MS018031 (gene) Bitter gourd (TR) v1

Overview
NameMS018031
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDomain of unknown function (DUF303)
Locationscaffold1336: 11080 .. 11211 (+)
RNA-Seq ExpressionMS018031
SyntenyMS018031
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGATAGGTCTCATTCAGTGTGCCATTGGAGGAACCCACTGGAAAGAAGGGAGGAAAGGAACTCATAATTACACCAGATTGATCAAACAGATTAAAACTTCAGAAAAACGTGGGGGAAAGTCCAAGGAGATC

mRNA sequence

GTGATAGGTCTCATTCAGTGTGCCATTGGAGGAACCCACTGGAAAGAAGGGAGGAAAGGAACTCATAATTACACCAGATTGATCAAACAGATTAAAACTTCAGAAAAACGTGGGGGAAAGTCCAAGGAGATC

Coding sequence (CDS)

GTGATAGGTCTCATTCAGTGTGCCATTGGAGGAACCCACTGGAAAGAAGGGAGGAAAGGAACTCATAATTACACCAGATTGATCAAACAGATTAAAACTTCAGAAAAACGTGGGGGAAAGTCCAAGGAGATC

Protein sequence

VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSKEI
Homology
BLAST of MS018031 vs. NCBI nr
Match: XP_022141846.1 (probable carbohydrate esterase At4g34215 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 5.6e-06
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGK 41
           VIGL+ CAIGGTH +E  KGT NYTRL+ +IK SE +GGK
Sbjct: 118 VIGLVPCAIGGTHLREWVKGTQNYTRLVNRIKASEAQGGK 157

BLAST of MS018031 vs. NCBI nr
Match: XP_022141681.1 (probable carbohydrate esterase At4g34215 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGK 41
           VIGL+ CAIGGTH +E  KGT  YT+LI +IK SEK GGK
Sbjct: 104 VIGLVPCAIGGTHLREWIKGTAYYTKLIDRIKASEKHGGK 143

BLAST of MS018031 vs. NCBI nr
Match: XP_038885906.1 (probable carbohydrate esterase At4g34215 [Benincasa hispida])

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGK 41
           VIGL+ CAIGG+H KE  KGT  Y  L+++IK SEK GGK
Sbjct: 105 VIGLVPCAIGGSHLKEWVKGTDRYANLVERIKASEKNGGK 144

BLAST of MS018031 vs. NCBI nr
Match: XP_022939276.1 (probable carbohydrate esterase At4g34215 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 2   IGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSK 43
           IGL+ CAIGG+H +E  KGT+ YT+L++++K SE+ GGK K
Sbjct: 98  IGLVPCAIGGSHLREWVKGTNRYTKLVERMKRSEEHGGKVK 138

BLAST of MS018031 vs. NCBI nr
Match: KAG7016422.1 (putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.1 bits (126), Expect = 6.9e-04
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 2   IGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSK 43
           IGL+ CAIGG+H +E  KGT  YT+L++++K SE+ GGK K
Sbjct: 98  IGLVPCAIGGSHLREWVKGTDRYTKLVERMKRSEEHGGKVK 138

BLAST of MS018031 vs. ExPASy Swiss-Prot
Match: Q8L9J9 (Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana OX=3702 GN=At4g34215 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 6.5e-05
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSKEI 45
           VIGL+ CA GGT  KE  +G+H Y R++K+ + S K GG+ K +
Sbjct: 112 VIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAV 155

BLAST of MS018031 vs. ExPASy TrEMBL
Match: A0A6J1CKF9 (probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC111012113 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.7e-06
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGK 41
           VIGL+ CAIGGTH +E  KGT NYTRL+ +IK SE +GGK
Sbjct: 118 VIGLVPCAIGGTHLREWVKGTQNYTRLVNRIKASEAQGGK 157

BLAST of MS018031 vs. ExPASy TrEMBL
Match: A0A6J1CJZ1 (probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC111011984 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGK 41
           VIGL+ CAIGGTH +E  KGT  YT+LI +IK SEK GGK
Sbjct: 104 VIGLVPCAIGGTHLREWIKGTAYYTKLIDRIKASEKHGGK 143

BLAST of MS018031 vs. ExPASy TrEMBL
Match: A0A6J1FFF9 (probable carbohydrate esterase At4g34215 OS=Cucurbita moschata OX=3662 GN=LOC111445241 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.0e-04
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 2   IGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSK 43
           IGL+ CAIGG+H +E  KGT+ YT+L++++K SE+ GGK K
Sbjct: 98  IGLVPCAIGGSHLREWVKGTNRYTKLVERMKRSEEHGGKVK 138

BLAST of MS018031 vs. ExPASy TrEMBL
Match: A0A6J1K1G7 (probable carbohydrate esterase At4g34215 OS=Cucurbita maxima OX=3661 GN=LOC111489769 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-04
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 2   IGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSK 43
           IGL+ CAIGG+H +E  KGT  YT+L++++K SE+ GGK K
Sbjct: 98  IGLVPCAIGGSHLREWVKGTDRYTKLVERMKRSEEHGGKVK 138

BLAST of MS018031 vs. ExPASy TrEMBL
Match: A0A5D3CGI9 (Putative carbohydrate esterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00750 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-04
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 2   IGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSK 43
           IGL+ CAIGG+H KE  KGT  Y  L+++I+ SEK GGK K
Sbjct: 106 IGLVPCAIGGSHLKEWVKGTDRYDNLVERIRASEKDGGKVK 146

BLAST of MS018031 vs. TAIR 10
Match: AT4G34215.1 (Domain of unknown function (DUF303) )

HSP 1 Score: 47.0 bits (110), Expect = 4.6e-06
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSKEI 45
           VIGL+ CA GGT  KE  +G+H Y R++K+ + S K GG+ K +
Sbjct: 112 VIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAV 155

BLAST of MS018031 vs. TAIR 10
Match: AT4G34215.2 (Domain of unknown function (DUF303) )

HSP 1 Score: 47.0 bits (110), Expect = 4.6e-06
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 0

Query: 1   VIGLIQCAIGGTHWKEGRKGTHNYTRLIKQIKTSEKRGGKSKEI 45
           VIGL+ CA GGT  KE  +G+H Y R++K+ + S K GG+ K +
Sbjct: 112 VIGLVPCASGGTAIKEWERGSHLYERMVKRTEESRKCGGEIKAV 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141846.15.6e-0667.50probable carbohydrate esterase At4g34215 [Momordica charantia][more]
XP_022141681.14.8e-0567.50probable carbohydrate esterase At4g34215 [Momordica charantia][more]
XP_038885906.11.4e-0462.50probable carbohydrate esterase At4g34215 [Benincasa hispida][more]
XP_022939276.14.0e-0456.10probable carbohydrate esterase At4g34215 [Cucurbita moschata][more]
KAG7016422.16.9e-0456.10putative carbohydrate esterase, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
Match NameE-valueIdentityDescription
Q8L9J96.5e-0547.73Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana OX=3702 GN=At4g... [more]
Match NameE-valueIdentityDescription
A0A6J1CKF92.7e-0667.50probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1CJZ12.3e-0567.50probable carbohydrate esterase At4g34215 OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1FFF92.0e-0456.10probable carbohydrate esterase At4g34215 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1K1G73.3e-0456.10probable carbohydrate esterase At4g34215 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A5D3CGI95.7e-0458.54Putative carbohydrate esterase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
AT4G34215.14.6e-0647.73Domain of unknown function (DUF303) [more]
AT4G34215.24.6e-0647.73Domain of unknown function (DUF303) [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005181Sialate O-acetylesterase domainPFAMPF03629SASAcoord: 1..36
e-value: 6.3E-6
score: 26.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS018031.1MS018031.1mRNA