MS017859 (gene) Bitter gourd (TR) v1

Overview


Name	MS017859
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S20
Location	scaffold373: 3289947 .. 3291712 (-)
RNA-Seq Expression	MS017859
Synteny	MS017859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAAGGGTAACTCCTTACCTCTGTTTAGAACCAAGTCGCATTGGTTATTCCATAGTGTGCAAGTAGATTATATATCTTCTCCGGATCTCATGGTTTGAAGTTATTGACGAGGCTCGTTTATCTGTTGGCTTTACGTTTTTGTAATGTGTTTCTGAAATATATGGGTTCTTCACATTCGCGCTATTGTTCTTGTAGTTGTTGGTAATTCGTTGGCTTTTCACCTTTTATATTCCACTTGTTTGTAACATTATAATTATTGAATTGTTATTCATATCGTGGCCTTCGATTTCATGTTGCTGCTCTGGGCGAGTCTTCAATGATAGGGTTGAGCCTCTTCGGGTTTTAGGATATGTTTGTACAAATAATTGAGATTTGATTTCTTGATGTGTTCAGTTTTGTGAATGTTATCGCAATCCTCACTTTTAGTGGGTTCACTCCATTTTTTAATCGTCAGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTGGCGAAGGTAATTTTGATTCAATGCTGAACTTGAGAATAATCGTGAACTGATCAACTAACTTATAAAACATTTGTATGTATGTAGTTAAATTTGTATCCTTAATTTGGAATCTTCTTGATCTTTGTTACCTCTGGATCAAGCACTCACCTGTACTTCTCCCCCATATCTCTCGTTCCATCTGCCATTTATCATTTTCTGGGATTGGCTGGTGATGTTAGTTAAATATTCATTCGTCATGATATCTGGAGTTTCACACCATGTGTTATAGTGTGGTAGTCCTGCTTCTCCCTCTCCTCGCTCCATGTGTACAGTGCCGTTAGACCTGTTATTGTTTTTCGTACTCAAACTTTGGTGGCGCAAGTTATGATGATTCAGACACTGCATTGAAATAGAATCATTAATTGACCTTGCAACTATAGAAAATAAGCCAAAATTTTTTATGAATGTGAGATCTGTAAGTTATTTGGGATTATGCTGTGACGAGTTTTACAAACTTTTGAGTTTATTATTATGTCTTATGTGAAGTAAGAATCTTGTCTTACATTGGATATGACACCATTTTAAGTTTATTATTCCATCTTTCGGGTCAAGGGGAGATTTTTGTGGCAGACATGTTTCTATTTTGTGTGGGGATTTGAATTGAGCGAAATAATAGAATCTTTAGAGGTAGAGAGATCCATGGAGTATTTTGGGAGATTATTAGATTTAATACTTCCCTTTGGATTGGTTTCTAAGTTTTTTTTTTTTTAATAATTACCAGCGAGGTGTTATCCTTTTGGTTTAGAGTCCCTTTCTATCGATGGGCCTCTTCTATTTGGGTAGTTTTTTTTGTATGCCCTTTTTTTTGCCTCTTTTGTTGACGATGTCTAACACAAGTTGTGGTATTCTTTTACTAAGGAAGCCAAGTTACCTTTTAGATCCAGCCTGAAAACTGGTTGCCAATCTTTTACTATTGTTGCAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT

mRNA sequence

ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAAGGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTGGCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT

Coding sequence (CDS)

ATGGCGTATGCTGCGATGAAGACTACGAAGCCTGGTTTGGAGGAGTCACAGGAGCAGATCCACAAGATTAGGATCACTCTTTCGTCCAAGAACGTCAAGAACCTTGAGAAGGTTTGTACCGATTTGGTTCGGGGAGCCAAGGACAAGAGACTGAGGGTTAAAGGGCCTGTGAGGATGCCAACAAAAGTCCTGCACATTACCACCAGGAAGTCTCCCTGTGGCGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCAGCTGATGTTGTTAAGCAGATTACATCTATCACCATTGAACCAGGTGTTGAGGTTGAAGTCACAATTGCAGAT

Protein sequence

MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD

Homology

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BLAST of MS017859 vs. NCBI nr
Match: XP_022159765.1 (40S ribosomal protein S20-2 [Momordica charantia] >XP_022159766.1 40S ribosomal protein S20-2 [Momordica charantia])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MS017859 vs. NCBI nr
Match: XP_015878354.1 (40S ribosomal protein S20-2 [Ziziphus jujuba] >XP_015878355.1 40S ribosomal protein S20-2 [Ziziphus jujuba])

HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKATKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MS017859 vs. NCBI nr
Match: XP_006421732.1 (40S ribosomal protein S20-2 [Citrus clementina] >XP_006495151.1 40S ribosomal protein S20-2 [Citrus sinensis] >GAY41358.1 hypothetical protein CUMW_058860 [Citrus unshiu] >ESR34972.1 hypothetical protein CICLE_v10006225mg [Citrus clementina] >ESR34973.1 hypothetical protein CICLE_v10006225mg [Citrus clementina] >GAY41359.1 hypothetical protein CUMW_058860 [Citrus unshiu])

HSP 1 Score: 233.4 bits (594), Expect = 1.0e-57
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEE+QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MS017859 vs. NCBI nr
Match: XP_011086523.1 (40S ribosomal protein S20-2-like [Sesamum indicum] >XP_012488472.1 PREDICTED: 40S ribosomal protein S20-2-like [Gossypium raimondii] >XP_016686565.1 40S ribosomal protein S20-2 [Gossypium hirsutum] >XP_038683410.1 40S ribosomal protein S20-2 [Tripterygium wilfordii] >XP_038708346.1 40S ribosomal protein S20-2 [Tripterygium wilfordii] >XP_039060993.1 40S ribosomal protein S20-2-like [Hibiscus syriacus] >KAA3476004.1 40S ribosomal protein S20-2 [Gossypium australe] >KAB2001625.1 hypothetical protein ES319_D11G006400v1 [Gossypium barbadense] >KAF5959805.1 hypothetical protein HYC85_001014 [Camellia sinensis] >MBA0559327.1 hypothetical protein [Gossypium lobatum] >MBA0616680.1 hypothetical protein [Gossypium davidsonii] >MBA0714244.1 hypothetical protein [Gossypium laxum] >MBA0801619.1 hypothetical protein [Gossypium harknessii] >MBA0831067.1 hypothetical protein [Gossypium armourianum] >MBA0859408.1 hypothetical protein [Gossypium schwendimanii] >TYG43335.1 hypothetical protein ES288_D11G008100v1 [Gossypium darwinii] >TYH41648.1 hypothetical protein ES332_D11G007700v1 [Gossypium tomentosum] >TYI53487.1 hypothetical protein E1A91_D11G007600v1 [Gossypium mustelinum])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MS017859 vs. NCBI nr
Match: XP_010108442.1 (40S ribosomal protein S20-2 [Morus notabilis] >XP_010108443.1 40S ribosomal protein S20-2 [Morus notabilis] >EXC19483.1 40S ribosomal protein S20-2 [Morus notabilis] >EXC19484.1 40S ribosomal protein S20-2 [Morus notabilis])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEE QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEPQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-55
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

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BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 110/120 (91.67%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
           AY  MK  K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 3.7e-50
Identity = 103/122 (84.43%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MAYA-AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRM 60
           +AYA  MK+ K G E SQE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 AD 122
           +D
Sbjct: 126 SD 127

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BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-41
Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 5   AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of MS017859 vs. ExPASy Swiss-Prot
Match: P60866 (40S ribosomal protein S20 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-41
Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 5   AMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]

BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A6J1DZP4 (40S ribosomal protein S20-2 OS=Momordica charantia OX=3673 GN=LOC111026092 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A6P3ZG25 (40S ribosomal protein S20-2 OS=Ziziphus jujuba OX=326968 GN=LOC107414707 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKATKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A2H5NMF8 (Ribosomal_S10 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_058860 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.9e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEE+QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. ExPASy TrEMBL
Match: V4S3T5 (Ribosomal_S10 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10006225mg PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.9e-58
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEE+QEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. ExPASy TrEMBL
Match: A0A2P5R6Y8 (Ribosomal_S10 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G006400v1 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.4e-58
Identity = 118/121 (97.52%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAYAAMK TKPGLEESQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MAYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60
           MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of MS017859 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.8 bits (543), Expect = 7.8e-56
Identity = 110/120 (91.67%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
           AY  MK  K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]

BLAST of MS017859 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 213.8 bits (543), Expect = 7.8e-56
Identity = 110/120 (91.67%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 2   AYAAMKTTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 61
           AY  MK  K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:

BLAST of MS017859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159765.1	2.4e-59	100.00	40S ribosomal protein S20-2 [Momordica charantia] >XP_022159766.1 40S ribosomal ...	[more]
XP_015878354.1	3.5e-58	98.35	40S ribosomal protein S20-2 [Ziziphus jujuba] >XP_015878355.1 40S ribosomal prot...	[more]
XP_006421732.1	1.0e-57	97.52	40S ribosomal protein S20-2 [Citrus clementina] >XP_006495151.1 40S ribosomal pr...	[more]
XP_011086523.1	1.7e-57	97.52	40S ribosomal protein S20-2-like [Sesamum indicum] >XP_012488472.1 PREDICTED: 40...	[more]
XP_010108442.1	1.7e-57	97.52	40S ribosomal protein S20-2 [Morus notabilis] >XP_010108443.1 40S ribosomal prot...	[more]

BLAST of MS017859 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STY6	2.2e-55	91.74	40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1	[more]
P49200	1.1e-54	91.67	40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2	[more]
P35686	3.7e-50	84.43	40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2...	[more]
Q3ZBH8	1.8e-41	70.09	40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1	[more]
P60866	1.8e-41	70.09	40S ribosomal protein S20 OS=Homo sapiens OX=9606 GN=RPS20 PE=1 SV=1	[more]

BLAST of MS017859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZP4	1.2e-59	100.00	40S ribosomal protein S20-2 OS=Momordica charantia OX=3673 GN=LOC111026092 PE=3 ...	[more]
A0A6P3ZG25	1.7e-58	98.35	40S ribosomal protein S20-2 OS=Ziziphus jujuba OX=326968 GN=LOC107414707 PE=3 SV...	[more]
A0A2H5NMF8	4.9e-58	97.52	Ribosomal_S10 domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_058860...	[more]
V4S3T5	4.9e-58	97.52	Ribosomal_S10 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v...	[more]
A0A2P5R6Y8	8.4e-58	97.52	Ribosomal_S10 domain-containing protein OS=Gossypium barbadense OX=3634 GN=ES319...	[more]

BLAST of MS017859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47370.2	1.6e-56	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.1	1.6e-56	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.3	1.6e-56	91.74	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	7.8e-56	91.67	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	7.8e-56	91.67	Ribosomal protein S10p/S20e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 79..93 score: 52.69 coord: 22..35 score: 44.51 coord: 57..72 score: 42.43
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..121
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 20..119 score: 18.429222
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 24..118 e-value: 5.2E-38 score: 142.3
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 24..118 e-value: 4.8E-28 score: 97.3
IPR005729	Ribosomal protein S10, eukaryotic/archaeal	TIGRFAM	TIGR01046	TIGR01046	coord: 21..119 e-value: 2.2E-40 score: 135.0
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 5..121 e-value: 4.0E-49 score: 167.5
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 22..119
None	No IPR available	PANTHER	PTHR11700:SF27	RIBOSOMAL PROTEIN S10-RELATED	coord: 1..121
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017859.1	MS017859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome