0A6J1JTL0	2.4e-75	98.60	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=...	[more]
A0A6J1C2B0	2.4e-75	99.30	40S ribosomal protein S19-3 OS=Momordica charantia OX=3673 GN=LOC111006771 PE=3 ...	[more]
A0A6J1EBL3	2.4e-75	98.60	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P...	[more]
A0A6J1JTW8	5.3e-75	97.90	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]

BLAST of MS018402 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61170.1	1.3e-70	86.62	Ribosomal protein S19e family protein	[more]
AT3G02080.1	1.7e-70	85.31	Ribosomal protein S19e family protein	[more]
AT5G15520.1	5.6e-69	87.05	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 6..142 e-value: 4.7E-86 score: 301.9
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 6..140 e-value: 1.3E-56 score: 190.1
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 3..142
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..142 e-value: 6.6E-72 score: 242.5
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 3..142
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 90..109
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018402.1	MS018402.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome