MS018396 (gene) Bitter gourd (TR) v1

Overview


Name	MS018396
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S19
Location	scaffold342: 633920 .. 634012 (+)
RNA-Seq Expression	MS018396
Synteny	MS018396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTCGAACTCCCACCATGGACAGATATAGTGAAGACTGCGAGATTCAAAGAGCTTGCCCCTTATGATCCTGATTGGTATTACGTGAGAGCT

mRNA sequence

CAGGTCGAACTCCCACCATGGACAGATATAGTGAAGACTGCGAGATTCAAAGAGCTTGCCCCTTATGATCCTGATTGGTATTACGTGAGAGCT

Coding sequence (CDS)

CAGGTCGAACTCCCACCATGGACAGATATAGTGAAGACTGCGAGATTCAAAGAGCTTGCCCCTTATGATCCTGATTGGTATTACGTGAGAGCT

Protein sequence

QVELPPWTDIVKTARFKELAPYDPDWYYVRA

Homology

[Close]

BLAST of MS018396 vs. NCBI nr
Match: XP_023513679.1 (40S ribosomal protein S19-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.2 bits (178), Expect = 4.5e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          QVELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 17 QVELPPWTDIVKTARFKELAPYDPDWYYVRA 47

[Close]

BLAST of MS018396 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
           +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 569 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 599

[Close]

BLAST of MS018396 vs. NCBI nr
Match: RXH89655.1 (hypothetical protein DVH24_032012 [Malus domestica])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-10
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP WTDIVKT R KELAPYDPDWYY+RA
Sbjct: 28 KIELPLWTDIVKTGRLKELAPYDPDWYYIRA 58

[Close]

BLAST of MS018396 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.0e-10
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP WTDIVKT + KELAPYDPDWYY+RA
Sbjct: 28 KIELPTWTDIVKTGKLKELAPYDPDWYYIRA 58

[Close]

BLAST of MS018396 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-09
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP WTDIVKT + KELAPYDPDWYY+RA
Sbjct: 28 KIELPLWTDIVKTGKLKELAPYDPDWYYIRA 58

[Close]

BLAST of MS018396 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.4e-09
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP W DIVKTARFKEL PYDPDWYY RA
Sbjct: 30 KMELPEWVDIVKTARFKELPPYDPDWYYTRA 60

[Close]

BLAST of MS018396 vs. ExPASy Swiss-Prot
Match: Q8T5Z4 (40S ribosomal protein S19 OS=Branchiostoma belcheri OX=7741 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-07
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +++LP W D+VKTA  KELAPYDPDW+Y+RA
Sbjct: 28 KLKLPEWVDLVKTAPHKELAPYDPDWFYLRA 58

[Close]

BLAST of MS018396 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. ExPASy TrEMBL
Match: A0A498J4M9 (F-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_032012 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. ExPASy TrEMBL
Match: A0A6P4A1R8 (40S ribosomal protein S19-3 OS=Ziziphus jujuba OX=326968 GN=LOC107415888 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. ExPASy TrEMBL
Match: A0A6J1JX06 (40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-10
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          +VELPPWTDIVKTARFKELAPYDPDWYYVRA
Sbjct: 28 KVELPPWTDIVKTARFKELAPYDPDWYYVRA 58

[Close]

BLAST of MS018396 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-11
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP WTDIVKT R KELAPYDPDWYY+RA
Sbjct: 28 KIELPLWTDIVKTGRLKELAPYDPDWYYIRA 58

[Close]

BLAST of MS018396 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-11
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP WTDIVKT + KELAPYDPDWYY+RA
Sbjct: 28 KIELPTWTDIVKTGKLKELAPYDPDWYYIRA 58

[Close]

BLAST of MS018396 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 62.0 bits (149), Expect = 9.7e-11
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  QVELPPWTDIVKTARFKELAPYDPDWYYVRA 32
          ++ELP WTDIVKT + KELAPYDPDWYY+RA
Sbjct: 28 KIELPLWTDIVKTGKLKELAPYDPDWYYIRA 58

The following BLAST results are available for this feature:

BLAST of MS018396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513679.1	4.5e-10	100.00	40S ribosomal protein S19-1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593129.1	1.3e-09	96.77	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
RXH89655.1	1.3e-09	96.77	hypothetical protein DVH24_032012 [Malus domestica]	[more]
XP_022954406.1	1.3e-09	96.77	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_022938991.1	1.3e-09	96.77	40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p...	[more]

BLAST of MS018396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF30	6.1e-10	80.65	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
Q9SGA6	8.0e-10	77.42	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9FNP8	1.4e-09	77.42	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
P40978	1.4e-09	80.65	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q8T5Z4	1.7e-07	67.74	40S ribosomal protein S19 OS=Branchiostoma belcheri OX=7741 GN=RPS19 PE=2 SV=1	[more]

BLAST of MS018396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTW8	6.4e-10	96.77	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]
A0A6J1H7M6	6.4e-10	96.77	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P...	[more]
A0A498J4M9	6.4e-10	96.77	F-box domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_032012 PE=3 ...	[more]
A0A6P4A1R8	6.4e-10	96.77	40S ribosomal protein S19-3 OS=Ziziphus jujuba OX=326968 GN=LOC107415888 PE=3 SV...	[more]
A0A6J1JX06	6.4e-10	96.77	40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=...	[more]

BLAST of MS018396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15520.1	4.4e-11	80.65	Ribosomal protein S19e family protein	[more]
AT3G02080.1	5.7e-11	77.42	Ribosomal protein S19e family protein	[more]
AT5G61170.1	9.7e-11	77.42	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 1..31 e-value: 2.0E-11 score: 43.7
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 2..31
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..31 e-value: 6.8E-14 score: 53.7
None	No IPR available	PANTHER	PTHR11710:SF18	40S RIBOSOMAL PROTEIN S19-3	coord: 2..31
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 2..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018396.1	MS018396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome