MS018198 (gene) Bitter gourd (TR) v1

Overview
NameMS018198
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box domain-containing protein
Locationscaffold56: 469061 .. 469399 (-)
RNA-Seq ExpressionMS018198
SyntenyMS018198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTGTTCTATTGGAGTCTTTAATGGTACTCTTTGTTTATCTACGTGCATCCTAAATTTAGAGTACCATGTGTGGAAGATGGGAGAAGATTTTTCATGGACTAAAGCATTTGATGTGTTCATACCAACACAATGTTTGCATCAATCATTTCACTTTCAACTTATTGGAGCCGGTGAAGATGGGGAGATCTTGTGTCTTCTTGGTGGACTCTATTTTATCTTGTATAACTCTAGGACGGAGAGGATGAAGCTATTGACATATCAACATTTTAACATTAAGAAAGTTCATCATATTGACTCCTTTGATTTTAATTCTCTTTACAAGATTTTAGGAGTGAGT

mRNA sequence

TCTTGTTCTATTGGAGTCTTTAATGGTACTCTTTGTTTATCTACGTGCATCCTAAATTTAGAGTACCATGTGTGGAAGATGGGAGAAGATTTTTCATGGACTAAAGCATTTGATGTGTTCATACCAACACAATGTTTGCATCAATCATTTCACTTTCAACTTATTGGAGCCGGTGAAGATGGGGAGATCTTGTGTCTTCTTGGTGGACTCTATTTTATCTTGTATAACTCTAGGACGGAGAGGATGAAGCTATTGACATATCAACATTTTAACATTAAGAAAGTTCATCATATTGACTCCTTTGATTTTAATTCTCTTTACAAGATTTTAGGAGTGAGT

Coding sequence (CDS)

TCTTGTTCTATTGGAGTCTTTAATGGTACTCTTTGTTTATCTACGTGCATCCTAAATTTAGAGTACCATGTGTGGAAGATGGGAGAAGATTTTTCATGGACTAAAGCATTTGATGTGTTCATACCAACACAATGTTTGCATCAATCATTTCACTTTCAACTTATTGGAGCCGGTGAAGATGGGGAGATCTTGTGTCTTCTTGGTGGACTCTATTTTATCTTGTATAACTCTAGGACGGAGAGGATGAAGCTATTGACATATCAACATTTTAACATTAAGAAAGTTCATCATATTGACTCCTTTGATTTTAATTCTCTTTACAAGATTTTAGGAGTGAGT

Protein sequence

SCSIGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIGAGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVHHIDSFDFNSLYKILGVS
Homology
BLAST of MS018198 vs. NCBI nr
Match: XP_022143297.1 (F-box/kelch-repeat protein At3g06240-like [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 2.7e-28
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0

Query: 2   CSIGVFNGTLCLSTCILNLE-YHVWKMGEDFSWTKAFDVFIPTQCLHQ----SFHFQLIG 61
           CSIGVFNG+L L+        YHVWKM EDFSWTKAFDV +P   +H         QLI 
Sbjct: 260 CSIGVFNGSLYLTLAQGRYHAYHVWKMEEDFSWTKAFDVLLPKIYVHHRRLYDSQLQLIR 319

Query: 62  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVHHIDSFDFNSLYKIL 111
           A +DG+ILCL+ GL  ILYNS+T+RM+ LTYQH NIKKVH IDSF+F+SL+KIL
Sbjct: 320 ACDDGKILCLISGLDLILYNSKTQRMESLTYQHLNIKKVHRIDSFNFDSLHKIL 373

BLAST of MS018198 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 62/117 (52.99%), Postives = 74/117 (63.25%), Query Frame = 0

Query: 4   IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIG 63
           IGV+N TL L+ C  + EYHVWKM EDFSW K F + +P    H         +  QLI 
Sbjct: 264 IGVYNDTLYLTLCCGDFEYHVWKMEEDFSWIKEFVLALPENVHHSLPRHHPIGYCLQLIK 323

Query: 64  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
           A EDG ILCL  GLY ILY+ +TE  +LLT Q F IKK   V+ IDSF+FNSL+ IL
Sbjct: 324 ACEDGNILCLCAGLYLILYDPKTETTELLTDQDFEIKKHMWVYQIDSFNFNSLHNIL 380

BLAST of MS018198 vs. NCBI nr
Match: XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 4   IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIG 63
           +GV+NGTL L+ C  + +YHVWKM EDFSW+K F + +P   LH         ++ QL+ 
Sbjct: 263 VGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLALPENILHSLHRHHPIGYYLQLVK 322

Query: 64  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
             EDG ILCL  G+  I+Y+ +T++M++LT Q F IK+    H I+SF FNSL+  L
Sbjct: 323 FCEDGSILCLCAGILLIVYDPKTQQMEILTDQDFEIKEGMWFHQIESFSFNSLHNTL 379

BLAST of MS018198 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 3.9e-19
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 4   IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ------SFHFQLIGA 63
           I V+NGTL L+ C  + +YH WKM EDFSW+K F + +P    H        ++ QLI  
Sbjct: 264 IAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFVLALPENVHHSLRHHPIGYYLQLIKF 323

Query: 64  GEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
            EDG ILCL  G+  ILY+  T+ +++LT Q F IK+   VH I+SF FNSL+ IL
Sbjct: 324 CEDGNILCLYAGILLILYDPSTQTVEILTNQDFEIKEAMWVHQIESFSFNSLHNIL 379

BLAST of MS018198 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 0

Query: 5   GVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIG-------- 64
           GVF+GTL L T   N +Y VWKM ++FSW KAF +  P    H     Q  G        
Sbjct: 263 GVFDGTLYL-TVSKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQPWGVSQLDPIK 322

Query: 65  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
           A EDG+ILCLL GL+ ILY+ +T+  ++LT Q   ++K   VHHIDSF+FNSL  IL
Sbjct: 323 ACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHLHVHHIDSFNFNSLPNIL 378

BLAST of MS018198 vs. ExPASy TrEMBL
Match: A0A6J1CQE2 (F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC111013202 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0

Query: 2   CSIGVFNGTLCLSTCILNLE-YHVWKMGEDFSWTKAFDVFIPTQCLHQ----SFHFQLIG 61
           CSIGVFNG+L L+        YHVWKM EDFSWTKAFDV +P   +H         QLI 
Sbjct: 260 CSIGVFNGSLYLTLAQGRYHAYHVWKMEEDFSWTKAFDVLLPKIYVHHRRLYDSQLQLIR 319

Query: 62  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKKVHHIDSFDFNSLYKIL 111
           A +DG+ILCL+ GL  ILYNS+T+RM+ LTYQH NIKKVH IDSF+F+SL+KIL
Sbjct: 320 ACDDGKILCLISGLDLILYNSKTQRMESLTYQHLNIKKVHRIDSFNFDSLHKIL 373

BLAST of MS018198 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 4   IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIG 63
           +GV+NGTL L+ C  + +YHVWKM EDFSW+K F + +P   LH         ++ QL+ 
Sbjct: 263 VGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLALPENILHSLHRHHPIGYYLQLVK 322

Query: 64  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
             EDG ILCL  G+  I+Y+ +T++M++LT Q F IK+    H I+SF FNSL+  L
Sbjct: 323 FCEDGSILCLCAGILLIVYDPKTQQMEILTDQDFEIKEGMWFHQIESFSFNSLHNTL 379

BLAST of MS018198 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 4   IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ-------SFHFQLIG 63
           +GV+NGTL L+ C  + +YHVWKM EDFSW+K F + +P   LH         ++ QL+ 
Sbjct: 263 VGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLALPENILHSLHRHHPIGYYLQLVK 322

Query: 64  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
             EDG ILCL  G+  I+Y+ +T++M++LT Q F IK+    H I+SF FNSL+  L
Sbjct: 323 FCEDGSILCLCAGILLIVYDPKTQQMEILTDQDFEIKEGMWFHQIESFSFNSLHNTL 379

BLAST of MS018198 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.9e-19
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0

Query: 4   IGVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQ------SFHFQLIGA 63
           I V+NGTL L+ C  + +YH WKM EDFSW+K F + +P    H        ++ QLI  
Sbjct: 264 IAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFVLALPENVHHSLRHHPIGYYLQLIKF 323

Query: 64  GEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
            EDG ILCL  G+  ILY+  T+ +++LT Q F IK+   VH I+SF FNSL+ IL
Sbjct: 324 CEDGNILCLYAGILLILYDPSTQTVEILTNQDFEIKEAMWVHQIESFSFNSLHNIL 379

BLAST of MS018198 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 0

Query: 5   GVFNGTLCLSTCILNLEYHVWKMGEDFSWTKAFDVFIPTQCLHQSFHFQLIG-------- 64
           GVF+GTL L T   N +Y VWKM ++FSW KAF +  P    H     Q  G        
Sbjct: 263 GVFDGTLYL-TVSKNNKYQVWKMKDNFSWIKAFVISSPRNLCHPDHPHQPWGVSQLDPIK 322

Query: 65  AGEDGEILCLLGGLYFILYNSRTERMKLLTYQHFNIKK---VHHIDSFDFNSLYKIL 111
           A EDG+ILCLL GL+ ILY+ +T+  ++LT Q   ++K   VHHIDSF+FNSL  IL
Sbjct: 323 ACEDGKILCLLAGLHLILYDPKTKSAEILTDQSVKVEKHLHVHHIDSFNFNSLPNIL 378

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143297.12.7e-2861.40F-box/kelch-repeat protein At3g06240-like [Momordica charantia][more]
XP_038880514.11.1e-2152.99putative F-box protein At1g46984 [Benincasa hispida][more]
XP_008450717.12.7e-2045.30PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ... [more]
XP_004135796.13.9e-1946.55putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot... [more]
TYK13067.13.1e-1647.86putative F-box protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CQE21.3e-2861.40F-box/kelch-repeat protein At3g06240-like OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A5D3CIX91.3e-2045.30Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A1S3BQV81.3e-2045.30putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... [more]
A0A0A0M1M51.9e-1946.55F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ... [more]
A0A5D3CM941.5e-1647.86Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018198.1MS018198.1mRNA