MS018188 (gene) Bitter gourd (TR) v1

Overview


Name	MS018188
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome c-type biogenesis protein CcmE
Location	scaffold56: 389862 .. 390635 (+)
RNA-Seq Expression	MS018188
Synteny	MS018188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCAATCTCGCCCTCCGATTGAGATCACAGCTCCTCTTGCGGTCAACTCGTTTCCAGTCCACTTTCCGCCACATTCCAGCTCCCCCCATCTCCAAATCTTCATCTCTAATTTCCCCCCCACTCTCCGATTTCCGTCGACTTCCTGATGTACCGGTCTTCAGCTTCTCTGGGTTTCGCTTTCTCTCAACGGCACGGCGGAATTTGACCCGTCCGAAGCAAGTAGACATCGGAGCCCGCGCCCGGCAGCTCCAGACGCGGCGGCTCTGGACCTACGCTCTGACCTTCAGCTGCATCGCGGGGTTTATCGTGATCGTACTCAGTAATTTTCAGGAGCATCTGATGTTCTACGTGACGCCGACCGATGCACTTGAGAAATACTCGGCGAATCCGTCGAAGAACAAGTTCCGGCTTGGTGGTCTGGTTCTCGAAGGCAGCGTGGTGCATCCGGCGTCGTCTCCGCAAATGGAGTTCGTGATTACGGATTTGATCACAGATATATTGGTCAGGCATCAGGGATCGTTGCCGGACTTGTTTAGGGAGGGGCATTCGGTGGTGGTGGAGGGTTTTGTGAAGCCATTTACCGATGAGATAAGGAAGGAGGTCTCTACGAAGAGTGTTTCGGGGAAAGCGAGGAGTGGGGATTACTACTTTTCGGCTACTGAGGTTTTGGCAAAGCATGATGAGAAGTATATGCCTGCGGAGGTTGCTGCAGCTATCGAGAAGAATAAGAAGAAGATCGAGGAAGGAGAATTGGGGGTGAACCACGCT

mRNA sequence

ATGGCTACCAATCTCGCCCTCCGATTGAGATCACAGCTCCTCTTGCGGTCAACTCGTTTCCAGTCCACTTTCCGCCACATTCCAGCTCCCCCCATCTCCAAATCTTCATCTCTAATTTCCCCCCCACTCTCCGATTTCCGTCGACTTCCTGATGTACCGGTCTTCAGCTTCTCTGGGTTTCGCTTTCTCTCAACGGCACGGCGGAATTTGACCCGTCCGAAGCAAGTAGACATCGGAGCCCGCGCCCGGCAGCTCCAGACGCGGCGGCTCTGGACCTACGCTCTGACCTTCAGCTGCATCGCGGGGTTTATCGTGATCGTACTCAGTAATTTTCAGGAGCATCTGATGTTCTACGTGACGCCGACCGATGCACTTGAGAAATACTCGGCGAATCCGTCGAAGAACAAGTTCCGGCTTGGTGGTCTGGTTCTCGAAGGCAGCGTGGTGCATCCGGCGTCGTCTCCGCAAATGGAGTTCGTGATTACGGATTTGATCACAGATATATTGGTCAGGCATCAGGGATCGTTGCCGGACTTGTTTAGGGAGGGGCATTCGGTGGTGGTGGAGGGTTTTGTGAAGCCATTTACCGATGAGATAAGGAAGGAGGTCTCTACGAAGAGTGTTTCGGGGAAAGCGAGGAGTGGGGATTACTACTTTTCGGCTACTGAGGTTTTGGCAAAGCATGATGAGAAGTATATGCCTGCGGAGGTTGCTGCAGCTATCGAGAAGAATAAGAAGAAGATCGAGGAAGGAGAATTGGGGGTGAACCACGCT

Coding sequence (CDS)

ATGGCTACCAATCTCGCCCTCCGATTGAGATCACAGCTCCTCTTGCGGTCAACTCGTTTCCAGTCCACTTTCCGCCACATTCCAGCTCCCCCCATCTCCAAATCTTCATCTCTAATTTCCCCCCCACTCTCCGATTTCCGTCGACTTCCTGATGTACCGGTCTTCAGCTTCTCTGGGTTTCGCTTTCTCTCAACGGCACGGCGGAATTTGACCCGTCCGAAGCAAGTAGACATCGGAGCCCGCGCCCGGCAGCTCCAGACGCGGCGGCTCTGGACCTACGCTCTGACCTTCAGCTGCATCGCGGGGTTTATCGTGATCGTACTCAGTAATTTTCAGGAGCATCTGATGTTCTACGTGACGCCGACCGATGCACTTGAGAAATACTCGGCGAATCCGTCGAAGAACAAGTTCCGGCTTGGTGGTCTGGTTCTCGAAGGCAGCGTGGTGCATCCGGCGTCGTCTCCGCAAATGGAGTTCGTGATTACGGATTTGATCACAGATATATTGGTCAGGCATCAGGGATCGTTGCCGGACTTGTTTAGGGAGGGGCATTCGGTGGTGGTGGAGGGTTTTGTGAAGCCATTTACCGATGAGATAAGGAAGGAGGTCTCTACGAAGAGTGTTTCGGGGAAAGCGAGGAGTGGGGATTACTACTTTTCGGCTACTGAGGTTTTGGCAAAGCATGATGAGAAGTATATGCCTGCGGAGGTTGCTGCAGCTATCGAGAAGAATAAGAAGAAGATCGAGGAAGGAGAATTGGGGGTGAACCACGCT

Protein sequence

MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGFRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAAIEKNKKKIEEGELGVNHA

Homology

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BLAST of MS018188 vs. NCBI nr
Match: XP_022154075.1 (uncharacterized protein LOC111021418 [Momordica charantia])

HSP 1 Score: 503.4 bits (1295), Expect = 1.1e-138
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF 60
           MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF
Sbjct: 1   MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF 60

Query: 61  RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT 120
           RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT
Sbjct: 61  RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT 120

Query: 121 PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF 180
           PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF
Sbjct: 121 PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF 180

Query: 181 REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA 240
           REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA
Sbjct: 181 REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA 240

Query: 241 IEKNKKKIEEGELGVNHA 259
           IEKNKKKIEEGELGVNHA
Sbjct: 241 IEKNKKKIEEGELGVNHA 258

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BLAST of MS018188 vs. NCBI nr
Match: XP_038880283.1 (cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida] >XP_038880284.1 cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida] >XP_038880285.1 cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida] >XP_038880286.1 cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hispida])

HSP 1 Score: 444.5 bits (1142), Expect = 6.2e-121
Identity = 230/259 (88.80%), Postives = 241/259 (93.05%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLRST-RFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60
           MATNLALRLRS+LLL+S+ RF+S F HI  P + KSS LIS  LSD RR P+ P+F+ SG
Sbjct: 1   MATNLALRLRSRLLLQSSARFRSNFHHIQPPHLPKSSPLISSALSDLRRFPNDPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEKYSANPSKNKFRLGGLVLEGSV+HPASS QMEFVITDLITDILVRHQGSLPDL
Sbjct: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVMHPASSSQMEFVITDLITDILVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFVKPFTDEIR EVSTKSVSGKARSG+YYFSATEVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFVKPFTDEIRNEVSTKSVSGKARSGEYYFSATEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 259
           AIEKNKKKI EGELG+NHA
Sbjct: 241 AIEKNKKKIAEGELGLNHA 259

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BLAST of MS018188 vs. NCBI nr
Match: TYK18839.1 (cytochrome c-type biogenesis protein CcmE [Cucumis melo var. makuwa])

HSP 1 Score: 432.6 bits (1111), Expect = 2.4e-117
Identity = 220/258 (85.27%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF 60
           MATNLA RLRS+LLL+S+RF++TF  I +P I KSS LIS  LSD RR+PD P+F+ SGF
Sbjct: 1   MATNLAFRLRSRLLLQSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSGF 60

Query: 61  RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT 120
           RF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYVT
Sbjct: 61  RFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVT 120

Query: 121 PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF 180
           PTDALEK+SANP+KNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDLF
Sbjct: 121 PTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLF 180

Query: 181 REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA 240
           REGHSVVVEGF+KPFTDEIR E+STKSVS KARS  YYFSA EVLAKHDEKYMPAEV AA
Sbjct: 181 REGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGAA 240

Query: 241 IEKNKKKIEEGELGVNHA 259
           IEKN+KKIEEGELGVNHA
Sbjct: 241 IEKNRKKIEEGELGVNHA 258

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BLAST of MS018188 vs. NCBI nr
Match: XP_004139025.1 (cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Cucumis sativus] >KGN66477.1 hypothetical protein Csa_007598 [Cucumis sativus])

HSP 1 Score: 430.6 bits (1106), Expect = 9.3e-117
Identity = 221/259 (85.33%), Postives = 238/259 (91.89%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLR-STRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60
           MATNLALRLRS+LLL+ S+RF++TF    +P I KSS LI+  LSD RR+P+ P+F+ SG
Sbjct: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+SANPSKNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVSGKARS  YYFSA EVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 259
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of MS018188 vs. NCBI nr
Match: XP_008450439.1 (PREDICTED: cytochrome c-type biogenesis protein CcmE [Cucumis melo] >KAA0059091.1 cytochrome c-type biogenesis protein CcmE [Cucumis melo var. makuwa])

HSP 1 Score: 427.9 bits (1099), Expect = 6.0e-116
Identity = 220/259 (84.94%), Postives = 236/259 (91.12%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLR-STRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60
           MATNLA RLRS+LLL+ S+RF++TF  I +P I KSS LIS  LSD RR+PD P+F+ SG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+SANP+KNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS  YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 259
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of MS018188 vs. ExPASy Swiss-Prot
Match: Q96326 (Cytochrome c-type biogenesis protein CcmE homolog, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CCME PE=1 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-82
Identity = 168/252 (66.67%), Postives = 198/252 (78.57%), Query Frame = 0


Query: 1   MATNLALRLRSQLL---LRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSF 60
           MA  L  R  SQ+L    R+ +  S+F   P  PI  S +  SP   D  RL      S 
Sbjct: 1   MAARLLFRRSSQILRSIQRNPQISSSFESPPC-PIFHSLTTASP---DPSRLS-----SL 60

Query: 61  SGFRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMF 120
           +  R LS ARR  TRPK++DIGA+ARQ+Q RRLWTYALTFSCIAGF+VIVL+ FQ+ L+F
Sbjct: 61  TFLRSLSIARRGPTRPKKIDIGAKARQMQNRRLWTYALTFSCIAGFVVIVLNQFQDQLVF 120

Query: 121 YVTPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLP 180
           Y+TP+DA+EK++ NP+KNKFRLGGLVLEGSV  PA+S +MEFVITDLITDILVR++GSLP
Sbjct: 121 YLTPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEMEFVITDLITDILVRYKGSLP 180

Query: 181 DLFREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEV 240
           DLFREGHSVVVEGF+KP+TDE+RKEVSTK +S KAR+ D +FSATEVLAKHDEKYMP EV
Sbjct: 181 DLFREGHSVVVEGFIKPYTDEVRKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEV 240

Query: 241 AAAIEKNKKKIE 250
           AAAIEKNKK IE
Sbjct: 241 AAAIEKNKKIIE 243

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BLAST of MS018188 vs. ExPASy Swiss-Prot
Match: Q5P3K6 (Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=ccmE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-19
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 86  QTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSANPSKNKFRLGGLVLE 145
           +++RL   A   + + G + +VL+ FQ++L+F+ TPT+  E     P    FR+GG+V  
Sbjct: 4   RSKRLLLVAGAVALLVGAVALVLNAFQQNLVFFHTPTEVAE--GKAPVGRAFRIGGMVET 63

Query: 146 GSVVHPASSPQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVST 205
           GS+   A    ++F ITD    I V ++GSLPDLF EG   VV+G + P           
Sbjct: 64  GSIRRAADGVTVQFAITDTAKVIPVSYKGSLPDLFSEGKGAVVQGTLGP----------- 123

Query: 206 KSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAAIEKNKK 247
                     D  F A+EVLAKHDE YMP E   A+++ +K
Sbjct: 124 ----------DGQFQASEVLAKHDENYMPPEAQHAVDQAQK 141

[Close]

BLAST of MS018188 vs. ExPASy Swiss-Prot
Match: Q2RYF4 (Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=ccmE PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-19
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 88  RRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSANPSKNKFRLGGLVLEGS 147
           RRL+   L    +     + L+ FQ++L+F+ +PTD  EK        +FR+GGLV EGS
Sbjct: 6   RRLYFVVLGMLALFAAAGLTLTAFQDNLVFFYSPTDLQEK--GVDQGRRFRVGGLVEEGS 65

Query: 148 VVHPASSPQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVSTKS 207
           VV    +  + F++TDL+  + VR+ G LPDLFREG  VV EG                 
Sbjct: 66  VVRDGET--VRFIVTDLMNTVTVRYTGMLPDLFREGQGVVAEG----------------- 125

Query: 208 VSGKARSGDYYFSATEVLAKHDEKYMPAEVAAAIEKNKK 247
               A  G   F A  VLAKHDE YMP EVA +++ + K
Sbjct: 126 ----AMDGAGTFVAASVLAKHDENYMPPEVAESLKASGK 139

[Close]

BLAST of MS018188 vs. ExPASy Swiss-Prot
Match: A1KCJ1 (Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain BH72) OX=418699 GN=ccmE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 9.3e-19
Identity = 60/161 (37.27%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 86  QTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSANPSKNKFRLGGLVLE 145
           + +RL       + +     +VLS FQ++L+F+ TP++  E     P    FR+GG+V  
Sbjct: 4   RNKRLMLVGGGIALLVAAAALVLSAFQQNLVFFHTPSEVAE--GKAPVGKTFRVGGMVET 63

Query: 146 GSVVHPASSPQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVST 205
           GS+   A    + FVITD    I V ++GSLPDLF+EG   VV+G +             
Sbjct: 64  GSIQRDADGVTVRFVITDTAKVIPVSYRGSLPDLFKEGKGAVVQGTL------------- 123

Query: 206 KSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAAIEKNKK 247
                     D  F ATEVLAKHDE YMP E A A+E+  K
Sbjct: 124 --------GADGQFRATEVLAKHDENYMPPEAAHALEQAHK 141

[Close]

BLAST of MS018188 vs. ExPASy Swiss-Prot
Match: B3R8Z5 (Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CCUG 44338 / CIP 107171 / LMG 19424 / R1) OX=977880 GN=ccmE PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 0


Query: 88  RRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVTPTDALEKYSANPSKNKFRLGGLVLEGS 147
           RRL   A   +C      +VL+ F+ +L+F+ +P+    + +  P    FRLGGLV  GS
Sbjct: 6   RRLGLLAAALACCGVAAALVLNAFRANLVFFFSPSQVAAQEA--PVARSFRLGGLVASGS 65

Query: 148 VVHPASSPQMEFVITDLITDILVRHQGSLPDLFREGHSVVVEGFVKPFTDEIRKEVSTKS 207
           +        + FV+TD    + V+++G LPDLFREG  VV  G ++              
Sbjct: 66  IRREGDGMTVRFVVTDTARQVPVQYRGLLPDLFREGKGVVARGQLR-------------- 125

Query: 208 VSGKARSGDYYFSATEVLAKHDEKYMPAEVAAAIEK 244
                   D  F ATEVLAKHDE YMP E AAA+++
Sbjct: 126 -------ADGTFVATEVLAKHDENYMPPEAAAALKQ 138

[Close]

BLAST of MS018188 vs. ExPASy TrEMBL
Match: A0A6J1DIL0 (uncharacterized protein LOC111021418 OS=Momordica charantia OX=3673 GN=LOC111021418 PE=3 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.5e-139
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF 60
           MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF
Sbjct: 1   MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF 60

Query: 61  RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT 120
           RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT
Sbjct: 61  RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT 120

Query: 121 PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF 180
           PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF
Sbjct: 121 PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF 180

Query: 181 REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA 240
           REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA
Sbjct: 181 REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA 240

Query: 241 IEKNKKKIEEGELGVNHA 259
           IEKNKKKIEEGELGVNHA
Sbjct: 241 IEKNKKKIEEGELGVNHA 258

[Close]

BLAST of MS018188 vs. ExPASy TrEMBL
Match: A0A5D3D5K7 (Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00310 PE=3 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.2e-117
Identity = 220/258 (85.27%), Postives = 236/258 (91.47%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSGF 60
           MATNLA RLRS+LLL+S+RF++TF  I +P I KSS LIS  LSD RR+PD P+F+ SGF
Sbjct: 1   MATNLAFRLRSRLLLQSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSGF 60

Query: 61  RFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYVT 120
           RF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYVT
Sbjct: 61  RFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVT 120

Query: 121 PTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDLF 180
           PTDALEK+SANP+KNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDLF
Sbjct: 121 PTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLF 180

Query: 181 REGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAAA 240
           REGHSVVVEGF+KPFTDEIR E+STKSVS KARS  YYFSA EVLAKHDEKYMPAEV AA
Sbjct: 181 REGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGAA 240

Query: 241 IEKNKKKIEEGELGVNHA 259
           IEKN+KKIEEGELGVNHA
Sbjct: 241 IEKNRKKIEEGELGVNHA 258

[Close]

BLAST of MS018188 vs. ExPASy TrEMBL
Match: A0A0A0M028 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613490 PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 4.5e-117
Identity = 221/259 (85.33%), Postives = 238/259 (91.89%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLR-STRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60
           MATNLALRLRS+LLL+ S+RF++TF    +P I KSS LI+  LSD RR+P+ P+F+ SG
Sbjct: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+SANPSKNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVSGKARS  YYFSA EVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNKKKIEEGELGVNHA 259
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of MS018188 vs. ExPASy TrEMBL
Match: A0A5A7V022 (Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold601G00020 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.9e-116
Identity = 220/259 (84.94%), Postives = 236/259 (91.12%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLR-STRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60
           MATNLA RLRS+LLL+ S+RF++TF  I +P I KSS LIS  LSD RR+PD P+F+ SG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+SANP+KNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS  YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 259
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of MS018188 vs. ExPASy TrEMBL
Match: A0A1S3BP93 (cytochrome c-type biogenesis protein CcmE OS=Cucumis melo OX=3656 GN=LOC103492039 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 2.9e-116
Identity = 220/259 (84.94%), Postives = 236/259 (91.12%), Query Frame = 0


Query: 1   MATNLALRLRSQLLLR-STRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSFSG 60
           MATNLA RLRS+LLL+ S+RF++TF  I +P I KSS LIS  LSD RR+PD P+F+ SG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMFYV 120
           FRF STARRNLTRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLPDL 180
           TPTDALEK+SANP+KNKFRLGGLVLEGSV HPASS QMEFVITDLITD+LVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+STKSVS KARS  YYFSA EVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNKKKIEEGELGVNHA 259
           AIEKN+KKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]

BLAST of MS018188 vs. TAIR 10
Match: AT3G51790.1 (transmembrane protein G1P-related 1 )

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-83
Identity = 168/252 (66.67%), Postives = 198/252 (78.57%), Query Frame = 0


Query: 1   MATNLALRLRSQLL---LRSTRFQSTFRHIPAPPISKSSSLISPPLSDFRRLPDVPVFSF 60
           MA  L  R  SQ+L    R+ +  S+F   P  PI  S +  SP   D  RL      S 
Sbjct: 1   MAARLLFRRSSQILRSIQRNPQISSSFESPPC-PIFHSLTTASP---DPSRLS-----SL 60

Query: 61  SGFRFLSTARRNLTRPKQVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLSNFQEHLMF 120
           +  R LS ARR  TRPK++DIGA+ARQ+Q RRLWTYALTFSCIAGF+VIVL+ FQ+ L+F
Sbjct: 61  TFLRSLSIARRGPTRPKKIDIGAKARQMQNRRLWTYALTFSCIAGFVVIVLNQFQDQLVF 120

Query: 121 YVTPTDALEKYSANPSKNKFRLGGLVLEGSVVHPASSPQMEFVITDLITDILVRHQGSLP 180
           Y+TP+DA+EK++ NP+KNKFRLGGLVLEGSV  PA+S +MEFVITDLITDILVR++GSLP
Sbjct: 121 YLTPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEMEFVITDLITDILVRYKGSLP 180

Query: 181 DLFREGHSVVVEGFVKPFTDEIRKEVSTKSVSGKARSGDYYFSATEVLAKHDEKYMPAEV 240
           DLFREGHSVVVEGF+KP+TDE+RKEVSTK +S KAR+ D +FSATEVLAKHDEKYMP EV
Sbjct: 181 DLFREGHSVVVEGFIKPYTDEVRKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEV 240

Query: 241 AAAIEKNKKKIE 250
           AAAIEKNKK IE
Sbjct: 241 AAAIEKNKKIIE 243

The following BLAST results are available for this feature:

BLAST of MS018188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154075.1	1.1e-138	100.00	uncharacterized protein LOC111021418 [Momordica charantia]	[more]
XP_038880283.1	6.2e-121	88.80	cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Benincasa hisp...	[more]
TYK18839.1	2.4e-117	85.27	cytochrome c-type biogenesis protein CcmE [Cucumis melo var. makuwa]	[more]
XP_004139025.1	9.3e-117	85.33	cytochrome c-type biogenesis protein CcmE homolog, mitochondrial [Cucumis sativu...	[more]
XP_008450439.1	6.0e-116	84.94	PREDICTED: cytochrome c-type biogenesis protein CcmE [Cucumis melo] >KAA0059091....	[more]

BLAST of MS018188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96326	1.6e-82	66.67	Cytochrome c-type biogenesis protein CcmE homolog, mitochondrial OS=Arabidopsis ...	[more]
Q5P3K6	1.1e-19	36.65	Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum (strain EbN1...	[more]
Q2RYF4	1.4e-19	38.99	Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC ...	[more]
A1KCJ1	9.3e-19	37.27	Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain BH72) OX=41869...	[more]
B3R8Z5	1.2e-18	36.54	Cytochrome c-type biogenesis protein CcmE OS=Cupriavidus taiwanensis (strain DSM...	[more]

BLAST of MS018188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIL0	5.5e-139	100.00	uncharacterized protein LOC111021418 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5D3D5K7	1.2e-117	85.27	Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0M028	4.5e-117	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613490 PE=3 SV=1	[more]
A0A5A7V022	2.9e-116	84.94	Cytochrome c-type biogenesis protein CcmE OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BP93	2.9e-116	84.94	cytochrome c-type biogenesis protein CcmE OS=Cucumis melo OX=3656 GN=LOC10349203...	[more]

BLAST of MS018188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51790.1	1.1e-83	66.67	transmembrane protein G1P-related 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004329	CcmE/CycJ protein	PFAM	PF03100	CcmE	coord: 86..234 e-value: 6.9E-44 score: 148.9
IPR004329	CcmE/CycJ protein	PANTHER	PTHR34128	CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCME HOMOLOG, MITOCHONDRIAL	coord: 1..252
IPR004329	CcmE/CycJ protein	HAMAP	MF_01959	CcmE	coord: 83..245 score: 24.769604
None	No IPR available	GENE3D	2.40.50.140		coord: 111..241 e-value: 1.2E-29 score: 104.6
IPR036127	CcmE-like superfamily	SUPERFAMILY	82093	Heme chaperone CcmE	coord: 111..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018188.1	MS018188.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
biological_process	GO:0017003	protein-heme linkage
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0020037	heme binding