MS017941 (gene) Bitter gourd (TR) v1

Overview
NameMS017941
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionU6 snRNA phosphodiesterase
Locationscaffold373: 3978093 .. 3980874 (-)
RNA-Seq ExpressionMS017941
SyntenyMS017941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGCCAGACTTGTCGCCGCCGCCGCCGCCGCCTCCGTCTCTGCCACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTGTATGCCTCTTCTCTCTGCCTTACAGTTACATTATGCTCTTCTTACCTTTTCATTTCTTACTCTTTAACTTCGCTCATCGACTCTATCAATATTTTCTTCTTAAGCCGCGTTACATGACTTACCAAATGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAAACTATGCCCTACACGTCTATATTCCAGGTCTTTCCCATTTATCCCTTTTCAGTTGCATTCATCATAAGTGAAGCTATGTAGTTCGTCAAATTTGATTCTTAAAACCTACCTTTTCCACTTTTCCAGTTTAATCTTACTGAAAGGGGCTTTTCTCCTTTTGTTGCTTATTCAGAAATCATTTATTATTAGTTGGAAGTGTAGCTACGATTATGGGGAGCTTCCCTTTAGTTGATCATTATTAAGTATTAAGGAGATTCTAACAGTTATGGTGCCCTGTTCTTATCATTTTCTTCTGCTGCTTTACTTTTTTGGAAAGTTCACTCCCACGATCTCTTGTTTATGGCTACTCTTACTGTGCTGGTTTCTTTTTCCTTGAGTAAATATATGTTGATTTAAATTTGGTTTTTCACATTTCCTCTAGTAAAAATGGACAATATCTGTGACAATTTGCTAATATGTACTAGAATTTTTCAACATTATCTATTATTCTAATACTTGATAATGATATATATAGAATAAATATATTTGTGCAATGATATTGATTGCTTAATATATTTGCTTTCCTCAATTGATTTCCATGCTTTCTTGTCTGATTTTTAGTCTGCTGCCAACTCATGCACTTAGAAGTGCAGTCAAATGAGGAAAAAGATATTTCCTACATAAAAGGAAATAGATTTTTTAGTGTTCTTTATTTTCGTCTATGTGGTCAATCTTATTTAATTGGACTCAAGCAACTCTTATTGGGATTTTCCATTTGTTGTATGTAATACAATGACCTTTCCAATGAATACTACATATGGCTATACATATTTTGTTTTTCATATTCCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTTGATATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCACCAGATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGGTAAGCTAGAAATTCTTCATTTAGTTTGATTAGTGGCTGTTGAATTTCCAATTTGTTTTTAATTTTTACTCAAGTACTTTTTGGTTTTGAGCAGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGACCTTCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGGTGCGTGAGATTTGATGGATTACCTTACCATTTCCATTGTCTTAGCATTTCTAGCGTAGAGGTCTCTTTAACATTCTCAAATTTTGGGCTGATAATATTGTAACTTCCGCTTCTACTAAATATGCATTTAAGCTCATATTAGTTTCTATATCACTAGTCCAAGAAGGAATTAGGTTATAGTTAACTCTTTACCTGATCTCATATGGGTTTGGTCTTCATATTGATTTAAAAAGCTGATGCATAGACTTGGACTAGAAGCTTTAAATAGATCAAATGATTTGAACTCAAAATTTTTCTGCTTTGCTATGTCAAAAGATTGAAAGATTACACTTTTGTTTTGTGGAATTTGTTGAAATGTGCCTAGACTAGCTTTGGATTGATAGTATCGAATATTCATACATCATGCACATAAATATGTTTCCTTGTCAACCAAATGTAGTAGGGTCAGGGGCCAAGGGTCAGGTGGTTGGCCCGTAAATAGTTGAGGTGCGCGCAAGCTGGCCCAGACACACGGATATTAAAAAAAAAAAGTTTTACCCTTTCATGTTGTCCAACAAATGAAATATTGGAAAATAGGATCGAGTTGGCAATTACATCATGTGATAGAAATTTTCTGAAGTGCTTATAGTGCCGCTATTCTCCTAACACTCTCTCATGTGATGTTTTGAAATTGCAAGAAGTTGTATATACTTGTAATTTGTCAACAAGGCCACCCTTGTTTGTTTGGTCATCTTTTTTTGGGATCTTTTGACATTAAATTATGATGATTTCATCTAAGTTTTACATTTACACGATTGGGATTGAAAATACTCAATAGAAGCAAAAGTAATCATTTTTTTCCCTCGACTGATTGCAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGTTAGTTCCTTTGGTATTTTCTGTCCCTTTCCATCTTTAACTAGAAAGATGACCTTTTGGACTTCTATTTTGTAGGAAGAGAGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGTCCTCCATGGCACCATCAAAGAGATGTATTTTCACCACTAAATTCAGTGGCATTGAATGTAAGATTGGTAAAAAAACGTATAAAATATGTAAATCTCCAGATGAA

mRNA sequence

ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGCCAGACTTGTCGCCGCCGCCGCCGCCGCCTCCGTCTCTGCCACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTCCGCGTTACATGACTTACCAAATGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAAACTATGCCCTACACGTCTATATTCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTTGATATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCACCAGATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGACCTTCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGAGAGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGTCCTCCATGGCACCATCAAAGAGATGTATTTTCACCACTAAATTCAGTGGCATTGAATGTAAGATTGGTAAAAAAACGTATAAAATATGTAAATCTCCAGATGAA

Coding sequence (CDS)

ATGGATGCTCTGAAGGCCTCGTATAGAGGCAGCTCGTCGGATGAAGAAGACGACATAGTCTCAACTGCACCGCCAGACTTGTCGCCGCCGCCGCCGCCGCCTCCGTCTCTGCCACCGCCGCCTCTCTCGCTTCTCGATTTTCCCAATTCCATCTCCGCGTTACATGACTTACCAAATGCTCAGCCCACTAGATTTCGGAGCTTCCCTCATGTTGAAGGAAACTATGCCCTACACGTCTATATTCCAGTTTATATACCAACTACATCAAAGAAGGAGGTGGTCCTGTTTTTGAAGAAAGTCTCCTCACTTGTGCCCTCTCTCCATCTTGTTGATATTGACGTTCCTTTGACCTCTTTATGCAAAGATGAGCACAAGCTTGAGCAAGCCTTGGCCAGAGAATTTCACATAAGTTTATCAAGAACAGTGCCAATCCGAGTGCACCAGATTGACTCAATAGTGTCAATGCTTCGTCAGAAGCTTCAGTGTCAAAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGACTTTTGTTAATGATGACCTCTCTCGGACCTTCCTGTCAATGGAAATTATCGCTGGAGGGCTAATGGAGATAAGAAAACAGATTCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGAGAGGCCACATATATCCTTAGCCTGGGCATTAGGTGACCTTAGTAAATTATTGAGTCGTGTAGTTGACGACAAAATGAAGAGGTCCTCCATGGCACCATCAAAGAGATGTATTTTCACCACTAAATTCAGTGGCATTGAATGTAAGATTGGTAAAAAAACGTATAAAATATGTAAATCTCCAGATGAA

Protein sequence

MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
Homology
BLAST of MS017941 vs. NCBI nr
Match: XP_022155865.1 (U6 snRNA phosphodiesterase [Momordica charantia])

HSP 1 Score: 545.0 bits (1403), Expect = 3.7e-151
Identity = 279/283 (98.59%), Postives = 279/283 (98.59%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNA 60
           MDALKASYRGSSSDEEDDIVSTAP DLS PPPPPPSLPPPPLSLLDFPNSISALHDLP A
Sbjct: 1   MDALKASYRGSSSDEEDDIVSTAPSDLS-PPPPPPSLPPPPLSLLDFPNSISALHDLPIA 60

Query: 61  QPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLC 120
           QPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLC
Sbjct: 61  QPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLC 120

Query: 121 KDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDD 180
           KDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDD
Sbjct: 121 KDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDD 180

Query: 181 LSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSR 240
           LSRTFLSMEIIAGGLMEIRKQIQVVNEVYK HNLPEFYKEERPHISLAWALGDLSKLLSR
Sbjct: 181 LSRTFLSMEIIAGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSR 240

Query: 241 VVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           VVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
Sbjct: 241 VVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE 282

BLAST of MS017941 vs. NCBI nr
Match: XP_023549871.1 (U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426.0 bits (1094), Expect = 2.5e-115
Identity = 226/293 (77.13%), Postives = 245/293 (83.62%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAP---------PDLSPPPPPPPSLPPPPLSLLDFPNSI 60
           M+AL ASY GSSSDE+ D VS +          P LS        LPPPPLSLLDFPNS 
Sbjct: 1   MEALMASYGGSSSDEDVDTVSPSSASASASASLPQLSDETESFLPLPPPPLSLLDFPNST 60

Query: 61  SALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVD 120
           SAL DLP  Q  R RSFPHV+GNYA+H+YIPVYIPT ++KEV LFLKK+S LVP+LHLVD
Sbjct: 61  SALDDLPIGQAARVRSFPHVQGNYAVHLYIPVYIPTNARKEVALFLKKLSKLVPALHLVD 120

Query: 121 IDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFS 180
           ID+PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFS
Sbjct: 121 IDIPLDILCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFS 180

Query: 181 KWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWAL 240
           KWETFVNDDLSRTFLSMEIIAGGLMEIRK IQVVNEVYKLHNLPEFYKE RPHISLAWAL
Sbjct: 181 KWETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNLPEFYKEGRPHISLAWAL 240

Query: 241 GDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           GDLSKLLS+ V D+MK+S +   SKRCIFT KF+GIECKIGKK +KICK PDE
Sbjct: 241 GDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKKMFKICKFPDE 293

BLAST of MS017941 vs. NCBI nr
Match: XP_038875354.1 (U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida])

HSP 1 Score: 425.2 bits (1092), Expect = 4.3e-115
Identity = 226/291 (77.66%), Postives = 242/291 (83.16%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIV-------STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISA 60
           MDAL+ASY GSSSDEE D V       S + P LS        LPPP  SLL FPNS S 
Sbjct: 1   MDALRASYGGSSSDEEADTVSPSSASTSASTPQLSDETVSFLPLPPPSPSLLHFPNSTSI 60

Query: 61  LHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDID 120
           L DLP  Q TR RSFPHV+GNYALH+YIPVY+PT  +KEV LFLKKVSSLVP+LHLVDID
Sbjct: 61  LDDLPIDQATRVRSFPHVQGNYALHLYIPVYVPTNGRKEVALFLKKVSSLVPALHLVDID 120

Query: 121 VPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKW 180
           VPL  LCKD+HKLEQALAREFH+SLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKW
Sbjct: 121 VPLDVLCKDDHKLEQALAREFHVSLSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKW 180

Query: 181 ETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGD 240
           ETFVNDDLSRTFLSMEII GGLMEIRKQIQ+VNEVYKLHNLPEFYKE RPHISLAWA+GD
Sbjct: 181 ETFVNDDLSRTFLSMEIITGGLMEIRKQIQIVNEVYKLHNLPEFYKEARPHISLAWAIGD 240

Query: 241 LSKLLSRVVDDKMKRSS-MAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           LSKLLS+ V ++MK S+ M   KRCIFTTKF GIECKIGKK YKICK PDE
Sbjct: 241 LSKLLSQAVHNEMKSSAVMQTLKRCIFTTKFKGIECKIGKKIYKICKFPDE 291

BLAST of MS017941 vs. NCBI nr
Match: XP_008467330.1 (PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.6e-114
Identity = 221/289 (76.47%), Postives = 244/289 (84.43%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIV-----STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALH 60
           MDAL+ASY GSSSDEE D V     ST+ P           LPPPPLSLL+FPNS   L 
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPSSASTSTPQFFDETVSSLPLPPPPLSLLNFPNSTCVLD 60

Query: 61  DLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVP 120
           DLP  Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV LF+KK+SSLVP+LHLVDID+P
Sbjct: 61  DLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDIDIP 120

Query: 121 LTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWET 180
           L  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWET
Sbjct: 121 LDVLCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWET 180

Query: 181 FVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLS 240
           FVNDDLSRTFLSMEII GGLMEIRKQIQVVNEVYKLHNLPEFYKE RPHISLAWALGD+S
Sbjct: 181 FVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISLAWALGDVS 240

Query: 241 KLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           ++ S+ V +++KRS++  P KRCIFTTKF+GIECKIGKK YKICK  DE
Sbjct: 241 QISSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFADE 289

BLAST of MS017941 vs. NCBI nr
Match: XP_022969741.1 (U6 snRNA phosphodiesterase [Cucurbita maxima])

HSP 1 Score: 421.4 bits (1082), Expect = 6.2e-114
Identity = 225/297 (75.76%), Postives = 245/297 (82.49%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAP-------------PDLSPPPPPPPSLPPPPLSLLDF 60
           M+AL ASY GSSSDE+ D VS +              P LS        LPPPPLSLLDF
Sbjct: 1   MEALMASYGGSSSDEDADTVSPSSASASASASASASLPQLSDETESFLPLPPPPLSLLDF 60

Query: 61  PNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSL 120
           PNS SAL DLP  Q  R RSFPHV+GNYA+H+YIPVYIPT ++KEV LFLKK+S LVP+L
Sbjct: 61  PNSTSALDDLPIGQAARVRSFPHVQGNYAVHLYIPVYIPTNARKEVALFLKKLSKLVPAL 120

Query: 121 HLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYW 180
           HLVDID+PL  LCKD+ KLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYW
Sbjct: 121 HLVDIDIPLDILCKDDLKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRYW 180

Query: 181 IDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISL 240
           IDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK+IQVVNEVYKLHNLPEFYKE RPHISL
Sbjct: 181 IDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKRIQVVNEVYKLHNLPEFYKEARPHISL 240

Query: 241 AWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           AWALGDLSKLLS+ V D+MK+S +   SKRCIFT KF+GIECKIGKK +KICK PDE
Sbjct: 241 AWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKKMFKICKFPDE 297

BLAST of MS017941 vs. ExPASy Swiss-Prot
Match: Q7ZYI9 (U6 snRNA phosphodiesterase OS=Xenopus laevis OX=8355 GN=usb1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.1e-18
Identity = 82/277 (29.60%), Postives = 127/277 (45.85%), Query Frame = 0

Query: 12  SSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLP--NAQPTRFRSFP 71
           SS EED+  ++ PP    PP PPP+      ++L     +    DL        R RSF 
Sbjct: 7   SSSEEDEGETSEPPGRRLPPLPPPT------TVLRMFQDMEGDEDLDENTKHEGRIRSFK 66

Query: 72  HVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQA 131
           H  GN+A +VYIP                      P    +D+   L S+  +   L   
Sbjct: 67  HERGNWATYVYIP--------------------FQPQEEFLDLLDELVSVAAENGVLLTK 126

Query: 132 LAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSME 191
           ++ EFHIS S+TV +R H I+  V  L+ KL C  R+     + + + N + +RTFL +E
Sbjct: 127 MS-EFHISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLE 186

Query: 192 IIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSRVVDDKMKRS 251
            ++ G+  + + +  V+   +  NL  FY+E   H+SLAW +GD          +K+K S
Sbjct: 187 -VSVGMEHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKY--------EKLKGS 246

Query: 252 SMAPSKRCI-------FTTKFSG--IECKIGKKTYKI 278
            +   ++ I         T+F+   I CK G KT+ I
Sbjct: 247 CLLELQKVIDRFEDSDTLTRFNAEEIRCKAGNKTFCI 247

BLAST of MS017941 vs. ExPASy Swiss-Prot
Match: Q6DEF6 (U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-16
Identity = 69/208 (33.17%), Postives = 103/208 (49.52%), Query Frame = 0

Query: 35  PSLPPPPLSLLDFPNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVV 94
           P LP P      F +S     D       R RSF H  GN+A +V+ P Y P  +  EV 
Sbjct: 52  PRLPLPESVKEMFRDSEELWTDKSEEHGGRLRSFQHERGNWATYVFFP-YDPEEAFLEV- 111

Query: 95  LFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVS 154
             L K+ +   +      D+PLT            ++ EFH+SLS+TV +R H I   V 
Sbjct: 112 --LNKMMAAAEA-----HDIPLT------------VSEEFHLSLSKTVVLRHHWIQPFVQ 171

Query: 155 MLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLSMEIIAG--GLMEIRKQIQVVNEVYKLH 214
            +R  L   ++++    K + + N + +RTFL ME+  G   L+E+ K   +V+E  K  
Sbjct: 172 SIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVSTGTPHLLELSK---IVDETMKEF 231

Query: 215 NLPEFYKEERPHISLAWALGDLSKLLSR 241
           NL  FY++   HISLAW +GD ++ L +
Sbjct: 232 NLSTFYEDPSFHISLAWCVGDQTERLKK 235

BLAST of MS017941 vs. ExPASy Swiss-Prot
Match: Q91W78 (U6 snRNA phosphodiesterase OS=Mus musculus OX=10090 GN=Usb1 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-15
Identity = 74/280 (26.43%), Postives = 120/280 (42.86%), Query Frame = 0

Query: 11  SSSDEEDDIVSTAPPDLSP---------PPPPPPSLPPPPLSLLDFPNSISALHDLPNAQ 70
           SSS  ED+  + A     P          P P   LP P   L  FP++     D     
Sbjct: 10  SSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLPVPDSVLSMFPSTEEGPEDDSAKH 69

Query: 71  PTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCK 130
             R R+FPH  GN+A H+YIP       +  +   L +    VP L L++          
Sbjct: 70  GGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRLVLME---------- 129

Query: 131 DEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDL 190
                      EFH+SLS++V +R H I   V +L+ ++   +R++   ++ + + N + 
Sbjct: 130 -----------EFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEK 189

Query: 191 SRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGD-------- 250
           +RTF+ +E ++ G  +    +  V+   K  +L  FY++   HISLAW +GD        
Sbjct: 190 TRTFIGLE-VSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQ 249

Query: 251 ----LSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECK 270
               L +++    D +M    +A   RC    KF  +  K
Sbjct: 250 CLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSMPLK 267

BLAST of MS017941 vs. ExPASy Swiss-Prot
Match: Q5I0I5 (U6 snRNA phosphodiesterase OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-14
Identity = 71/280 (25.36%), Postives = 119/280 (42.50%), Query Frame = 0

Query: 11  SSSDEEDDIVSTAPPDLSP---------PPPPPPSLPPPPLSLLDFPNSISALHDLPNAQ 70
           SSS  ED+  + A     P          P P    P P   L  FP++     D     
Sbjct: 10  SSSGSEDEAEAVAAGRSKPGSGLHRCGQNPLPSQRFPVPDSVLNMFPSTEEGPEDDSARH 69

Query: 71  PTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCK 130
             R R+FPH  GN+A H+YIP       +  + + L +     P L  ++          
Sbjct: 70  GGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRLVQME---------- 129

Query: 131 DEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDL 190
                      EFH+SLS++V +R H I   V +L+ ++   +R++   ++ + + N + 
Sbjct: 130 -----------EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEK 189

Query: 191 SRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGD-------- 250
           +RTF+ +E ++ G  +    +  V+ V K  +L  FY++   H+SLAW +GD        
Sbjct: 190 TRTFIGLE-VSSGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQ 249

Query: 251 ----LSKLLSRVVDDKMKRSSMAPSKRCIFTTKFSGIECK 270
               L +++    D +M    +A   RC    KF  +  K
Sbjct: 250 CQQELQEIVDEFEDSEMLLRVLAEQVRCKSGNKFFSMPLK 267

BLAST of MS017941 vs. ExPASy Swiss-Prot
Match: Q9BQ65 (U6 snRNA phosphodiesterase OS=Homo sapiens OX=9606 GN=USB1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.4e-13
Identity = 63/226 (27.88%), Postives = 101/226 (44.69%), Query Frame = 0

Query: 12  SSDEEDDIVSTAPPDLS----PPPPPPPSLPPPPLSLLDFPNSISALHDLPNAQPTRFRS 71
           S DE +D + T P D S      P P    P P   L  FP +     D       R R+
Sbjct: 14  SEDESEDGMRTRPGDGSHRRGQSPLPRQRFPVPDSVLNMFPGTEEGPEDDSTKHGGRVRT 73

Query: 72  FPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLCKDEHKLE 131
           FPH  GN+A HVY+P          + + L    + VP L  + +               
Sbjct: 74  FPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRLVRMKV--------------- 133

Query: 132 QALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDDLSRTFLS 191
                 FH+SLS++V +R H I   V  L+ ++    R++   ++ + + N + +RTF+ 
Sbjct: 134 ------FHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIG 193

Query: 192 MEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGD 234
           +E+ +G   +    +  V+ V +  NL  FY++   H+SLAW +GD
Sbjct: 194 LEVTSGH-AQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGD 217

BLAST of MS017941 vs. ExPASy TrEMBL
Match: A0A6J1DNL4 (U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.8e-151
Identity = 279/283 (98.59%), Postives = 279/283 (98.59%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPNA 60
           MDALKASYRGSSSDEEDDIVSTAP DLS PPPPPPSLPPPPLSLLDFPNSISALHDLP A
Sbjct: 1   MDALKASYRGSSSDEEDDIVSTAPSDLS-PPPPPPSLPPPPLSLLDFPNSISALHDLPIA 60

Query: 61  QPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLC 120
           QPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLC
Sbjct: 61  QPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSLC 120

Query: 121 KDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDD 180
           KDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDD
Sbjct: 121 KDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVNDD 180

Query: 181 LSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLSR 240
           LSRTFLSMEIIAGGLMEIRKQIQVVNEVYK HNLPEFYKEERPHISLAWALGDLSKLLSR
Sbjct: 181 LSRTFLSMEIIAGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLLSR 240

Query: 241 VVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           VVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE
Sbjct: 241 VVDDKMKRSSMAPSKRCIFTTKFSGIECKIGKKTYKICKSPDE 282

BLAST of MS017941 vs. ExPASy TrEMBL
Match: A0A1S3CTB0 (U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.9e-115
Identity = 221/289 (76.47%), Postives = 244/289 (84.43%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIV-----STAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALH 60
           MDAL+ASY GSSSDEE D V     ST+ P           LPPPPLSLL+FPNS   L 
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPSSASTSTPQFFDETVSSLPLPPPPLSLLNFPNSTCVLD 60

Query: 61  DLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVP 120
           DLP  Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV LF+KK+SSLVP+LHLVDID+P
Sbjct: 61  DLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDIDIP 120

Query: 121 LTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWET 180
           L  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKWET
Sbjct: 121 LDVLCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWET 180

Query: 181 FVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLS 240
           FVNDDLSRTFLSMEII GGLMEIRKQIQVVNEVYKLHNLPEFYKE RPHISLAWALGD+S
Sbjct: 181 FVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISLAWALGDVS 240

Query: 241 KLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           ++ S+ V +++KRS++  P KRCIFTTKF+GIECKIGKK YKICK  DE
Sbjct: 241 QISSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFADE 289

BLAST of MS017941 vs. ExPASy TrEMBL
Match: A0A6J1HYN3 (U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 3.0e-114
Identity = 225/297 (75.76%), Postives = 245/297 (82.49%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAP-------------PDLSPPPPPPPSLPPPPLSLLDF 60
           M+AL ASY GSSSDE+ D VS +              P LS        LPPPPLSLLDF
Sbjct: 1   MEALMASYGGSSSDEDADTVSPSSASASASASASASLPQLSDETESFLPLPPPPLSLLDF 60

Query: 61  PNSISALHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSL 120
           PNS SAL DLP  Q  R RSFPHV+GNYA+H+YIPVYIPT ++KEV LFLKK+S LVP+L
Sbjct: 61  PNSTSALDDLPIGQAARVRSFPHVQGNYAVHLYIPVYIPTNARKEVALFLKKLSKLVPAL 120

Query: 121 HLVDIDVPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYW 180
           HLVDID+PL  LCKD+ KLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYW
Sbjct: 121 HLVDIDIPLDILCKDDLKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRYW 180

Query: 181 IDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISL 240
           IDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRK+IQVVNEVYKLHNLPEFYKE RPHISL
Sbjct: 181 IDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKRIQVVNEVYKLHNLPEFYKEARPHISL 240

Query: 241 AWALGDLSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           AWALGDLSKLLS+ V D+MK+S +   SKRCIFT KF+GIECKIGKK +KICK PDE
Sbjct: 241 AWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKKMFKICKFPDE 297

BLAST of MS017941 vs. ExPASy TrEMBL
Match: A0A6J1EQH7 (U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.9e-114
Identity = 225/291 (77.32%), Postives = 243/291 (83.51%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAP-------PDLSPPPPPPPSLPPPPLSLLDFPNSISA 60
           M+AL ASY GSSSDE+ D VS +        P LS        LPPPPLSLLDFPNS SA
Sbjct: 1   MEALMASYGGSSSDEDVDTVSPSSASASASLPQLSDETESFLPLPPPPLSLLDFPNSTSA 60

Query: 61  LHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDID 120
           L DLP  Q  R RSFPHV+GNYALH+YIPVYI T ++KEV LFLKK+S LVP+LHLVDID
Sbjct: 61  LDDLPIGQAARVRSFPHVQGNYALHLYIPVYITTNARKEVALFLKKLSKLVPALHLVDID 120

Query: 121 VPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKW 180
           +PL  LCKD+HKLEQALAREFHISLSRTVPIRVHQIDSIV+MLRQKLQ QRRYWIDFSKW
Sbjct: 121 IPLDILCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKW 180

Query: 181 ETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGD 240
           ETFVNDDLSRTFLSMEIIAGGLMEIRK IQVVNEVYKLHNLPEFYKE RPHISLAWALGD
Sbjct: 181 ETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNLPEFYKEGRPHISLAWALGD 240

Query: 241 LSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           LSKLLS+ V D+MK+S +   SKR IFT KF+GIECKIGKK +KICK PDE
Sbjct: 241 LSKLLSQSVHDEMKKSMVKEKSKRSIFTAKFNGIECKIGKKMFKICKFPDE 291

BLAST of MS017941 vs. ExPASy TrEMBL
Match: A0A0A0KPH5 (U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 8.7e-114
Identity = 222/291 (76.29%), Postives = 244/291 (83.85%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEEDDIVSTAPPDLSPPPPPPPS-------LPPPPLSLLDFPNSISA 60
           MDAL+ASY GSSSDEE D VS  PP  S   P           LPPPPLSLL+FPNS   
Sbjct: 1   MDALRASYGGSSSDEEVDTVS--PPSASTSAPQFLDETVTFLPLPPPPLSLLNFPNSTCV 60

Query: 61  LHDLPNAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDID 120
           L DLP  Q TR RSFPHV+GNYALHVYIPVY+PT ++KEV LF+KK+SSLVP+LHLVDID
Sbjct: 61  LDDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDID 120

Query: 121 VPLTSLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKW 180
           +PL  LCKD+ KLEQA AREFHISLSRTVPIRVHQIDSIV+MLRQKLQ  RRYWIDFSKW
Sbjct: 121 IPLDVLCKDDQKLEQAWAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKW 180

Query: 181 ETFVNDDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGD 240
           ETFVNDDLSRTFLSMEII GGLMEIRKQIQVVNEVYKLHNLPEFYKE RPHIS+AWALGD
Sbjct: 181 ETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISVAWALGD 240

Query: 241 LSKLLSRVVDDKMKRSSM-APSKRCIFTTKFSGIECKIGKKTYKICKSPDE 284
           +S+L S+ V +++KRS++  P KRCIFTTKF+GIECKIGKK YKICK PDE
Sbjct: 241 VSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPDE 289

BLAST of MS017941 vs. TAIR 10
Match: AT5G51170.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-88
Identity = 172/285 (60.35%), Postives = 208/285 (72.98%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEE-DDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPN 60
           M+AL+ASY  SSSD + DD+   +P   +       SLPPPPL+LLD   S  +L     
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDSISLPPPPLALLDSIVSTGSLDFFST 60

Query: 61  AQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSL 120
               R R+FPHV+GNYALHVY+PV IP   KKE+V FLKKV+S+VP LHLV+ DVPL+ L
Sbjct: 61  EPGVRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSIL 120

Query: 121 CKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVND 180
           CKD+ K E+AL REFHISL R VP+RVHQI+S++SMLRQKLQ Q+RY IDF+KWE FVND
Sbjct: 121 CKDDQKFERALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVND 180

Query: 181 DLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKLHNLPEFYKEERPHISLAWALGDLSKLLS 240
           D +R+FLS+EI   GL EI KQI  VNEVYKLHNLPEFYK+ RPHISL WALGD+   L 
Sbjct: 181 DHTRSFLSLEITTSGLSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLK 240

Query: 241 RVVDDKMKRSSMAPS-KRCIFTTKFSGIECKIGKKTYKICKSPDE 284
             VD ++++       +  IFT+KF GIECKIG KT+KICK PDE
Sbjct: 241 GAVDVELRKLRAGGCVQNRIFTSKFCGIECKIGNKTHKICKLPDE 285

BLAST of MS017941 vs. TAIR 10
Match: AT5G51170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-57
Identity = 118/206 (57.28%), Postives = 150/206 (72.82%), Query Frame = 0

Query: 1   MDALKASYRGSSSDEE-DDIVSTAPPDLSPPPPPPPSLPPPPLSLLDFPNSISALHDLPN 60
           M+AL+ASY  SSSD + DD+   +P   +       SLPPPPL+LLD   S  +L     
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDSISLPPPPLALLDSIVSTGSLDFFST 60

Query: 61  AQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTSL 120
               R R+FPHV+GNYALHVY+PV IP   KKE+V FLKKV+S+VP LHLV+ DVPL+ L
Sbjct: 61  EPGVRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSIL 120

Query: 121 CKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVND 180
           CKD+ K E+AL REFHISL R VP+RVHQI+S++SMLRQKLQ Q+RY IDF+KWE FVND
Sbjct: 121 CKDDQKFERALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVND 180

Query: 181 DLSRTFLSMEIIAGGLMEIRKQIQVV 206
           D +R+FLS+EI   GL E+  ++ ++
Sbjct: 181 DHTRSFLSLEITTSGLSEVLSKLMLL 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155865.13.7e-15198.59U6 snRNA phosphodiesterase [Momordica charantia][more]
XP_023549871.12.5e-11577.13U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo][more]
XP_038875354.14.3e-11577.66U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida][more]
XP_008467330.11.6e-11476.47PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo][more]
XP_022969741.16.2e-11475.76U6 snRNA phosphodiesterase [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q7ZYI95.1e-1829.60U6 snRNA phosphodiesterase OS=Xenopus laevis OX=8355 GN=usb1 PE=2 SV=1[more]
Q6DEF63.6e-1633.17U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1[more]
Q91W782.3e-1526.43U6 snRNA phosphodiesterase OS=Mus musculus OX=10090 GN=Usb1 PE=2 SV=1[more]
Q5I0I55.8e-1425.36U6 snRNA phosphodiesterase OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1[more]
Q9BQ656.4e-1327.88U6 snRNA phosphodiesterase OS=Homo sapiens OX=9606 GN=USB1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1DNL41.8e-15198.59U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 S... [more]
A0A1S3CTB07.9e-11576.47U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1[more]
A0A6J1HYN33.0e-11475.76U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1[more]
A0A6J1EQH73.9e-11477.32U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV... [more]
A0A0A0KPH58.7e-11476.29U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G51170.12.1e-8860.35unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0... [more]
AT5G51170.22.5e-5757.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027521U6 snRNA phosphodiesterase Usb1PFAMPF09749HVSLcoord: 38..278
e-value: 7.0E-58
score: 195.9
IPR027521U6 snRNA phosphodiesterase Usb1PANTHERPTHR13522UNCHARACTERIZEDcoord: 1..282
IPR027521U6 snRNA phosphodiesterase Usb1HAMAPMF_03040USB1coord: 4..280
score: 28.684303
NoneNo IPR availableGENE3D3.90.1140.10Cyclic phosphodiesterasecoord: 67..278
e-value: 7.4E-54
score: 184.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017941.1MS017941.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034477 U6 snRNA 3'-end processing
molecular_function GO:0004518 nuclease activity