MS018040 (gene) Bitter gourd (TR) v1

Overview


Name	MS018040
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-binding protein 2-like
Location	scaffold1336: 126661 .. 131210 (-)
RNA-Seq Expression	MS018040
Synteny	MS018040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCTTCTTTCACTCTCTGCAGAACTTCCATCCTCTGGATTGCCTACAGGCCATGAGATGCACAATTATTTAGTAAGTGATGATCGTGGTGGTCCTCGGGCTGTTAAAGATACACAAACGATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGGTATGACTGAAATCTTCATTTATTTTCTCTTCTTGCCTTGCTGTTCGAGTGCTGAAAACTTGTCCTAATTGCTTCTGAAGCAACTTTCTTCTTTTAATTCTGGAGAAGTACCTACCCATGGGGATATGGGAATGGCAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTCAATACCCGATCCTGTTGTAATGAGTCGTCCTCCTGCAGTTTCTCCCGATCTGGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTCCCCATGGATTCAATGACCAGACCAGGACGTGAAACTGTACCTCTTCCACCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTTCAGACAGTTCCAGGAGAGAAGTAGCTCGTATCCTTTATCTTAGTGGCGACCCCGATGCAAAATTATTTTTTCTTCCTTTTCAATTATTTAGTTAAGAACTTCATTCCTTTACTTCAATTTAGATATTTTCCGCCCGTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATGTAATTGGCTTTTTCCTTGTAATTATTTTCTTGTTTTTTGATTTCTTTGTTAACTCCTTAATATGTGCTAACCTTTACTGTGTTTTTTATGTCACATTTGTTCCAAAATAAAGCGTGGTGGGGACCCTCTTATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCCTTGCAAGGTGAATGATCAAATTCCAATTCTTTCTTTTTCCATTGATTCTTTTCCATGTATGGATCCATGGGCCCTATGCGTCAAGATTATATTCAAATTTCTTCCACATTGGCTTTTGCTCTTCTTATAGAAGCAACATTTTTCCCATGTCACTTCATTTTCACTCCAGATAAAAAAGATTGGGATTAATAATTAATAGTAGAATATCCTCTTCTTTAGACAAAATCTTATCATGTATATACTATTACTGAACTTATTTACATGCGTGTATATCATGTCTTTCTGGTTATTTGGGGTGACTATGAGCGTTCTTGTTTGTGTTCCATGTTGAGGAGTTTTGGACAACTTAGGAGTTTTGGTTAGAGTTGGAAACCTTACCTGGGACGGGGTCGCATTACCAAAATCCCACGGCATTTTAATACTTTGATCAAGGAGTCATCTTTGAGAATTTCCCAGAATTTACAATCTTTCATGGAGAGGAAAACCTGCTTTTACAGGCCGTGTTTGAATTGGAATTACACTTAGTGGGATCTCAGTTTAAGTAGGAATCTTCATGAAGTGGTGGAGTGGATTGCTCTCATAGTAGATAAGGGGCATTGCTTGATTAGTAAAGAGGAAGAGCATATTTGGACAAAGGGAAGTTTTGGGTTCATATTCTTGTAACTCAGGTTTGGTAAGATCAGTGTTTGGAGAAACTATATTTCAGTGTAAGAGTTCAGAGAATTCCATTTTCAGTGCAAGATTTCATAGGAGCTGTTTGATGTATCCTTGTCCAGAGAAGATTAAAATTTGTCTGGACTCTTTTTTTGGGAGGGTGGATACTTAAGACAAGATCCAGACAGAAAACCCTTTCAGTTGAGTAGTCAATGGATCACCCTTTTTCTTTGGCTCCTGTAATGGAGCCTTTGGAGATTTCTTCTGCGTTCTTCACTTATGCAGGAAGCACAAGTGGAGCCTTTGGAGATTTCTTCTTCACAATTTCATTATGCAGGCTCTGTCTTCCCCCCGAAAAACCAAGAGAGAGAGAGAGAGAGAGCCTTTTTTCTTCCCTTCATGGCCATCCGTTTACAAAGAGAGCTAAACTATGGCTTATTAGAGTTACACCAGTGCTTTAAGAAGTGTGATTAGAGTTTGAGATAAATGGAAGAACTTTTCAAGATGAGGAACATTGGTGAAGAAAATTTGTGAAATGTTTTTTTGCGACTCCATGTGTTGTTCTCTACAAGTATAGTGGGTTTTTGTTACTCCAGCTTTTGGAAGCTAGTCTTGTTTGTACATCTTATTAATGAAATTTTGTTTCCTATTAAAGATGACATGTAGTTGCATGCTTAATTCACTATTCTGCTATGATGGTATATATGTGCAAGCAGTTACGTCATTCATGTGGCAACTAGTTTATATTTAGTATTTTTGTTGAAAGAATACACGTATATATACTCACAAATTGACTGATTACACAGGTTATAAAATGGACGAACAAGATCCTGAATCTAATTACTTGCGACTCCAGTTCTCACGACATCCAGGTCCGAGGTCTGGTTCTGGATCTGGTGGTAAAAGGTGAATAAGCTTTAGAGACAGGATGGGCAATTTAAATGGGAGACGTATCATCTTCTAGTGCACACTTTACTAGCTGCTCATGCGCCCATTATATGTTAGACATGCTGTTAAGATAGCCAAATTGTAGTCGACCCCACTGAATATTTAAGTTGCATTTAAATTTAAGGGGATTAGATCCAAAGAGTTGTAATAGTCAATTGTGCAATTGAATTTTGATGTACAATCATGTCAATGGTTCAGAAAGTGAAGATATGTCTGGTACAATTTTATAAACTGTTGTTTTTACCCACACAAACAAAAAATACGCTTCCACTTAAAAGTTTTGGCCGATGCATTAATATTTTAAACTCCAATATTTGTGACATATTGAAAGGTTAGTTTTTGGTTTTATAAGGGCGCTCGAGAATCTCCATGAATCCCTAGCAAGTTAATATAGGTTCTCATTTAAAATTGCTCTTAAGTTATAATTATTCTTACTTCCTCACCCCATCCCAATTTTGTGTCTGCAGATTATTGTAGCTTCTTGTCAGGAACAATTAAGATAAATGTTGTTTGGGGTCCTATTAGTAGCTGATAACTTTGTTTGTTAGATTATATTGAACTATTGGAAATCTATGAATATTTTGAGTAACAGGGGTGAAGACAACCAATTTCATTATTGTTTGGATTTGAGCTTTTGCTTAAAGAGGTAGATATTCAAGTTCTTCGAATTACATGGAATTATTTTACTGTATTTCTAAATCAAATTAGTACAATTTTTATTTCATTGTTTTCTATTGCTATCACATTTGCATGGTAAGATTCATTCAGGTACTGAAGCAGGAACTTTCAGATTTCCTGCATCCTCCAACGCACCAAAATCAGCCTATTTCGGTCGCCATTCAACCCATACGAGTATGCAATTCCCCAGGTAACTAACTTTCAAAAACTGTACTAACTGTATGCCGTCCCATGCAATAAAATGTTAGTTTGAGGCATCAGTTACAGTCAAACATACCTCTTGACATGATGATGTCTTATCCCCATGTAAGTAAAACAAATAGGATTCAGAGCTAAATTTCGACTTCAAGATGGATTATTTCAATCAACTAGTCTTTATTAGTTGAACAGTCACCATAAAAGAAATTTCTTTGATTTAGGTAGTAAGTATCTTGGAAGTTTCCCAGCTATCATCTTATAAATCACCTTCTTTTTGAAGATCCACGAAATTTCAGGGCAGTTTCCTAGCTATCATCTTATAAATCACTATGTAGAAGTCGAGAGATGACTACAAGAGCAATGCTATTGTATGGATTTATTAAGTTGGTCGTTTTGCATGCTGAATTTGAATTTTCTATAGTTATGGCCCCAGCTATTTATGACATTGAATTTTGTATCCTAGAGTTCATATTTGTACAAACTTTTCCATGTCTTCTCCCGCTGTCCATTTGAGTGATAGAAAGGGGTGTCCCTACTGTTGATGTTGCATGCCAAACAGTTATGATTCTGAATTTTCTATAGAATGTTTATGAGAAATTTTCATATATAATTAGTGGGAGAGGCCAAGTTTTGAAACCCAGCTCCGGTTGTTGAGATTGGAGAGGAATATGGGGTGTGCAACTGCAATACTTATTGCATGGGTCTGTTTAAATGTGTCAACAAAATTAAGTGCACAACACGTTCATCCATCTTCTCCTCCTCCAGCAGCTCCTCCTCCCATTGTTTCCTTGTTTCCCTTGCCACCAAAGAAGCATAAGCAATTACAGTGGTCACTACCTCCGGTTGCTGAGCCAATAGTTCCCTATTTTCCTTTTGTGTATATACCATCTCCATCTGTGAAGCCTTATGAACACACATCACCACCACCACCATCTCCGGTTGCCGTTGCGGAGCCAATAGTTCCCTATTTCCCTTTTGTATATATACCATCTCCATCTGTGAAACCTTATGAACACACATCACCATCACCACCATCTCCGGTTGCTGTTGCCGAACCGATAGTTCCATATTTTCCTTTCACATTTACACCATCCCCATCGGAGGAACCTTATGAACATACACCACCGCCGCCCTCTGCAAAACGCCCCTATCGTTCTCCACTCAACCACCTTCCCCCG

mRNA sequence

GCCCTTCTTTCACTCTCTGCAGAACTTCCATCCTCTGGATTGCCTACAGGCCATGAGATGCACAATTATTTAGTAAGTGATGATCGTGGTGGTCCTCGGGCTGTTAAAGATACACAAACGATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTAATTCTGGAGAAGTACCTACCCATGGGGATATGGGAATGGCAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTCAATACCCGATCCTGTTGTAATGAGTCGTCCTCCTGCAGTTTCTCCCGATCTGGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTCCCCATGGATTCAATGACCAGACCAGGACGTGAAACTGTACCTCTTCCACCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTTCAGACAGTTCCAGGAGAGAAGTAGCTCATATTTTCCGCCCGTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCTCTTATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCCTTGCAAGGTTATAAAATGGACGAACAAGATCCTGAATCTAATTACTTGCGACTCCAGTTCTCACGACATCCAGGTCCGAGGTCTGGTTCTGGATCTGGTGTACAATTTTTATTTCATTGTTTTCTATTGCTATCACATTTGCATGGTAAGATTCATTCAGGTACTGAAGCAGGAACTTTCAGATTTCCTGCATCCTCCAACGCACCAAAATCAGCCTATTTCGGTCGCCATTCAACCCATACGAGTATGCAATTCCCCAGGCCAAGTTTTGAAACCCAGCTCCGGTTGTTGAGATTGGAGAGGAATATGGGGTGTGCAACTGCAATACTTATTGCATGGGTCTGTTTAAATGTGTCAACAAAATTAAGTGCACAACACGTTCATCCATCTTCTCCTCCTCCAGCAGCTCCTCCTCCCATTGTTTCCTTGTTTCCCTTGCCACCAAAGAAGCATAAGCAATTACAGTGGTCACTACCTCCGGTTGCTGAGCCAATAGTTCCCTATTTTCCTTTTGTGTATATACCATCTCCATCTGTGAAGCCTTATGAACACACATCACCACCACCACCATCTCCGGTTGCCGTTGCGGAGCCAATAGTTCCCTATTTCCCTTTTGTATATATACCATCTCCATCTGTGAAACCTTATGAACACACATCACCATCACCACCATCTCCGGTTGCTGTTGCCGAACCGATAGTTCCATATTTTCCTTTCACATTTACACCATCCCCATCGGAGGAACCTTATGAACATACACCACCGCCGCCCTCTGCAAAACGCCCCTATCGTTCTCCACTCAACCACCTTCCCCCG

Coding sequence (CDS)

GCCCTTCTTTCACTCTCTGCAGAACTTCCATCCTCTGGATTGCCTACAGGCCATGAGATGCACAATTATTTAGTAAGTGATGATCGTGGTGGTCCTCGGGCTGTTAAAGATACACAAACGATTGGATCAGCATATGATCGTTATCTCCAAAGTGTGCAACTTTCTTCTTTTAATTCTGGAGAAGTACCTACCCATGGGGATATGGGAATGGCAAGGCCTGTTGCAAACAGAATGCCAGTTGGGAGTAGAATGCCTGGGCCTTCAATACCCGATCCTGTTGTAATGAGTCGTCCTCCTGCAGTTTCTCCCGATCTGGCACCAAATGGTCGAAATATTGAGTATGGTAATCATCTCCCCATGGATTCAATGACCAGACCAGGACGTGAAACTGTACCTCTTCCACCTGATGCCTCCAACACTTTATATGTTGAAGGACTTCCTTCAGACAGTTCCAGGAGAGAAGTAGCTCATATTTTCCGCCCGTTTGTGGGATATAAAGAATTGAGACTTGTGAGCAAAGAATCTAAACATCGTGGTGGGGACCCTCTTATATTATGTTTTGTGGATTTTGCAAACCCAGCCTGTGCAGCAACTGCCATGAGTGCCTTGCAAGGTTATAAAATGGACGAACAAGATCCTGAATCTAATTACTTGCGACTCCAGTTCTCACGACATCCAGGTCCGAGGTCTGGTTCTGGATCTGGTGTACAATTTTTATTTCATTGTTTTCTATTGCTATCACATTTGCATGGTAAGATTCATTCAGGTACTGAAGCAGGAACTTTCAGATTTCCTGCATCCTCCAACGCACCAAAATCAGCCTATTTCGGTCGCCATTCAACCCATACGAGTATGCAATTCCCCAGGCCAAGTTTTGAAACCCAGCTCCGGTTGTTGAGATTGGAGAGGAATATGGGGTGTGCAACTGCAATACTTATTGCATGGGTCTGTTTAAATGTGTCAACAAAATTAAGTGCACAACACGTTCATCCATCTTCTCCTCCTCCAGCAGCTCCTCCTCCCATTGTTTCCTTGTTTCCCTTGCCACCAAAGAAGCATAAGCAATTACAGTGGTCACTACCTCCGGTTGCTGAGCCAATAGTTCCCTATTTTCCTTTTGTGTATATACCATCTCCATCTGTGAAGCCTTATGAACACACATCACCACCACCACCATCTCCGGTTGCCGTTGCGGAGCCAATAGTTCCCTATTTCCCTTTTGTATATATACCATCTCCATCTGTGAAACCTTATGAACACACATCACCATCACCACCATCTCCGGTTGCTGTTGCCGAACCGATAGTTCCATATTTTCCTTTCACATTTACACCATCCCCATCGGAGGAACCTTATGAACATACACCACCGCCGCCCTCTGCAAAACGCCCCTATCGTTCTCCACTCAACCACCTTCCCCCG

Protein sequence

ALLSLSAELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGVQFLFHCFLLLSHLHGKIHSGTEAGTFRFPASSNAPKSAYFGRHSTHTSMQFPRPSFETQLRLLRLERNMGCATAILIAWVCLNVSTKLSAQHVHPSSPPPAAPPPIVSLFPLPPKKHKQLQWSLPPVAEPIVPYFPFVYIPSPSVKPYEHTSPPPPSPVAVAEPIVPYFPFVYIPSPSVKPYEHTSPSPPSPVAVAEPIVPYFPFTFTPSPSEEPYEHTPPPPSAKRPYRSPLNHLPP

Homology

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BLAST of MS018040 vs. NCBI nr
Match: XP_022141348.1 (RNA-binding protein 2-like [Momordica charantia])

HSP 1 Score: 471.5 bits (1212), Expect = 8.7e-129
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD
Sbjct: 27  ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG
Sbjct: 87  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 254

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BLAST of MS018040 vs. NCBI nr
Match: XP_038884976.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 448.7 bits (1153), Expect = 6.1e-122
Identity = 214/228 (93.86%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELPSSGLP+GHEMHNYL SDDRGG R+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+
Sbjct: 27  ELPSSGLPSGHEMHNYLASDDRGGLRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGM RPVANRMPVGSRMPGP +PDP+VMSRPPAVSPD+APNGRNIEYGNHLP+DSM+RPG
Sbjct: 87  MGMGRPVANRMPVGSRMPGPLLPDPIVMSRPPAVSPDIAPNGRNIEYGNHLPVDSMSRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 254

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BLAST of MS018040 vs. NCBI nr
Match: XP_031743537.1 (RNA-binding protein 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 7.9e-122
Identity = 214/241 (88.80%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGM RPVANRMPVG+RMPGP +PDP+VMSRPPAVSPDLAPNGRN+EYGNHLP+DSM+RPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGVQFLFHCFLLLS 247
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG +       +L 
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKRNLESSCVLQ 266

Query: 248 H 249
           H
Sbjct: 267 H 267

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BLAST of MS018040 vs. NCBI nr
Match: XP_031743540.1 (RNA-binding protein 2 isoform X6 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 7.9e-122
Identity = 214/241 (88.80%), Postives = 226/241 (93.78%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGM RPVANRMPVG+RMPGP +PDP+VMSRPPAVSPDLAPNGRN+EYGNHLP+DSM+RPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGVQFLFHCFLLLS 247
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG +       +L 
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKRNLESSCVLQ 266

Query: 248 H 249
           H
Sbjct: 267 H 267

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BLAST of MS018040 vs. NCBI nr
Match: XP_031743541.1 (RNA-binding protein 2 isoform X7 [Cucumis sativus])

HSP 1 Score: 447.6 bits (1150), Expect = 1.3e-121
Identity = 212/228 (92.98%), Postives = 222/228 (97.37%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+
Sbjct: 27  ELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGM RPVANRMPVG+RMPGP +PDP+VMSRPPAVSPDLAPNGRN+EYGNHLP+DSM+RPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPVDSMSRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 254

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BLAST of MS018040 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 8.3e-74
Identity = 139/222 (62.61%), Postives = 174/222 (78.38%), Query Frame = 0


Query: 12  SGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGDMGMA 71
           SG+ +G+E+HNY+  ++  G + + DT+ +GSAYDR+LQS  L+SFNSGE    G +G A
Sbjct: 32  SGVTSGNEVHNYIAQNN--GHQMLNDTKILGSAYDRFLQSAGLTSFNSGEASVIGGVGFA 91

Query: 72  RPVANRMPVGSRMPGPSIPDPVVMSRPPAV--SPDLAPNGRNIEYGNHLPMDSMTRPGRE 131
           R V         +PG S+ DP  M     V   PDL+ NGR++ +G  LP+D+++RPG E
Sbjct: 92  RGV-------GELPGHSLGDPSAMGHLSGVGGGPDLSRNGRDVNFGGQLPIDAVSRPGPE 151

Query: 132 TVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVD 191
           T+PLP DAS+TLYVEGLPSDS++REVAHIFRPFVGY+E+RLV+KESKHRGGDPLILCFVD
Sbjct: 152 TIPLPRDASSTLYVEGLPSDSTKREVAHIFRPFVGYREVRLVAKESKHRGGDPLILCFVD 211

Query: 192 FANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSG 232
           FANPACAATA+SALQGYK+DE +PES+YLRLQFSR PG RSG
Sbjct: 212 FANPACAATALSALQGYKVDEINPESSYLRLQFSRSPGRRSG 244

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BLAST of MS018040 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.4e-73
Identity = 144/227 (63.44%), Postives = 171/227 (75.33%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           E+P+SGLP+G+EMH     +DR G   VKD++TIGSAYDRYLQ  Q+ SF SGE  T G 
Sbjct: 27  EMPASGLPSGNEMHYLSREEDRSGHPMVKDSKTIGSAYDRYLQG-QVPSFTSGEASTVGA 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVM-SRPPAVSPDLAPNGRNIEYGNHLPMDSMTRP 127
           +G+ R +         +P  S+ DP  M  R     PDLAPNGR + YG   PMD ++R 
Sbjct: 87  LGLQRGIGG-------LPNHSLSDPSAMIGRHGGGGPDLAPNGRGMNYGFQPPMDPVSRH 146

Query: 128 GRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILC 187
           G E   LPPDAS TLY+EGLPSD +RREVAHIFRPFVGY+E+RLVSKE+KHR GDPLILC
Sbjct: 147 GPEPALLPPDASPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHR-GDPLILC 206

Query: 188 FVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSG 234
           FVDFANPACAATA+SALQGYK+DE +PES++LRLQFSR+PGPRSG G
Sbjct: 207 FVDFANPACAATALSALQGYKVDEINPESSHLRLQFSRYPGPRSGGG 244

[Close]

BLAST of MS018040 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.6e-63
Identity = 127/223 (56.95%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 14  LPTGHEMHNYLVSD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGDMGMAR 73
           +P+G +MH+YL  D DRG P +VKDT++IGSAYDRYLQS+Q     S E      +GM R
Sbjct: 207 IPSG-DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVR 266

Query: 74  PVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPGRETVP 133
              + M     MPGPS+ + ++     ++  D  PNGR++ +G    +DS+ RPGRE  P
Sbjct: 267 QGGSNM-----MPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHP 326

Query: 134 LPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFAN 193
           LPPD SNTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N
Sbjct: 327 LPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFEN 386

Query: 194 PACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
            ACAATA+SALQ Y+MDE +P+S  LRLQF R+PGPR G   G
Sbjct: 387 SACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRGG 419

[Close]

BLAST of MS018040 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.2e-50
Identity = 119/224 (53.12%), Postives = 141/224 (62.95%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           E PSS +  GH    Y   +D   P    DT+TIGSAYDRYLQSVQ     SGE    G 
Sbjct: 28  EAPSSTMTIGHGGGYYPRDEDLDVP----DTRTIGSAYDRYLQSVQ-----SGE---GGS 87

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           + M R        G  +      D  ++ R   +  D  PNG  I +    P+      G
Sbjct: 88  VSMGRSGGGGGGGGGNV---QTIDDFMLRRGGVLPLDHGPNGHTIGFDPPEPV------G 147

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           R    LP DASNTLYVEGLPS+ SRREVAHIFRPFVGY+E+RLV+K+SKHR GDP++LCF
Sbjct: 148 RRN--LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCF 207

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSG 232
           VDF NPACAATA+SALQGY+MDE + +S +LRLQFSR PG R G
Sbjct: 208 VDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228

[Close]

BLAST of MS018040 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.3e-28
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 120 MDS--MTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKH 179
           MDS  M   GR   PLPPDAS+TLY+EGLP++ +RREV+HIFRPFVG++E+RLV+KES+H
Sbjct: 17  MDSRGMGYGGRPEPPLPPDASSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRH 76

Query: 180 RGGDPLILCFVDFANPACAATAMSALQGYKMDE 211
            GGDP +LCFVDF NPA A  A+ ALQG+  D+
Sbjct: 77  PGGDPHVLCFVDFDNPAQATIALEALQGHVTDD 109

[Close]

BLAST of MS018040 vs. ExPASy TrEMBL
Match: A0A0A0KCN5 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 6.9e-156
Identity = 327/504 (64.88%), Postives = 364/504 (72.22%), Query Frame = 0


Query: 1   ALLSLSAELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSG 60
           ALLSLSAELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SG
Sbjct: 28  ALLSLSAELPASGLSTGHDMHNYLTSDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSG 87

Query: 61  EVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPM 120
           EVPTHG+MGM RPVANRMPVG+RMPGP +PDP+VMSRPPAVSPDLAPNGRN+EYGNHLP+
Sbjct: 88  EVPTHGEMGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNLEYGNHLPV 147

Query: 121 DSMTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGG 180
           DSM+RPGRETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELRLVSKESKHRGG
Sbjct: 148 DSMSRPGRETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGG 207

Query: 181 DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGVQFLF 240
           DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG +   
Sbjct: 208 DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSGGKSGT 267

Query: 241 HCFLLLSHLHGKIHSGTEAGTFRFPASSNAPKSAYFGRHSTHTSMQFPRPSFETQLRLLR 300
                 + L   I     AG +R PASSN PKSAY   HST+ S+  P+      L   R
Sbjct: 268 IVTNRATWLTSAI-----AGIWRVPASSNTPKSAYIVGHSTYESVA-PQKKLHENLVNAR 327

Query: 301 LERN-----------MGC------ATAILIAWVCLNVSTKLSAQHVHPSSPPPAAPPPIV 360
            + N             C        ++L+A V LN+ +K SA + H        PPP+ 
Sbjct: 328 GQVNPSAWSWRKNGFFNCNCIPPFVISLLLALVSLNLPSKFSAAYAH-------YPPPL- 387

Query: 361 SLFPLPPKKHKQLQWSLPPVA-----EPIVPYFPFVY--IPSPSVKPYE-HTSPP---PP 420
                 PKKHKQ   S PPVA     EPIVPYFPFVY  IPSPS KPYE H  PP   P 
Sbjct: 388 ------PKKHKQ---SEPPVAQPFVSEPIVPYFPFVYVPIPSPSEKPYEPHPPPPLKQPQ 447

Query: 421 SPVA-VAEPIVPYFPFVYI--PSPSVKPYEHTSPSPPSPVAVAEPIVPYFPFTFTPSPSE 474
           SP++  + P+VPYFPFVY+  PSPS KP E  +PSP   +    P+VPY+ F F+P PS 
Sbjct: 448 SPLSPSSNPLVPYFPFVYVPLPSPSQKPCEVAAPSP--SLVFTRPVVPYYLFRFSP-PSP 505

[Close]

BLAST of MS018040 vs. ExPASy TrEMBL
Match: A0A6J1CKA2 (RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 4.2e-129
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD
Sbjct: 27  ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG
Sbjct: 87  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 254

[Close]

BLAST of MS018040 vs. ExPASy TrEMBL
Match: A0A1S3B4F0 (RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 9.4e-121
Identity = 211/227 (92.95%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           ELP+SGL TGH+MHNYL SDDRGGPR+VKDTQTIGSAYDRYLQSVQLSSF SGEVPTHG+
Sbjct: 27  ELPASGLSTGHDMHNYLASDDRGGPRSVKDTQTIGSAYDRYLQSVQLSSFTSGEVPTHGE 86

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           MGM RPVANRMPVG+RMPGP +PDP+VMSRPPAVSPDLAPNGRNIEYGNHLP+DSM+RPG
Sbjct: 87  MGMGRPVANRMPVGNRMPGPLLPDPIVMSRPPAVSPDLAPNGRNIEYGNHLPVDSMSRPG 146

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           RETVPLPPDASNTLYVEGLP DSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF
Sbjct: 147 RETVPLPPDASNTLYVEGLPPDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 206

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGS 235
           VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSG GS
Sbjct: 207 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGFGS 253

[Close]

BLAST of MS018040 vs. ExPASy TrEMBL
Match: A0A6J1JZU6 (RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489771 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 1.2e-118
Identity = 211/235 (89.79%), Postives = 222/235 (94.47%), Query Frame = 0


Query: 1   ALLSLSAELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSG 60
           ALLSLS+E PSSGLP  HEMHNY+ +DD GGPRAVKDTQTIGSAYDRYLQSVQLSSF SG
Sbjct: 25  ALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQLSSFTSG 84

Query: 61  EVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPM 120
           EVPTHG+MGM RP+ANRMP+G+RMPGP +PDPVVMSRP AVSPDLA NGRNIEYGNHLP+
Sbjct: 85  EVPTHGEMGMGRPLANRMPIGNRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYGNHLPV 144

Query: 121 DSMTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGG 180
           DS  RP RETVPLPPDA+NTLYVEGLPSDSSRREVAHIFRPFVGYKELRLV+KESKHRGG
Sbjct: 145 DSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGG 204

Query: 181 DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
           DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG
Sbjct: 205 DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 259

[Close]

BLAST of MS018040 vs. ExPASy TrEMBL
Match: A0A6J1FKI7 (RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444852 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.8e-116
Identity = 208/235 (88.51%), Postives = 219/235 (93.19%), Query Frame = 0


Query: 1   ALLSLSAELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSG 60
           ALLSLS+E PSSGLP  HEMHNY+ +DD GGPRAVKDTQTIGSAYDRYLQSVQ SSF SG
Sbjct: 25  ALLSLSSEPPSSGLPAVHEMHNYIANDDHGGPRAVKDTQTIGSAYDRYLQSVQPSSFTSG 84

Query: 61  EVPTHGDMGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPM 120
           EVPTHG+MGM RP+ANRMP+ +RMPGP +PDPVVMSRP AVSPDLA NGRNIEY NHLP+
Sbjct: 85  EVPTHGEMGMGRPLANRMPIANRMPGPLLPDPVVMSRPLAVSPDLALNGRNIEYSNHLPV 144

Query: 121 DSMTRPGRETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGG 180
           DS  RP RETVPLPPDA+NTLYVEGLPSDSSRREVAHIFRPFVGYKELRLV+KESKHRGG
Sbjct: 145 DSTNRPIRETVPLPPDATNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVTKESKHRGG 204

Query: 181 DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
           DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG
Sbjct: 205 DPLILCFVDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 259

[Close]

BLAST of MS018040 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 243.0 bits (619), Expect = 4.7e-64
Identity = 127/223 (56.95%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 14  LPTGHEMHNYLVSD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGDMGMAR 73
           +P+G +MH+YL  D DRG P +VKDT++IGSAYDRYLQS+Q     S E      +GM R
Sbjct: 207 IPSG-DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVR 266

Query: 74  PVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPGRETVP 133
              + M     MPGPS+ + ++     ++  D  PNGR++ +G    +DS+ RPGRE  P
Sbjct: 267 QGGSNM-----MPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHP 326

Query: 134 LPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFAN 193
           LPPD SNTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N
Sbjct: 327 LPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFEN 386

Query: 194 PACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
            ACAATA+SALQ Y+MDE +P+S  LRLQF R+PGPR G   G
Sbjct: 387 SACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRGG 419

[Close]

BLAST of MS018040 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 243.0 bits (619), Expect = 4.7e-64
Identity = 127/223 (56.95%), Postives = 161/223 (72.20%), Query Frame = 0


Query: 14  LPTGHEMHNYLVSD-DRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGDMGMAR 73
           +P+G +MH+YL  D DRG P +VKDT++IGSAYDRYLQS+Q     S E      +GM R
Sbjct: 39  IPSG-DMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVR 98

Query: 74  PVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPGRETVP 133
              + M     MPGPS+ + ++     ++  D  PNGR++ +G    +DS+ RPGRE  P
Sbjct: 99  QGGSNM-----MPGPSMGE-LMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHP 158

Query: 134 LPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFAN 193
           LPPD SNTLYVEGLPS+ SRREV+HIFRPFVGY+E+RLV+++SKHR GDP +LCFVDF N
Sbjct: 159 LPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFEN 218

Query: 194 PACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSGSGSG 236
            ACAATA+SALQ Y+MDE +P+S  LRLQF R+PGPR G   G
Sbjct: 219 SACAATALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQRGG 251

[Close]

BLAST of MS018040 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 201.4 bits (511), Expect = 1.6e-51
Identity = 119/224 (53.12%), Postives = 141/224 (62.95%), Query Frame = 0


Query: 8   ELPSSGLPTGHEMHNYLVSDDRGGPRAVKDTQTIGSAYDRYLQSVQLSSFNSGEVPTHGD 67
           E PSS +  GH    Y   +D   P    DT+TIGSAYDRYLQSVQ     SGE    G 
Sbjct: 28  EAPSSTMTIGHGGGYYPRDEDLDVP----DTRTIGSAYDRYLQSVQ-----SGE---GGS 87

Query: 68  MGMARPVANRMPVGSRMPGPSIPDPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPG 127
           + M R        G  +      D  ++ R   +  D  PNG  I +    P+      G
Sbjct: 88  VSMGRSGGGGGGGGGNV---QTIDDFMLRRGGVLPLDHGPNGHTIGFDPPEPV------G 147

Query: 128 RETVPLPPDASNTLYVEGLPSDSSRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCF 187
           R    LP DASNTLYVEGLPS+ SRREVAHIFRPFVGY+E+RLV+K+SKHR GDP++LCF
Sbjct: 148 RRN--LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCF 207

Query: 188 VDFANPACAATAMSALQGYKMDEQDPESNYLRLQFSRHPGPRSG 232
           VDF NPACAATA+SALQGY+MDE + +S +LRLQFSR PG R G
Sbjct: 208 VDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228

[Close]

BLAST of MS018040 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 3.5e-43
Identity = 87/141 (61.70%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 91  DPVVMSRPPAVSPDLAPNGRNIEYGNHLPMDSMTRPGRETVPLPPDASNTLYVEGLPSDS 150
           D  ++ R   +  D  PNG  I +    P+      GR    LP DASNTLYVEGLPS+ 
Sbjct: 42  DDFMLRRGGVLPLDHGPNGHTIGFDPPEPV------GRRN--LPSDASNTLYVEGLPSNC 101

Query: 151 SRREVAHIFRPFVGYKELRLVSKESKHRGGDPLILCFVDFANPACAATAMSALQGYKMDE 210
           SRREVAHIFRPFVGY+E+RLV+K+SKHR GDP++LCFVDF NPACAATA+SALQGY+MDE
Sbjct: 102 SRREVAHIFRPFVGYREVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDE 161

Query: 211 QDPESNYLRLQFSRHPGPRSG 232
            + +S +LRLQFSR PG R G
Sbjct: 162 NESDSKFLRLQFSRKPGSRPG 174

[Close]

BLAST of MS018040 vs. TAIR 10
Match: AT1G26240.1 (Proline-rich extensin-like family protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-06
Identity = 57/160 (35.62%), Postives = 74/160 (46.25%), Query Frame = 0


Query: 328 HVHPSSPPPA----APPPIVSLFPLPPKKHKQLQWSLPPVAEPIVPYFPFVYIPSPSVKP 387
           +V+ S PPP     +PPP   ++  PP          PP      P  P+VY  SP   P
Sbjct: 325 YVYKSPPPPPYVYNSPPPPPYVYKSPPP---------PPYVYSSPPPSPYVY-KSPPPPP 384

Query: 388 YEHTSPPPPSPVAVAEPIVPYF-------PFVYIPSPSVKPYEHTSPSPPSPVAVAEPIV 447
           Y ++SPPPP  V  + P  PY        P+VY  SP   PY ++SP PP  V  + P  
Sbjct: 385 YVYSSPPPPPYVYKSPPPPPYVYSSPPPPPYVY-KSPPPPPYVYSSPPPPPYVYKSPPPP 444

Query: 448 PYF-------PFTF-TPSPSEEPYEHTPPPPSAKRPYRSP 469
           PY        P+ + +PSP    Y+  PPPPS    Y SP
Sbjct: 445 PYVYSSPPPPPYVYKSPSPPPYVYKSPPPPPSYSYSYSSP 473

The following BLAST results are available for this feature:

BLAST of MS018040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141348.1	8.7e-129	100.00	RNA-binding protein 2-like [Momordica charantia]	[more]
XP_038884976.1	6.1e-122	93.86	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]
XP_031743537.1	7.9e-122	88.80	RNA-binding protein 2 isoform X3 [Cucumis sativus]	[more]
XP_031743540.1	7.9e-122	88.80	RNA-binding protein 2 isoform X6 [Cucumis sativus]	[more]
XP_031743541.1	1.3e-121	92.98	RNA-binding protein 2 isoform X7 [Cucumis sativus]	[more]

BLAST of MS018040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
G7ID19	8.3e-74	62.61	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
Q8H0P8	5.4e-73	63.44	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
F4HWF9	6.6e-63	56.95	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
A1A6K6	2.2e-50	53.13	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
Q6JB11	5.3e-28	64.52	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of MS018040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCN5	6.9e-156	64.88	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G338020 PE=4 SV...	[more]
A0A6J1CKA2	4.2e-129	100.00	RNA-binding protein 2-like OS=Momordica charantia OX=3673 GN=LOC111011769 PE=4 S...	[more]
A0A1S3B4F0	9.4e-121	92.95	RNA-binding protein 2 OS=Cucumis melo OX=3656 GN=LOC103485638 PE=4 SV=1	[more]
A0A6J1JZU6	1.2e-118	89.79	RNA-binding protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148977...	[more]
A0A6J1FKI7	1.8e-116	88.51	RNA-binding protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444...	[more]

BLAST of MS018040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21320.1	4.7e-64	56.95	nucleotide binding;nucleic acid binding	[more]
AT1G21320.2	4.7e-64	56.95	nucleotide binding;nucleic acid binding	[more]
AT1G76940.1	1.6e-51	53.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	3.5e-43	61.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G26240.1	2.0e-06	35.63	Proline-rich extensin-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 140..216 e-value: 1.4E-4 score: 31.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 141..209 e-value: 1.6E-8 score: 34.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 139..225 score: 11.639343
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 135..226 e-value: 7.1E-18 score: 66.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..474
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..474
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 8..234
None	No IPR available	PANTHER	PTHR10501:SF53	NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATED	coord: 8..234
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 139..221 e-value: 3.81373E-33 score: 118.526
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 114..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS018040.1	MS018040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding