MS017880 (gene) Bitter gourd (TR) v1

Overview
NameMS017880
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold373: 3494328 .. 3494654 (+)
RNA-Seq ExpressionMS017880
SyntenyMS017880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCATCATCTTCAGCACAGGGAAAAAGTCGCTGATATTGGGTTTCCCAGATTCTTCCAACACTCCCCTCAAAGTCTCATTAAATTCTTTCGCCATTTCAGAATTCGGGTCCGCCAAATCCACCGACCAAATGGAGTTCGACATCATATTAAGCGTCGTCGCAAACACAGCTCCTCCTATGTCCACCGCCGCGCCGCTCACGGCGCTTTGCCGGATATTTGCCAGAAGGTCCTCCAGCTTGGCGCGGCGCAGGATCTCATTGGCGTCGAGAATGTTGGGGGCAAAAAGGCGGGTGTTGTAAATTCTTCGAATGTTTCTCCAAATGGG

mRNA sequence

ATCCATCATCTTCAGCACAGGGAAAAAGTCGCTGATATTGGGTTTCCCAGATTCTTCCAACACTCCCCTCAAAGTCTCATTAAATTCTTTCGCCATTTCAGAATTCGGGTCCGCCAAATCCACCGACCAAATGGAGTTCGACATCATATTAAGCGTCGTCGCAAACACAGCTCCTCCTATGTCCACCGCCGCGCCGCTCACGGCGCTTTGCCGGATATTTGCCAGAAGGTCCTCCAGCTTGGCGCGGCGCAGGATCTCATTGGCGTCGAGAATGTTGGGGGCAAAAAGGCGGGTGTTGTAAATTCTTCGAATGTTTCTCCAAATGGG

Coding sequence (CDS)

ATCCATCATCTTCAGCACAGGGAAAAAGTCGCTGATATTGGGTTTCCCAGATTCTTCCAACACTCCCCTCAAAGTCTCATTAAATTCTTTCGCCATTTCAGAATTCGGGTCCGCCAAATCCACCGACCAAATGGAGTTCGACATCATATTAAGCGTCGTCGCAAACACAGCTCCTCCTATGTCCACCGCCGCGCCGCTCACGGCGCTTTGCCGGATATTTGCCAGAAGGTCCTCCAGCTTGGCGCGGCGCAGGATCTCATTGGCGTCGAGAATGTTGGGGGCAAAAAGGCGGGTGTTGTAAATTCTTCGAATGTTTCTCCAAATGGG

Protein sequence

IHHLQHREKVADIGFPRFFQHSPQSLIKFFRHFRIRVRQIHRPNGVRHHIKRRRKHSSSYVHRRAAHGALPDICQKVLQLGAAQDLIGVENVGGKKAGVVNSSNVSPNG
Homology
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BLAST of MS017880 vs. ExPASy TrEMBL
Match: A0A0A0KKP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157270 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 0 

Query: 1   IHHLQHREKVADIGFPRFFQHSPQSLIKFFRHFRIRVRQIHRPNGVRHHIKRRRKHSSSY 60
           I  LQ  + ++ I F  FF     S +K   +FRIRV +I R NG+   I R  K   S 
Sbjct: 46  IKSLQQWKIISKIRFRSFFHSPSYSHLKLSPNFRIRVHKILRENGIPKQIHRSHKRHFSK 105

Query: 61  VHRRAAHGALPD-ICQKVLQLGAAQDLIGVENVGGKKAGVVNSSNVSP 108
           +H      +    +C ++  L +++ L+GVEN G ++ GV NSS VSP
Sbjct: 106 IHCLITFQSTSRYLCHQLCHLASSEVLVGVENPGSEQLGVANSSEVSP 153

The following BLAST results are available for this feature:
BLAST of MS017880 vs.
Match NameE-valueIdentityDescription
BLAST of MS017880 vs.
Match NameE-valueIdentityDescription
BLAST of MS017880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKP24.4e-0536.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157270 PE=4 SV=1[more]
BLAST of MS017880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017880.1MS017880.1mRNA