MS017938 (gene) Bitter gourd (TR) v1

Overview


Name	MS017938
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SWR1 complex subunit 2
Location	scaffold373: 3950772 .. 3958032 (-)
RNA-Seq Expression	MS017938
Synteny	MS017938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGAAGAGAATGATGATGAATATGAAGAAGAACCTGAGATTGCTGATGAATTTGATAGTGATTTCAATGAAGACGTGAGTTCTGTTTCAGTTTCCTAACCCTGTCACAACATGTATTTATGGTCAAATAAATCCTCTTTGGCTATATTTTCTTGATAGGAGCCCGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGACAGGTTTTACTTTTATCTTCTCCAAAACGCTTGGAGGTCGGATTAGAAATATTTATTTTTTAAAATTGGGTTTTCTTCTAGGACACAAACAAAGAAGCGACTAATATTTCCGGGAAAGACTTCTTCAAAGAAAAAGAATAAAAAGAGAGCTGTTTTGAAAATAGAGACGCCTTCTAAAGATGAAGCATCAACTGATCACTCTACACCTCCTGAACATCATGATACACCAGATGATACTGAAGTGGAGAGAACGGTGAGGAAATCCACTAGAACTTCAGTTATTGTTAGGCAAGCTGAGAGGGATGCTATTCGTGCGGCTTTGCAAGCCACAATGAAGGTGAGTCCTGAATACTTGGTTTGTTGGAGTGGTTTGAGATTTTCTTGAAAGCAGTTTCTTGTTTTGAATATTGTGATGCTATGATGGAGTAGAAACTTTTATTTGGTTCATATTCTCTTCAACTACTTGAAATTTTTTTATCATCCTCCCAATTTCTTAGTCATTTGTTGTGTCATGTTAATGAGCATCCATTTCAATCTTGATAAGGCAATCCTAATTCTCAGCCCAATGATCCAAGCTTTTGTTAAGCAAGAACCCTTGAATCAAAGAAATTAACACCTCCTTAAACAAGTTAGAATCAACCAAGAGAAAGGCTAGAAATTGATTACCTCTATGATCAAAGATCTAGAAGCAAGAATGGAAATCTTGTTCTAGAATGAGTCATTCCACAATCAAACTTGATCAAGGCTGGATTGAATGGCTCAAAATGCAATCTATCACAAGAATTGCAAGAAATCTTAGAAATGGCAATGGGATTTCTAAAGAAAATGTCTCTTGAGAGATTAAATTTCATTCCTCTAAAATCTGCCTTTTACATAGCTTGGATGGGGCTTTTTATAGCCATTATATGAGTGAAACCCCCAACCCTTCACTTTCCAAAATAAAACCCATAAGTAGTAATGACCACAATTGGTCTGCTTAATAACTTCCTAGAATTGAACTCTAAAGTTGAAATAATTTGGAAGACCAAAAAATCAAAAATTACAAGCAAAATTTGATGACTTAGAAACAACAAATGAATCTTTAAAATGTTGGCACAACGTCAATCTTGCAAACGTTGACCTTCACAACATCGTCCTCTCTTGGATTATTTTGCAGCATCTGAAATAAAGATTGAACTGAGCCTATCCAATTTTGTACGTGAATAAGGAATGCTTGTTAAAGCTTCTTAGCCTTGGCTCGTGTAATAGGTCCAGTGGAGACGTGCGGAACACCATGATTCTTATCAAATCTTGAGATCCATTATGTGTTTAAGCGATGAGATGAAATGAGAAAAAAATCCTGCATAAGGGAAAAAAATGAAAAATATAAGACAGAATCTTTTGAGTTCTAATGAGTTCTAATGGTATCAGTTCCAAAAGGTGCAGCAGACCGCTTCCAATTTTTATTGCAAAGTTGATATTCTTCTTTTTTTGTACTTAGACTTACTCTTAGGTGGTAATCCTAAAAGCACAGATTTTTGGCACCCGGTTCTTGAAAAAGTATCTAAGAAGTTAGATAGGTGGAAACGTATCCATCTATCTAGGGGTGGAAGATTGAAATTGTGCAACTCGGTCTTAGCCAAACCAACCAATTATTTATCTTTGTTTTAAATGCCTTTGGGAGTTCGTAAACAAATAGAGAAAGCAATAAGGAATTTTCTGTAGGAAGGAATAGGAAGGAAATTCTAAAGGGTCGCATTTAGTGAATTGTGGAGCATCACTTCTAAACATCTGGAGGATGGAGGCTTGGGGGTTGGAGGACTTTCCATAAGAAACAACGCTTTTTTAGCTAAATGGGCCTGGTGTTTTAATCTTGAACCTTGTGGCATCAAGTGGTGGATAATATTTATGGTTCTGATCAATTCGGTTGGTTTATGATTGACAAGCCAAACGGTTGTCTTTGATGTCCCCGGAGAAATATAGCTAAGCATTTGAGGAAGGTCGAACCTTACATCACTTATAAGATTGGTGATGGAAAGGGGGTTTCTTTTTGGCATTATTCTTGGATTGGTATTTCACCACTAAAGGTAGCTTTCCTAGAATTTATAAGCTATCTCCCAACCCTCACGCTTCAATTGCAGATTTTTGGGATTTTTTCTACTCGATCGTGAACTGTGGAGTCAAGAAGATCCTTGAAAGATGAAAAAATTGTTGAGTTTTATGCCCTTATGTCTGTGATAAGTTCAGTTTCTGTTCTCATTTCTCAATGAAGGTGATCGAAGGTTATGGTCCTTGGGACCTTCAGGTGCTTTTACAGTATCTTCCTTAAGTAGGCAGGGTTTCCTCTCTTTTGCCTAAAGATCTCTTTTCTACTCTTTGGAAATGAAAGAGTCCAAGAAAAGTTAGTATTTTTTCTTTGATTCTTCTCCAAGGAAAGTTAAACACAGCCGATATTCTCCAAAAGAAGCTTCCCTTCGCAGCTCTTTGCTCGTCTATTTGCGTATTGTGCGCTGCTAGTAGTGAATCTACTGATCACATCTTCTTCCATTGCTCCTACACGAGGCAAGGTTGGAAGTGTTTCTCCTGTCAGTTTAATCTCGGCTGGATTTTTTATTCCAAGGCCAAAGACAATCTGCTGTAGCTCTTTTGTGGGATTGTTTTATCTTCCTCCTTTATCAGACTTCCAATGTCAAGGCCCTACTAAGTTTAAAGCTTCCCAATGATGTTCTTTATCAGATTGCTTTTCAAATTACTCGCCTAATCTTATTTGTAACAATTGTAACCATTCCCCTCGTAGTCCTTTGATGTTGTTTCTATCTTTTATTTTTGTTTATTTTTACTCTTGTAGAGTTTGCATCTTTGATGTTGTTTCTATGTTTTATTTTTGTTTATTTTCATTCTTGAAGCAAGAGTTTGTATCTTTGACCAACTTTTGTTCCTTTTCATTTCTTGAATGAAAAATTCGTTTTTTGGTAATAAAAAATAAATAAATTGTATGACACCCATAATTTGGTTCTCCATTCGTTTGATTTTACTGACGTTTGAAGATATAAAAACTGTTAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTTAGATAACACATTCTCTTCTCCTAAAGGAGTTATTGGACTAGTTTACTATTTTGATATATGAACTTCATACCAAGTGAATATTCTTTTTAGATAAGACACTTGTATTCAGAAGAGTAAGGAATCAGTACAGTAGATAAGACATCCACCCTAAGCCTAATGACCTTACAAAAAAGTCCCCCAATTTCACTGATAAAAAGAACTTCATAAACAATAAGTATTAAAGAGCTAACTTCTAGATGTCTTCTAAATGTTAGTTTTTTCATTAGAATGCTTTGCTTTCTTCTTCTTTTTTTTCCGGATAAGATGCTTTGCTTTCTTCTAATCCAAGTCTTCTACATACGAGCCTTTATTGCCTTACCAAATGAATACACTGTTCTGTTTATGTGGTTCTAATTATTAATCGCATATTTTTTCCTTTCCCAAGAAGTTCCTATCCTGCTTCTTGTCCTGCAATGTGTAATATTACTCTAATGTTTACCATCAAATAATTTTCACAAAATCACTGTTTACAGTATTAGATATGAGTGAGATTGTATCCTTTCTTGTCTACTAGCCAATAAAGAGGAAAAATCCAGGCGAGGAGAAGAAGATGAGTCAGGAAGACATGCTTCTTGAAGCTGCTCAAACAGGTGAAACTGATGGCTAATGTATGTTGTTGTAACTTGATACTCTGGATGATACTAGTAGGAATGCTCTCATTTTTCTCTTGGATTAATATTTCAAACTTCCATATCTAAGAAATCATGAACTTGAGGAATTTGGAGCGTGTTTTGGCAAGGGAAGAAGAAGTCAAAAAGAGAGCAATTGTGCATAAAGATGTGTACAGTGGTCCACGGATACGATACTTATCAATAAATGGTACCTTCTGAAGTGCAATTGAAATTTTGTGTTCTTTCAGATAAGAACTGTCCATGTTTGGAATTAGGTAATATTGATTTGTTTTGTTGCAGGTTGCTCGTATCTAGAGTTTAGTAAAGGATCATCATTTCAGGCAGAGCTTTCAACCGCATCAGTTCCATGTAATTACTTGTACATGATCATCCACTTTAGTTATAAAACAGCAAATCATCAAGCATTGTTAGCTCGAAAAATTTGTCTGATATCCTGCTTCCTTGTATTTGTCATGGTAAAAAAAATTGTTTACTGCCAAAAAGAAAAAAATGGATCTTGTTCGGGCCAGTACATCCCCCCCCCCCTCCCCCCCACAATTGGAGTGACCCTCTCGTAAGCTTATTTGGTTCCTCTTTTTTTAATTATTATTATTTTTTTAATTTTTACATCTTTTCAAATTTTCAATGAATAGTAAGATTTCTTATGAGAAAAAAGTGTGATTTACCCTTCTAAATATGATGAGTTAAATCTTAGTTCTGACTTCTGAGAGAGTTCTGACTTCTGAGAGCTAATGTCCCTTGGAATGTGCTTGTAAGGTATCAAATTCATTTCATTAAGTTCTTGGTTCTTTTTTCCTCTTCCTTTGTACTCAAAGATGATCAGGTTTTAATGTAAATTATGTAATCCTTTGTCCCCTATCTTCTGCAATGCATATGAAATTGGAAAACATTGAGACTTGAGAGAATCTAGTATACTTTTGTGCACTGTAAGTTTCTTTAAAATTTTAGCACCTAAGTATTTTTTCTCTCTTCCCTTTTTCTGAACAGATCCAGAGAAAAATGTATGTGTGATAACTGGTTTGCCTGCGAGGTAGGATCTCAATGCTATTTGTTGCTTCTTAAATTTTTTTTCTTTTTTTTTTTTCTAATAAACAGAAAGATGTATATTCAGAAAGGAAAGGAAAGGAACACCCTAATGGCGAGGGACGAGAATGTCCCTGCTCGAGAACGAACTACATATGAAATAAGAGCCTGCCAATTTGACAAAATCAACAAAATCTATAATTACAAAAGAATTTCTAGTGATTTGAGCACCACTAAGAAGCATTGTGCTGAACACAATACTACAGAAGAAAAAAATAAATCTAAAGCAGTGAACTTATCTTAAAAAATGCGCTGACTTCTGTCCCTTCCAAATATGCCAAAGAAGAGTTCTAACTGCATATTTCCACAAATTTTCTTAAATTCCAACCCCAATGGCCTCCAAAACCCAATCGTTTATTTTAAAAAGGCAAACATAAAGAAAGGCCAACCTCACGAAGAATAAAAGACCAACCTTTGGAGGCAAAGTTGCAATGTAAGAAAAGATGATTTATATCTTCCCTCGGAACAAAGGCAGCAAACAGAGGGAGAAAGGGTCCAAGCCTTCTTATATTTTGTTCTTATTTTCCTATTCCAAAGAAAAGGTTCAAGTGATTGTTCTGACGTTCTTTTAATCTGAAAAAATAAAAGTTCAAATGCTTCATGAATCATGATGATGTAGTTTATAAGCCTAGTTCAATTGTTCTCAATCGGAAGCCAACATGGTCTAATTCCTTCGTATTTGTTGTATAATAGAAATCATTAAAGATAGATAGGTCAGTGGTTTTGGATAGAGCAGAAGTCGTCTTATCCTTGTTTTTTTTAAATAGTAGTAGATGAAGGTGCAATCCTCATACCTTAATACACCGCAGAAACAGAGTTACCTTATGCAATTAAAGGAACTTCAGTTTTCTGCACGGTATTGCTCTTAAAACAGTAATTAAGTCGGGTATTAAGAACTTGATAATTCTGCAGCCTACTGCTCTCTCTCGTAATTACTGCTTTTATGCTGCAGGTATCGTGACCCAAAAACAGGGTTACCTTATGCAACTAAAGAAGCTTTTAAGAGAATCCGTGAACGGTATAGTTCTTATCGCTTATTTTGGAGTCTTGATTTCTTCATTATATGATACTAGAATCTATCTACTTGTCTCTTCATTTCATTTTCTTCCAGCATAAGAATCATTTCTTGATTGTATTATATGTCAATTTTGTTTTTAACCCAACAAAGAAGCTGGAGGGTGACTGATGATACAAGTTCAGAAAAAATTGACTAATTTATCTTTCCTCGCCATATCTTAGCTTTCCATCGCTTCATTGTGGTGTGACTGGTAAGGACAAAGAACTGCTTTATTAGTTTCCCAAAATATATGTACAACCAAGTCCAGGAATCCTAGCCTTCATAAATACGCTTACAAGGATAACTACTTAACTACATAAACTGTCAGATAACTAACAAGTCATAATTCATAAATAAGAAAGTAACTAATAAAACCATACGTACTAACTTAACTAACTGAAAAATCAAACAAAATACAACTAATATACAAGTGTATCCAAAGGAGCCTACATCAATTCTCTCCCTCTTAAAAGAAAACATCAGTTTCCAATCATGATTCGTGGCTCATCAAGAGTGTAATAAGTGGCCAGGTAAAAAATATTATAGACATTTGAGATATTAAGATCAGAAGTCAATATGACTTGAGCATTAAGTTCCACTCTTTTGAGTATTCGGTGTGGCCCTGCCCGGCCTTTTTCTTTTTGAGTTTATTATAAGGGACTATAGGGAACTTGTTTAGTCGTAGATGGTAATTCAGAGGTCATGGTAATTGGTAACCTGTTTCTTCTAAAGGTGTCTGTGGTCAATGATAACTCAGAGGTTAATAGTATTAAAAAAACTGGAGTTAATGCCTTTTTTCTTTCTTTTTATTATCTGCGTTGATTTGTAAAGTGAATGTTCTCGAAGCTCTTTCTCTACTTGGTTACCCCAAATTGATCCTTTTATCCTTTGATAACACTTGAGTATCTAATTGCTGATGCAGTTTTGCGGATGATGGTATGGGAGCCAAGAAGGACATGGATATGGGATATTTATTTGCTTCGCTTTCTGGTAAAGGATTCTCAGCAAGGCGGAAGAGATCAATGCTGCAAAATAAAAACAGAATGCCCTACTTACGCCACTTTTCTCGTTTTCGCCAAATTCCAGCCATTGATTCTGAACTTTCTGAT

mRNA sequence

CAGGAAGAGAATGATGATGAATATGAAGAAGAACCTGAGATTGCTGATGAATTTGATAGTGATTTCAATGAAGACGAGCCCGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGACAGGACACAAACAAAGAAGCGACTAATATTTCCGGGAAAGACTTCTTCAAAGAAAAAGAATAAAAAGAGAGCTGTTTTGAAAATAGAGACGCCTTCTAAAGATGAAGCATCAACTGATCACTCTACACCTCCTGAACATCATGATACACCAGATGATACTGAAGTGGAGAGAACGGTGAGGAAATCCACTAGAACTTCAGTTATTGTTAGGCAAGCTGAGAGGGATGCTATTCGTGCGGCTTTGCAAGCCACAATGAAGCCAATAAAGAGGAAAAATCCAGGCGAGGAGAAGAAGATGAGTCAGGAAGACATGCTTCTTGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTGGAGCGTGTTTTGGCAAGGGAAGAAGAAGTCAAAAAGAGAGCAATTGTGCATAAAGATGTGTACAGTGGTCCACGGATACGATACTTATCAATAAATGGTTGCTCGTATCTAGAGTTTAGTAAAGGATCATCATTTCAGGCAGAGCTTTCAACCGCATCAGTTCCATATCCAGAGAAAAATGTATGTGTGATAACTGGTTTGCCTGCGAGGTATCGTGACCCAAAAACAGGGTTACCTTATGCAACTAAAGAAGCTTTTAAGAGAATCCGTGAACGTTTTGCGGATGATGGTATGGGAGCCAAGAAGGACATGGATATGGGATATTTATTTGCTTCGCTTTCTGGTAAAGGATTCTCAGCAAGGCGGAAGAGATCAATGCTGCAAAATAAAAACAGAATGCCCTACTTACGCCACTTTTCTCGTTTTCGCCAAATTCCAGCCATTGATTCTGAACTTTCTGAT

Coding sequence (CDS)

CAGGAAGAGAATGATGATGAATATGAAGAAGAACCTGAGATTGCTGATGAATTTGATAGTGATTTCAATGAAGACGAGCCCGAACCAGAGGAAGAAGCTGAGAATGAAGCAGATGACAGGACACAAACAAAGAAGCGACTAATATTTCCGGGAAAGACTTCTTCAAAGAAAAAGAATAAAAAGAGAGCTGTTTTGAAAATAGAGACGCCTTCTAAAGATGAAGCATCAACTGATCACTCTACACCTCCTGAACATCATGATACACCAGATGATACTGAAGTGGAGAGAACGGTGAGGAAATCCACTAGAACTTCAGTTATTGTTAGGCAAGCTGAGAGGGATGCTATTCGTGCGGCTTTGCAAGCCACAATGAAGCCAATAAAGAGGAAAAATCCAGGCGAGGAGAAGAAGATGAGTCAGGAAGACATGCTTCTTGAAGCTGCTCAAACAGAAATCATGAACTTGAGGAATTTGGAGCGTGTTTTGGCAAGGGAAGAAGAAGTCAAAAAGAGAGCAATTGTGCATAAAGATGTGTACAGTGGTCCACGGATACGATACTTATCAATAAATGGTTGCTCGTATCTAGAGTTTAGTAAAGGATCATCATTTCAGGCAGAGCTTTCAACCGCATCAGTTCCATATCCAGAGAAAAATGTATGTGTGATAACTGGTTTGCCTGCGAGGTATCGTGACCCAAAAACAGGGTTACCTTATGCAACTAAAGAAGCTTTTAAGAGAATCCGTGAACGTTTTGCGGATGATGGTATGGGAGCCAAGAAGGACATGGATATGGGATATTTATTTGCTTCGCTTTCTGGTAAAGGATTCTCAGCAAGGCGGAAGAGATCAATGCTGCAAAATAAAAACAGAATGCCCTACTTACGCCACTTTTCTCGTTTTCGCCAAATTCCAGCCATTGATTCTGAACTTTCTGAT

Protein sequence

QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNKKRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYSGPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYATKEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRFRQIPAIDSELSD

Homology

[Close]

BLAST of MS017938 vs. NCBI nr
Match: XP_022159622.1 (SWR1 complex subunit 2 [Momordica charantia] >XP_022159623.1 SWR1 complex subunit 2 [Momordica charantia] >XP_022159624.1 SWR1 complex subunit 2 [Momordica charantia])

HSP 1 Score: 572.0 bits (1473), Expect = 3.1e-159
Identity = 307/312 (98.40%), Postives = 309/312 (99.04%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           +EENDDEYEEEPEIADEFDSDFNEDE EPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK
Sbjct: 47  EEENDDEYEEEPEIADEFDSDFNEDESEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KRAV KIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRAVSKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRIRYLSI+GCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIRYLSISGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF
Sbjct: 287 KEAFKTIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPAIDSELSD
Sbjct: 347 RQIPAIDSELSD 358

[Close]

BLAST of MS017938 vs. NCBI nr
Match: XP_038907261.1 (SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907262.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907263.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907264.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907265.1 SWR1 complex subunit 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 517.7 bits (1332), Expect = 7.0e-143
Identity = 282/312 (90.38%), Postives = 291/312 (93.27%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEAD+RTQTKKRLIFPGKTSSK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEADERTQTKKRLIFPGKTSSKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KR V K+E PSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRVVSKVEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQE+MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHK VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRIRYLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIRYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADD M A K+MDMGYLFASLSG GFSARRKRS  QNK  M YLRHFSRF
Sbjct: 287 KEAFKTIRERFADDSMVA-KEMDMGYLFASLSGNGFSARRKRSTPQNKKEMSYLRHFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS+LSD
Sbjct: 347 RQIPAFDSDLSD 357

[Close]

BLAST of MS017938 vs. NCBI nr
Match: XP_023550830.1 (SWR1 complex subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 511.5 bits (1316), Expect = 5.0e-141
Identity = 281/312 (90.06%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEAD+RTQTKKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEADERTQTKKRLIFPGKTPSKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KR V KIE  SKDEASTD STPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIV K VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVQKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI+YLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIQYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGA K+MDMGYLFASLSGKGFSARRKRS  QNKN + YLR FSRF
Sbjct: 287 KEAFKSIRERFADDGMGA-KEMDMGYLFASLSGKGFSARRKRSTPQNKNEISYLRPFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS+LSD
Sbjct: 347 RQIPAFDSDLSD 357

[Close]

BLAST of MS017938 vs. NCBI nr
Match: XP_022970136.1 (SWR1 complex subunit 2 [Cucurbita maxima] >XP_022970137.1 SWR1 complex subunit 2 [Cucurbita maxima])

HSP 1 Score: 510.4 bits (1313), Expect = 1.1e-140
Identity = 280/312 (89.74%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEAD+RTQTKKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEADERTQTKKRLIFPGKTPSKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KR V KIE  SKDEASTD STPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIV K VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVQKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI+YLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIQYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGA K+MDMGYLFA+LSGKGFSARRKRS  QNKN + YLR FSRF
Sbjct: 287 KEAFKTIRERFADDGMGA-KEMDMGYLFATLSGKGFSARRKRSTPQNKNEISYLRPFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS+LSD
Sbjct: 347 RQIPAFDSDLSD 357

[Close]

BLAST of MS017938 vs. NCBI nr
Match: KAG6579641.1 (SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 510.0 bits (1312), Expect = 1.5e-140
Identity = 280/312 (89.74%), Postives = 289/312 (92.63%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEAD+RTQTKKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEADERTQTKKRLIFPGKTPSKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KR V KIE  SKDEASTD STPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIV K VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVQKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI+YLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIQYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGA K+MDMGYLF SLSGKGFSARRKRS  QNKN + YLR FSRF
Sbjct: 287 KEAFKTIRERFADDGMGA-KEMDMGYLFTSLSGKGFSARRKRSTPQNKNEISYLRPFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS+LSD
Sbjct: 347 RQIPAFDSDLSD 357

[Close]

BLAST of MS017938 vs. ExPASy Swiss-Prot
Match: F4IP06 (SWR1 complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SWC2 PE=1 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 8.4e-91
Identity = 193/307 (62.87%), Postives = 235/307 (76.55%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           +EE+DDEYE E E+ADEFDSDFN+DEPEP+  A NE + R   KKRLI+PGKT+SKKK K
Sbjct: 46  EEEHDDEYEAEREVADEFDSDFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKK 105

Query: 61  KRAVLK-------IETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAER 120
           K  V+         E P  +E         E ++  +D E E+ +RKSTRTSV+VRQAER
Sbjct: 106 KTKVVSQLEYIPGDEKPG-EELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAER 165

Query: 121 DAIRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAI 180
           DA+RAA+QAT KPI+RK  GEEK+M+QE+MLLEAAQTEIMNLRNLERVLAREEEVKK+AI
Sbjct: 166 DALRAAIQATTKPIQRKKVGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAI 225

Query: 181 VHKDVYSGPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPK 240
           VHK VY GP+IRY S +GC+YLEF  G+SF +ELST SVPYPEK VCVITGLPA+YRDPK
Sbjct: 226 VHKAVYKGPQIRYHSKDGCNYLEFCNGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPK 285

Query: 241 TGLPYATKEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPY 300
           TGLPYAT++AFK IRERF D+  G +K M+MG LF +L  KGF+ ++KR+ +   N+   
Sbjct: 286 TGLPYATRDAFKAIRERFMDEHDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFS 345

[Close]

BLAST of MS017938 vs. ExPASy Swiss-Prot
Match: Q5E9F6 (Vacuolar protein sorting-associated protein 72 homolog OS=Bos taurus OX=9913 GN=VPS72 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-07
Identity = 88/300 (29.33%), Postives = 129/300 (43.00%), Query Frame = 0


Query: 1   QEENDDEYE-EEPEIADEFDSDFNEDE-PEPEEEAENEADDRTQTKKRLIFPGKTSSKKK 60
           +E  DDEY+ ++ +  DE DSDF+ DE  EP  + E E   R   K+R++        K 
Sbjct: 39  EESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRR---KRRVVTKAYKEPLKS 98

Query: 61  NKKRAVLKIETPSKDEASTDHS---TPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDA 120
            + R   K+ TP+     T       P E  D  D T+  +++R+ST       +  R  
Sbjct: 99  LRPR---KVSTPAGSSQKTREEKALLPLELQD--DGTDSRKSMRQST------AEHTRQT 158

Query: 121 IRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVH 180
                +   +  +RK P  E+ ++QE++L EA  TE +NLR+LE    R E  KK+ +  
Sbjct: 159 FLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLE-TYERLEADKKKQVHK 218

Query: 181 KDVYSGPRIRYLSIN-----------------------------------------GCS- 240
           K    GP I Y S+                                           CS 
Sbjct: 219 KRKCPGPIITYHSVTVPLVGEPGPKEENVDVEGLDPAPMASALAARAGTGPVIPPARCSR 278

Query: 241 -YLEFSKGSSFQAELSTASVP-YPEKNVCVITGLPARYRDPKTGLPYATKEAFKRIRERF 252
            ++ FS  ++F+        P  P + VC +T  PA YRDP T +PYAT  AFK IRE +
Sbjct: 279 TFITFSDDATFEEWFPQGRTPKIPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323

[Close]

BLAST of MS017938 vs. ExPASy Swiss-Prot
Match: Q9VKM6 (Vacuolar protein sorting-associated protein 72 homolog OS=Drosophila melanogaster OX=7227 GN=YL-1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.4e-07
Identity = 80/288 (27.78%), Postives = 126/288 (43.75%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E D EYE++ E  D  DSDF+ DE +     + EA ++ + +      G  ++K   +
Sbjct: 37  EDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKR------GVVNTKAYKE 96

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVER----------TVRKSTRTSVIVRQ 120
            +  +K ET          +TP  H   P     +R          + RKS RTS  ++ 
Sbjct: 97  TKPAVKKET---------KATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKT 156

Query: 121 AERDAIRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKK 180
                    L    K  K+K   E+   +QE++L EA  TE  N ++LE+    E E KK
Sbjct: 157 QATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELE-KK 216

Query: 181 RAIVHKDVYSGPRIRYLSINGCSYLEFSKGSS---------------------------F 240
           ++   K  +SGP IRY S+   +  + ++G++                           F
Sbjct: 217 KSRPTKRTFSGPTIRYHSLTMPAMRKPTRGANPAVDSKDLAGKCERTFVTIENDFNDKVF 276

Query: 241 QAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYATKEAFKRIRERF 252
           Q+     + P     +C IT LPARY DP T  PY + +AFK +RE +
Sbjct: 277 QSLFRHKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAY 308

[Close]

BLAST of MS017938 vs. ExPASy Swiss-Prot
Match: Q15906 (Vacuolar protein sorting-associated protein 72 homolog OS=Homo sapiens OX=9606 GN=VPS72 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-06
Identity = 90/300 (30.00%), Postives = 129/300 (43.00%), Query Frame = 0


Query: 1   QEENDDEYE-EEPEIADEFDSDFNEDE-PEPEEEAENEADDRTQTKKRLIFPGKTSSKKK 60
           +E  DDEY+ ++ +  DE DSDF+ DE  EP  + E E   R   K+R++        K 
Sbjct: 39  EESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRR---KRRVVTKAYKEPLKS 98

Query: 61  NKKRAVLKIETP--SKDEASTDHS-TPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDA 120
            + R   K+ TP  S  +A  + +  P E  D   D+      RKS R S    +  R  
Sbjct: 99  LRPR---KVNTPAGSSQKAREEKALLPLELQDDGSDS------RKSMRQS--TAEHTRQT 158

Query: 121 IRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVH 180
                +   +  +RK P  E+ ++QE++L EA  TE +NLR+LE    R E  KK+ +  
Sbjct: 159 FLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLE-TYERLEADKKKQVHK 218

Query: 181 KDVYSGPRIRYLSIN-----------------------------------------GCS- 240
           K    GP I Y S+                                           CS 
Sbjct: 219 KRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSR 278

Query: 241 -YLEFSKGSSFQAELSTASVP-YPEKNVCVITGLPARYRDPKTGLPYATKEAFKRIRERF 252
            ++ FS  ++F+        P  P + VC +T  PA YRDP T +PYAT  AFK IRE +
Sbjct: 279 TFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAY 323

[Close]

BLAST of MS017938 vs. ExPASy Swiss-Prot
Match: Q62481 (Vacuolar protein sorting-associated protein 72 homolog OS=Mus musculus OX=10090 GN=Vps72 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-06
Identity = 90/304 (29.61%), Postives = 129/304 (42.43%), Query Frame = 0


Query: 1   QEENDDEYE-EEPEIADEFDSDFNEDE-PEPEEEAENEADDRTQTKKRLIFPGKTSSKKK 60
           +E  DDEY+ ++ +  DE DSDF+ DE  EP  + E E   R   K+R++        K 
Sbjct: 39  EESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRR---KRRVVTKAYKEPLKS 98

Query: 61  NKKRAVLKIETP-SKDEASTDHST--PPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDA 120
            + R   K+ TP S  + + +  T  P E  D   D+      RKS R S    +  R  
Sbjct: 99  LRPR---KVSTPASSSQKAREEKTLLPLELQDDGSDS------RKSMRQS--TAEHTRQT 158

Query: 121 IRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVH 180
                +   +  +RK P  E+ ++QE++L EA  TE +NLR+LE    R E  KK+ +  
Sbjct: 159 FLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLE-TYERLEADKKKQVHK 218

Query: 181 KDVYSGPRIRYLSIN--------------------------------------------- 240
           K    GP I Y S+                                              
Sbjct: 219 KRKCPGPIITYHSVTVPLVGEPGPKEENVDVEGLDPAPTASALAPHAGTGTGAAAATPPA 278

Query: 241 GCS--YLEFSKGSSFQAELSTASVP-YPEKNVCVITGLPARYRDPKTGLPYATKEAFKRI 252
            CS  ++ FS  ++F+        P  P + VC +T  PA YRDP T +PYAT  AFK I
Sbjct: 279 HCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKII 327

[Close]

BLAST of MS017938 vs. ExPASy TrEMBL
Match: A0A6J1DZB8 (SWR1 complex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111025980 PE=3 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 1.5e-159
Identity = 307/312 (98.40%), Postives = 309/312 (99.04%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           +EENDDEYEEEPEIADEFDSDFNEDE EPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK
Sbjct: 47  EEENDDEYEEEPEIADEFDSDFNEDESEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KRAV KIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRAVSKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRIRYLSI+GCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIRYLSISGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF
Sbjct: 287 KEAFKTIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPAIDSELSD
Sbjct: 347 RQIPAIDSELSD 358

[Close]

BLAST of MS017938 vs. ExPASy TrEMBL
Match: A0A6J1HZS7 (SWR1 complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469126 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.4e-141
Identity = 280/312 (89.74%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEAD+RTQTKKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEADERTQTKKRLIFPGKTPSKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KR V KIE  SKDEASTD STPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIV K VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVQKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI+YLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRIQYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGA K+MDMGYLFA+LSGKGFSARRKRS  QNKN + YLR FSRF
Sbjct: 287 KEAFKTIRERFADDGMGA-KEMDMGYLFATLSGKGFSARRKRSTPQNKNEISYLRPFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS+LSD
Sbjct: 347 RQIPAFDSDLSD 357

[Close]

BLAST of MS017938 vs. ExPASy TrEMBL
Match: A0A6J1EM84 (SWR1 complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111435683 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.7e-140
Identity = 280/312 (89.74%), Postives = 289/312 (92.63%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEAD+RTQTKKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEADERTQTKKRLIFPGKTPSKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KR V KIE  SKDEASTD STPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRVVSKIEKSSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIV K VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVQKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI+YLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGL ARYRDPKTGLPYAT
Sbjct: 227 GPRIQYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLRARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADDGMGA K+MDMGYLFASLSGKGFSARRKRS  QNKN + YLR FSRF
Sbjct: 287 KEAFKTIRERFADDGMGA-KEMDMGYLFASLSGKGFSARRKRSTPQNKNEISYLRPFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS+LSD
Sbjct: 347 RQIPAFDSDLSD 357

[Close]

BLAST of MS017938 vs. ExPASy TrEMBL
Match: A0A1S3CUJ8 (SWR1 complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504701 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.5e-138
Identity = 277/312 (88.78%), Postives = 287/312 (91.99%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ADEFDSDFNEDE EPEEEAENEA++RTQ KKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVADEFDSDFNEDESEPEEEAENEAEERTQMKKRLIFPGKT-SKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KRAV KIE PSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRAVSKIEKPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQE+MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHK VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI YLS NGCSYLEFSKGSSFQAELST SVPYPEK  CVITGLPARYRDPKTGLPYAT
Sbjct: 227 GPRICYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAACVITGLPARYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADD   AK+ MDMGYLFASLSG GFSARRKRS  QNKN M Y RHFSRF
Sbjct: 287 KEAFKTIRERFADDSSVAKQ-MDMGYLFASLSGSGFSARRKRSTPQNKNEMSYSRHFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIPA DS++SD
Sbjct: 347 RQIPAFDSDISD 356

[Close]

BLAST of MS017938 vs. ExPASy TrEMBL
Match: A0A0A0KN54 (YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G168770 PE=3 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 2.3e-136
Identity = 273/312 (87.50%), Postives = 285/312 (91.35%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           ++E DDEYEEEPE+ DEFDSDFNEDE EPEEEAENEAD+R Q KKRLIFPGKT SK KNK
Sbjct: 47  EDEVDDEYEEEPEVVDEFDSDFNEDESEPEEEAENEADERPQMKKRLIFPGKT-SKNKNK 106

Query: 61  KRAVLKIETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 120
           KRAV K+E PSKDEASTD STPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL
Sbjct: 107 KRAVSKVEKPSKDEASTDQSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAERDAIRAAL 166

Query: 121 QATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKDVYS 180
           QATMKPIKRKNPGEEKKMSQE+MLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHK VY+
Sbjct: 167 QATMKPIKRKNPGEEKKMSQEEMLLEAAQTEIMNLRNLERVLAREEEVKKRAIVHKAVYN 226

Query: 181 GPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPKTGLPYAT 240
           GPRI+YLS NGCSYLEFSKGSSFQAELST SVPYPEK VCVITGLPA+YRDPKTGLPYAT
Sbjct: 227 GPRIQYLSRNGCSYLEFSKGSSFQAELSTTSVPYPEKAVCVITGLPAKYRDPKTGLPYAT 286

Query: 241 KEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPYLRHFSRF 300
           KEAFK IRERFADD   A K+MDMG LFASLSG GFSARRKRS  QNKN M YLRHFSRF
Sbjct: 287 KEAFKTIRERFADDSTVA-KEMDMGELFASLSGNGFSARRKRSAPQNKNEMSYLRHFSRF 346

Query: 301 RQIPAIDSELSD 313
           RQIP  DS++SD
Sbjct: 347 RQIPVFDSDVSD 356

[Close]

BLAST of MS017938 vs. TAIR 10
Match: AT2G36740.1 (sequence-specific DNA binding transcription factors;DNA binding;DNA binding )

HSP 1 Score: 335.1 bits (858), Expect = 6.0e-92
Identity = 193/307 (62.87%), Postives = 235/307 (76.55%), Query Frame = 0


Query: 1   QEENDDEYEEEPEIADEFDSDFNEDEPEPEEEAENEADDRTQTKKRLIFPGKTSSKKKNK 60
           +EE+DDEYE E E+ADEFDSDFN+DEPEP+  A NE + R   KKRLI+PGKT+SKKK K
Sbjct: 46  EEEHDDEYEAEREVADEFDSDFNDDEPEPDAVAVNEKELRDLPKKRLIYPGKTASKKKKK 105

Query: 61  KRAVLK-------IETPSKDEASTDHSTPPEHHDTPDDTEVERTVRKSTRTSVIVRQAER 120
           K  V+         E P  +E         E ++  +D E E+ +RKSTRTSV+VRQAER
Sbjct: 106 KTKVVSQLEYIPGDEKPG-EELGNKEQEEKEENEAQEDMEGEKVIRKSTRTSVVVRQAER 165

Query: 121 DAIRAALQATMKPIKRKNPGEEKKMSQEDMLLEAAQTEIMNLRNLERVLAREEEVKKRAI 180
           DA+RAA+QAT KPI+RK  GEEK+M+QE+MLLEAAQTEIMNLRNLERVLAREEEVKK+AI
Sbjct: 166 DALRAAIQATTKPIQRKKVGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAI 225

Query: 181 VHKDVYSGPRIRYLSINGCSYLEFSKGSSFQAELSTASVPYPEKNVCVITGLPARYRDPK 240
           VHK VY GP+IRY S +GC+YLEF  G+SF +ELST SVPYPEK VCVITGLPA+YRDPK
Sbjct: 226 VHKAVYKGPQIRYHSKDGCNYLEFCNGASFNSELSTKSVPYPEKAVCVITGLPAKYRDPK 285

Query: 241 TGLPYATKEAFKRIRERFADDGMGAKKDMDMGYLFASLSGKGFSARRKRSMLQNKNRMPY 300
           TGLPYAT++AFK IRERF D+  G +K M+MG LF +L  KGF+ ++KR+ +   N+   
Sbjct: 286 TGLPYATRDAFKAIRERFMDEHDGLRKKMEMGDLFDTLVAKGFATKQKRTKIPKSNKSFS 345

The following BLAST results are available for this feature:

BLAST of MS017938 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159622.1	3.1e-159	98.40	SWR1 complex subunit 2 [Momordica charantia] >XP_022159623.1 SWR1 complex subuni...	[more]
XP_038907261.1	7.0e-143	90.38	SWR1 complex subunit 2 isoform X1 [Benincasa hispida] >XP_038907262.1 SWR1 compl...	[more]
XP_023550830.1	5.0e-141	90.06	SWR1 complex subunit 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022970136.1	1.1e-140	89.74	SWR1 complex subunit 2 [Cucurbita maxima] >XP_022970137.1 SWR1 complex subunit 2...	[more]
KAG6579641.1	1.5e-140	89.74	SWR1 complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS017938 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IP06	8.4e-91	62.87	SWR1 complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=SWC2 PE=1 SV=1	[more]
Q5E9F6	1.5e-07	29.33	Vacuolar protein sorting-associated protein 72 homolog OS=Bos taurus OX=9913 GN=...	[more]
Q9VKM6	4.4e-07	27.78	Vacuolar protein sorting-associated protein 72 homolog OS=Drosophila melanogaste...	[more]
Q15906	1.7e-06	30.00	Vacuolar protein sorting-associated protein 72 homolog OS=Homo sapiens OX=9606 G...	[more]
Q62481	1.7e-06	29.61	Vacuolar protein sorting-associated protein 72 homolog OS=Mus musculus OX=10090 ...	[more]

BLAST of MS017938 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZB8	1.5e-159	98.40	SWR1 complex subunit 2 OS=Momordica charantia OX=3673 GN=LOC111025980 PE=3 SV=1	[more]
A0A6J1HZS7	5.4e-141	89.74	SWR1 complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111469126 PE=3 SV=1	[more]
A0A6J1EM84	2.7e-140	89.74	SWR1 complex subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111435683 PE=3 SV=1	[more]
A0A1S3CUJ8	2.5e-138	88.78	SWR1 complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504701 PE=3 SV=1	[more]
A0A0A0KN54	2.3e-136	87.50	YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G168770 PE=3 ...	[more]

BLAST of MS017938 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36740.1	6.0e-92	62.87	sequence-specific DNA binding transcription factors;DNA binding;DNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..102
IPR013272	Vps72/YL1, C-terminal	SMART	SM00993	YL1_C_2	coord: 218..247 e-value: 1.1E-15 score: 68.1
IPR013272	Vps72/YL1, C-terminal	PFAM	PF08265	YL1_C	coord: 219..247 e-value: 5.8E-17 score: 61.1
IPR008895	Vps72/YL1 family	PFAM	PF05764	YL1	coord: 2..188 e-value: 1.4E-24 score: 87.6
IPR008895	Vps72/YL1 family	PANTHER	PTHR13275	YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1	coord: 2..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017938.1	MS017938.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0043486	histone exchange
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus