MS018155 (gene) Bitter gourd (TR) v1

Overview


Name	MS018155
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DUF1664 domain-containing protein
Location	scaffold166: 154823 .. 155079 (-)
RNA-Seq Expression	MS018155
Synteny	MS018155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTTCAGGGAACTATTTTTCTTACTTGGTACCAGCAGCTGCAATTGGAGTAATGAGATATTGTTACATGTGGTGGAAGGTAAAACCTTCTGGAAAATTTTAACTCTGCAAGACACACTATTAAGTGTTTTGTATAAACATATTTTTGTAGCTTGCTTGGGTTTGCTTATAAATTTTCTTACTACTCTCTAGCAGGGATGTTCATTTTCTGACATAATGCTTGTGACGAAGCAAAACATGGCAAATGCTGTCTCG

mRNA sequence

CTTCTTTCAGGGAACTATTTTTCTTACTTGGTACCAGCAGCTGCAATTGGAGTAATGAGATATTGTTACATGTGGTGGAAGGGATGTTCATTTTCTGACATAATGCTTGTGACGAAGCAAAACATGGCAAATGCTGTCTCG

Coding sequence (CDS)

CTTCTTTCAGGGAACTATTTTTCTTACTTGGTACCAGCAGCTGCAATTGGAGTAATGAGATATTGTTACATGTGGTGGAAGGGATGTTCATTTTCTGACATAATGCTTGTGACGAAGCAAAACATGGCAAATGCTGTCTCG

Protein sequence

LLSGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS

Homology

[Close]

BLAST of MS018155 vs. NCBI nr
Match: XP_031736731.1 (uncharacterized protein LOC101208062 isoform X1 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 2   LSGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           LSGNY SYLVPAAA+G M YCYMWWKG SFSD+M VTKQNMANAVS
Sbjct: 114 LSGNYASYLVPAAAVGAMGYCYMWWKGLSFSDVMFVTKQNMANAVS 159

[Close]

BLAST of MS018155 vs. NCBI nr
Match: XP_038901102.1 (uncharacterized protein LOC120088108 [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 7.8e-14
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 91  SGNYASYLVPAAAVGAMGYCYMWWKGLSFSDIMFVTKQNMANAVS 135

[Close]

BLAST of MS018155 vs. NCBI nr
Match: XP_022947064.1 (uncharacterized protein LOC111451050 [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 92  SGNYASYLVPAAAVGAMGYCYMWWKGWSFSDIMFVTKQNMANAVS 136

[Close]

BLAST of MS018155 vs. NCBI nr
Match: KAG7026976.1 (hypothetical protein SDJN02_10984 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 92  SGNYASYLVPAAAVGAMGYCYMWWKGWSFSDIMFVTKQNMANAVS 136

[Close]

BLAST of MS018155 vs. NCBI nr
Match: KAG6604894.1 (hypothetical protein SDJN03_02211, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 92  SGNYASYLVPAAAVGAMGYCYMWWKGWSFSDIMFVTKQNMANAVS 136

[Close]

BLAST of MS018155 vs. ExPASy TrEMBL
Match: A0A6J1I0X1 (uncharacterized protein LOC111469838 OS=Cucurbita maxima OX=3661 GN=LOC111469838 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 92  SGNYASYLVPAAAVGAMGYCYMWWKGWSFSDIMFVTKQNMANAVS 136

[Close]

BLAST of MS018155 vs. ExPASy TrEMBL
Match: A0A0A0LT32 (DUF1664 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G408370 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSD+M VTKQNMANAVS
Sbjct: 93  SGNYASYLVPAAAVGAMGYCYMWWKGLSFSDVMFVTKQNMANAVS 137

[Close]

BLAST of MS018155 vs. ExPASy TrEMBL
Match: A0A6J1CHX0 (uncharacterized protein LOC111011327 OS=Momordica charantia OX=3673 GN=LOC111011327 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 92  SGNYSSYLVPAAAVGAMGYCYMWWKGWSFSDIMFVTKQNMANAVS 136

[Close]

BLAST of MS018155 vs. ExPASy TrEMBL
Match: A0A6J1G5P9 (uncharacterized protein LOC111451050 OS=Cucurbita moschata OX=3662 GN=LOC111451050 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-14
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           SGNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 92  SGNYASYLVPAAAVGAMGYCYMWWKGWSFSDIMFVTKQNMANAVS 136

[Close]

BLAST of MS018155 vs. ExPASy TrEMBL
Match: A0A5A7UGB0 (DUF1664 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00480 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 4   GNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           GNY SYLVPAAA+G M YCYMWWKG SFSDIM VTKQNMANAVS
Sbjct: 94  GNYASYLVPAAAVGAMGYCYMWWKGLSFSDIMFVTKQNMANAVS 137

[Close]

BLAST of MS018155 vs. TAIR 10
Match: AT1G04960.1 (Protein of unknown function (DUF1664) )

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           S  Y SYLVPAAA+G M YCYMWWKG SFSD M VTK+NMA+AV+
Sbjct: 89  SSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADAVA 133

[Close]

BLAST of MS018155 vs. TAIR 10
Match: AT1G04960.2 (Protein of unknown function (DUF1664) )

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-14
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 3   SGNYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           S  Y SYLVPAAA+G M YCYMWWKG SFSD M VTK+NMA+AV+
Sbjct: 106 SSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADAVA 150

[Close]

BLAST of MS018155 vs. TAIR 10
Match: AT2G02730.1 (Protein of unknown function (DUF1664) )

HSP 1 Score: 59.3 bits (142), Expect = 9.5e-10
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 5   NYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           ++  ++VPAA +G + Y YMW+KG SFSDIM VTK+NM NAVS
Sbjct: 89  DFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNMENAVS 131

[Close]

BLAST of MS018155 vs. TAIR 10
Match: AT2G02730.2 (Protein of unknown function (DUF1664) )

HSP 1 Score: 59.3 bits (142), Expect = 9.5e-10
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 5   NYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           ++  ++VPAA +G + Y YMW+KG SFSDIM VTK+NM NAVS
Sbjct: 89  DFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNMENAVS 131

[Close]

BLAST of MS018155 vs. TAIR 10
Match: AT1G27000.1 (Protein of unknown function (DUF1664) )

HSP 1 Score: 57.8 bits (138), Expect = 2.8e-09
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 5   NYFSYLVPAAAIGVMRYCYMWWKGCSFSDIMLVTKQNMANAVS 48
           N  +  VPAAA+G + Y YMWWKG SF+D+M VTK NMA AV+
Sbjct: 92  NLQALAVPAAALGALGYGYMWWKGLSFTDLMYVTKANMAAAVA 134

The following BLAST results are available for this feature:

BLAST of MS018155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736731.1	3.5e-14	84.78	uncharacterized protein LOC101208062 isoform X1 [Cucumis sativus]	[more]
XP_038901102.1	7.8e-14	86.67	uncharacterized protein LOC120088108 [Benincasa hispida]	[more]
XP_022947064.1	1.0e-13	86.67	uncharacterized protein LOC111451050 [Cucurbita moschata]	[more]
KAG7026976.1	1.0e-13	86.67	hypothetical protein SDJN02_10984 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6604894.1	1.0e-13	86.67	hypothetical protein SDJN03_02211, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS018155 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I0X1	5.0e-14	86.67	uncharacterized protein LOC111469838 OS=Cucurbita maxima OX=3661 GN=LOC111469838...	[more]
A0A0A0LT32	5.0e-14	84.44	DUF1664 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G408370 PE=...	[more]
A0A6J1CHX0	5.0e-14	86.67	uncharacterized protein LOC111011327 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G5P9	5.0e-14	86.67	uncharacterized protein LOC111451050 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A5A7UGB0	1.1e-13	86.36	DUF1664 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of MS018155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04960.1	2.2e-14	73.33	Protein of unknown function (DUF1664)	[more]
AT1G04960.2	2.2e-14	73.33	Protein of unknown function (DUF1664)	[more]
AT2G02730.1	9.5e-10	60.47	Protein of unknown function (DUF1664)	[more]
AT2G02730.2	9.5e-10	60.47	Protein of unknown function (DUF1664)	[more]
AT1G27000.1	2.8e-09	60.47	Protein of unknown function (DUF1664)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012458	Domain of unknown function DUF1664	PFAM	PF07889	DUF1664	coord: 5..47 e-value: 3.2E-17 score: 62.7
None	No IPR available	PANTHER	PTHR46667	OS05G0182700 PROTEIN	coord: 3..47
None	No IPR available	PANTHER	PTHR46667:SF1	OS09G0482740 PROTEIN	coord: 3..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018155.1	MS018155.1	mRNA