MS017949 (gene) Bitter gourd (TR) v1

Overview
NameMS017949
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description4a-hydroxytetrahydrobiopterin dehydratase
Locationscaffold373: 4082769 .. 4082858 (+)
RNA-Seq ExpressionMS017949
SyntenyMS017949
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGGATTGAGTATGAACGATTTTATTGTAGCTGCAAAACTTGATGAGATAAGAACATCAGATCTTGCTCCCAGGAAAAGAGTTTGGGCA

mRNA sequence

GGGGGATTGAGTATGAACGATTTTATTGTAGCTGCAAAACTTGATGAGATAAGAACATCAGATCTTGCTCCCAGGAAAAGAGTTTGGGCA

Coding sequence (CDS)

GGGGGATTGAGTATGAACGATTTTATTGTAGCTGCAAAACTTGATGAGATAAGAACATCAGATCTTGCTCCCAGGAAAAGAGTTTGGGCA

Protein sequence

GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA
Homology
[Close]
BLAST of MS017949 vs. NCBI nr
Match: XP_022156424.1 (uncharacterized protein LOC111023314 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA
Sbjct: 192 GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 221

[Close]
BLAST of MS017949 vs. NCBI nr
Match: XP_030491524.1 (probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Cannabis sativa] >KAF4362893.1 hypothetical protein G4B88_014230 [Cannabis sativa] >KAF4380043.1 hypothetical protein F8388_018167 [Cannabis sativa])

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEI+TSDLAPRKRVWA
Sbjct: 181 GGLSMNDFIVAAKLDEIKTSDLAPRKRVWA 210

[Close]
BLAST of MS017949 vs. NCBI nr
Match: XP_010109163.1 (uncharacterized protein LOC21400124 [Morus notabilis] >EXC21092.1 Putative pterin-4-alpha-carbinolamine dehydratase [Morus notabilis])

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEI+TSDLAPRKRVWA
Sbjct: 187 GGLSMNDFIVAAKLDEIKTSDLAPRKRVWA 216

[Close]
BLAST of MS017949 vs. NCBI nr
Match: XP_006437027.1 (uncharacterized protein LOC18044161 [Citrus clementina] >ESR50267.1 hypothetical protein CICLE_v10032722mg [Citrus clementina])

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLD+IRTSDLAPRKR+WA
Sbjct: 187 GGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216

[Close]
BLAST of MS017949 vs. NCBI nr
Match: KDO57703.1 (hypothetical protein CISIN_1g027937mg [Citrus sinensis])

HSP 1 Score: 62.4 bits (150), Expect = 7.7e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLD+IRTSDLAPRKR+WA
Sbjct: 187 GGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216

[Close]
BLAST of MS017949 vs. ExPASy Swiss-Prot
Match: Q9LU63 (Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ATP1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-08
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFI+AAK+D+I+TSDL+PRKR WA
Sbjct: 191 GGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 220

[Close]
BLAST of MS017949 vs. ExPASy TrEMBL
Match: A0A6J1DTF1 (4a-hydroxytetrahydrobiopterin dehydratase OS=Momordica charantia OX=3673 GN=LOC111023314 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA
Sbjct: 192 GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 221

[Close]
BLAST of MS017949 vs. ExPASy TrEMBL
Match: A0A7J6GAR3 (4a-hydroxytetrahydrobiopterin dehydratase OS=Cannabis sativa OX=3483 GN=F8388_018167 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEI+TSDLAPRKRVWA
Sbjct: 181 GGLSMNDFIVAAKLDEIKTSDLAPRKRVWA 210

[Close]
BLAST of MS017949 vs. ExPASy TrEMBL
Match: A0A803P198 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEI+TSDLAPRKRVWA
Sbjct: 181 GGLSMNDFIVAAKLDEIKTSDLAPRKRVWA 210

[Close]
BLAST of MS017949 vs. ExPASy TrEMBL
Match: W9S9P2 (4a-hydroxytetrahydrobiopterin dehydratase OS=Morus notabilis OX=981085 GN=L484_017103 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLDEI+TSDLAPRKRVWA
Sbjct: 187 GGLSMNDFIVAAKLDEIKTSDLAPRKRVWA 216

[Close]
BLAST of MS017949 vs. ExPASy TrEMBL
Match: A0A067ERK0 (4a-hydroxytetrahydrobiopterin dehydratase OS=Citrus sinensis OX=2711 GN=CISIN_1g027937mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.7e-07
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFIVAAKLD+IRTSDLAPRKR+WA
Sbjct: 187 GGLSMNDFIVAAKLDQIRTSDLAPRKRIWA 216

[Close]
BLAST of MS017949 vs. TAIR 10
Match: AT5G51110.1 (Transcriptional coactivator/pterin dehydratase )

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-09
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFI+AAK+D+I+TSDL+PRKR WA
Sbjct: 191 GGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 220

[Close]
BLAST of MS017949 vs. TAIR 10
Match: AT5G51110.2 (Transcriptional coactivator/pterin dehydratase )

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-09
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 1   GGLSMNDFIVAAKLDEIRTSDLAPRKRVWA 31
           GGLSMNDFI+AAK+D+I+TSDL+PRKR WA
Sbjct: 164 GGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 193

The following BLAST results are available for this feature:
BLAST of MS017949 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156424.12.7e-07100.00uncharacterized protein LOC111023314 [Momordica charantia][more]
XP_030491524.15.9e-0796.67probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic [Cannabis sativ... [more]
XP_010109163.15.9e-0796.67uncharacterized protein LOC21400124 [Morus notabilis] >EXC21092.1 Putative pteri... [more]
XP_006437027.17.7e-0793.33uncharacterized protein LOC18044161 [Citrus clementina] >ESR50267.1 hypothetical... [more]
KDO57703.17.7e-0793.33hypothetical protein CISIN_1g027937mg [Citrus sinensis][more]
BLAST of MS017949 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LU634.3e-0880.00Probable pterin-4-alpha-carbinolamine dehydratase, chloroplastic OS=Arabidopsis ... [more]
BLAST of MS017949 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DTF11.3e-07100.004a-hydroxytetrahydrobiopterin dehydratase OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A7J6GAR32.9e-0796.674a-hydroxytetrahydrobiopterin dehydratase OS=Cannabis sativa OX=3483 GN=F8388_01... [more]
A0A803P1982.9e-0796.67Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
W9S9P22.9e-0796.674a-hydroxytetrahydrobiopterin dehydratase OS=Morus notabilis OX=981085 GN=L484_0... [more]
A0A067ERK03.7e-0793.334a-hydroxytetrahydrobiopterin dehydratase OS=Citrus sinensis OX=2711 GN=CISIN_1g... [more]
BLAST of MS017949 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51110.13.0e-0980.00Transcriptional coactivator/pterin dehydratase [more]
AT5G51110.23.0e-0980.00Transcriptional coactivator/pterin dehydratase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017949.1MS017949.1mRNA