MS017809 (gene) Bitter gourd (TR) v1

Overview


Name	MS017809
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	BURP domain protein
Location	scaffold373: 2713901 .. 2714129 (-)
RNA-Seq Expression	MS017809
Synteny	MS017809

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCATCCGCGAGTCGTCGAAAAAATATCCATTTTCTCCTCAACAACTCCCTCAAATTATTGCTACATTCTCCATCGGACCTAATTTTAAGGACGCGGAGTTTATCCAAAGTACACTCGAGCAGTGTGAAAACTTGCGTCCTAAAGAATGAAGAGGAGTCTATCGTTGATCTCGCCACCACCAAGCTTGGGAAGAAAGTCATGGCATCCTCAACCCAAGTTGATAGA

mRNA sequence

TTCTTCATCCGCGAGTCGTCGAAAAAATATCCATTTTCTCCTCAACAACTCCCTCAAATTATTGCTACATTCTCCATCGGACCTAATTTTAAGGACGCGGAGTTTATCCAAAGTACACTCGAGCAGTGTGAAACTTGCGTCCTAAAGAATGAAGAGGAGTCTATCGTTGATCTCGCCACCACCAAGCTTGGGAAGAAAGTCATGGCATCCTCAACCCAAGTTGATAGA

Coding sequence (CDS)

TTCTTCATCCGCGAGTCGTCGAAAAAATATCCATTTTCTCCTCAACAACTCCCTCAAATTATTGCTACATTCTCCATCGGACCTAATTTTAAGGACGCGGAGTTTATCCAAAGTACACTCGAGCAGTGTGAAACTTGCGTCCTAAAGAATGAAGAGGAGTCTATCGTTGATCTCGCCACCACCAAGCTTGGGAAGAAAGTCATGGCATCCTCAACCCAAGTTGATAGA

Protein sequence

FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEEESIVDLATTKLGKKVMASSTQVDR

Homology

[Close]

BLAST of MS017809 vs. NCBI nr
Match: PSR91794.1 (BURP domain protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R+ ++K PFS +++P+I++ FS+ P+ K+AE ++ T+++CE   +K EE       E
Sbjct: 160 FLPRQVAEKIPFSSEKMPEIMSYFSVKPDSKEAEIMKKTVKECEEPEIKGEEKYCATSLE 219

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T KLGK +   ST+VDR
Sbjct: 220 SMVDFSTNKLGKNIQGVSTEVDR 242

[Close]

BLAST of MS017809 vs. NCBI nr
Match: TXG62057.1 (hypothetical protein EZV62_013420 [Acer yangbiense])

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-08
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R+ +K  PFS  ++P+I+  FS+ P   +A+ +Q+T+++CE   +K EE       E
Sbjct: 199 FLPRQVAKSIPFSSNKMPEILNRFSVKPGSLEADIMQNTIKECEEAGIKGEEKYCATSLE 258

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T+KLGKKV A ST+V++
Sbjct: 259 SMVDFSTSKLGKKVQAISTEVEK 281

[Close]

BLAST of MS017809 vs. NCBI nr
Match: PLY67903.1 (hypothetical protein LSAT_1X49041 [Lactuca sativa])

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R+ +   PFS  +LPQI   FSI P+  +AE ++ TL QCE+  +K EE       E
Sbjct: 154 FLPRQIADSIPFSSNKLPQIYNKFSIKPDSLEAEIMKQTLNQCESKGIKGEEKYCATSLE 213

Query: 61  SIVDLATTKLGKKVMASSTQVD 76
           S+VD +TTKLGKKV A ST+V+
Sbjct: 214 SMVDFSTTKLGKKVKAISTEVN 235

[Close]

BLAST of MS017809 vs. NCBI nr
Match: PSS17806.1 (BURP domain protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R  ++K PFS +++P+I+  FS+ P+ K+AE +++T+++CE   +K EE       E
Sbjct: 132 FLPRRVAEKIPFSSEKMPEIMNYFSVKPDSKEAEIMKNTVKECEEPGIKGEEKYCATSLE 191

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T KLGK V   ST+VDR
Sbjct: 192 SMVDFSTDKLGKNVQGVSTEVDR 214

[Close]

BLAST of MS017809 vs. NCBI nr
Match: GFS44922.1 (BURP domain-containing protein [Actinidia rufa])

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R  ++K PFS +++P+I+  FS+ P+ K+AE +++T+++CE   +K EE       E
Sbjct: 132 FLPRRIAEKIPFSSEKMPEIMNYFSVKPDSKEAEIMKNTVKECEEPGIKGEEKYCATSLE 191

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T KLGK V   ST+VDR
Sbjct: 192 SMVDFSTDKLGKNVQGVSTEVDR 214

[Close]

BLAST of MS017809 vs. ExPASy Swiss-Prot
Match: Q942D4 (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=BURP3 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-04
Identity = 29/84 (34.52%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R  +   PFS +++P+I++ FS+ P   +A  +  TL  CE    + E        E
Sbjct: 238 FLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLE 297

Query: 61  SIVDLATTKLG-KKVMASSTQVDR 77
           S+VD AT+ LG   V A+ST V +
Sbjct: 298 SMVDFATSSLGTSHVRAASTVVGK 321

[Close]

BLAST of MS017809 vs. ExPASy Swiss-Prot
Match: B9G9L9 (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=BURP17 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-04
Identity = 30/82 (36.59%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R  +   PFS ++LP+I+  F + P   DA  + +TL+ CE    K E+       E
Sbjct: 392 FLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLE 451

Query: 61  SIVDLATTKLG-KKVMASSTQV 75
           SIVD  T+  G   V A+ST V
Sbjct: 452 SIVDFVTSSFGASDVDAASTVV 473

[Close]

BLAST of MS017809 vs. ExPASy TrEMBL
Match: A0A2R6PIU6 (BURP domain protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc29141 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R+ ++K PFS +++P+I++ FS+ P+ K+AE ++ T+++CE   +K EE       E
Sbjct: 160 FLPRQVAEKIPFSSEKMPEIMSYFSVKPDSKEAEIMKKTVKECEEPEIKGEEKYCATSLE 219

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T KLGK +   ST+VDR
Sbjct: 220 SMVDFSTNKLGKNIQGVSTEVDR 242

[Close]

BLAST of MS017809 vs. ExPASy TrEMBL
Match: A0A5C7HY52 (BURP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013420 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R+ +K  PFS  ++P+I+  FS+ P   +A+ +Q+T+++CE   +K EE       E
Sbjct: 199 FLPRQVAKSIPFSSNKMPEILNRFSVKPGSLEADIMQNTIKECEEAGIKGEEKYCATSLE 258

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T+KLGKKV A ST+V++
Sbjct: 259 SMVDFSTSKLGKKVQAISTEVEK 281

[Close]

BLAST of MS017809 vs. ExPASy TrEMBL
Match: A0A7J0DXM4 (BURP domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0092900 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R  ++K PFS +++P+I+  FS+ P+ K+AE +++T+++CE   +K EE       E
Sbjct: 132 FLPRRIAEKIPFSSEKMPEIMNYFSVKPDSKEAEIMKNTVKECEEPGIKGEEKYCATSLE 191

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T KLGK V   ST+VDR
Sbjct: 192 SMVDFSTDKLGKNVQGVSTEVDR 214

[Close]

BLAST of MS017809 vs. ExPASy TrEMBL
Match: A0A2R6QZI5 (BURP domain protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12497 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R  ++K PFS +++P+I+  FS+ P+ K+AE +++T+++CE   +K EE       E
Sbjct: 132 FLPRRVAEKIPFSSEKMPEIMNYFSVKPDSKEAEIMKNTVKECEEPGIKGEEKYCATSLE 191

Query: 61  SIVDLATTKLGKKVMASSTQVDR 77
           S+VD +T KLGK V   ST+VDR
Sbjct: 192 SMVDFSTDKLGKNVQGVSTEVDR 214

[Close]

BLAST of MS017809 vs. ExPASy TrEMBL
Match: A0A2J6JYK8 (BURP domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_1X49041 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 1   FFIRESSKKYPFSPQQLPQIIATFSIGPNFKDAEFIQSTLEQCETCVLKNEE-------E 60
           F  R+ +   PFS  +LPQI   FSI P+  +AE ++ TL QCE+  +K EE       E
Sbjct: 154 FLPRQIADSIPFSSNKLPQIYNKFSIKPDSLEAEIMKQTLNQCESKGIKGEEKYCATSLE 213

Query: 61  SIVDLATTKLGKKVMASSTQVD 76
           S+VD +TTKLGKKV A ST+V+
Sbjct: 214 SMVDFSTTKLGKKVKAISTEVN 235

The following BLAST results are available for this feature:

BLAST of MS017809 vs. NCBI nr


Match Name	E-value	Identity	Description
PSR91794.1	9.4e-09	40.96	BURP domain protein [Actinidia chinensis var. chinensis]	[more]
TXG62057.1	2.1e-08	40.96	hypothetical protein EZV62_013420 [Acer yangbiense]	[more]
PLY67903.1	3.6e-08	47.56	hypothetical protein LSAT_1X49041 [Lactuca sativa]	[more]
PSS17806.1	3.6e-08	42.17	BURP domain protein [Actinidia chinensis var. chinensis]	[more]
GFS44922.1	3.6e-08	42.17	BURP domain-containing protein [Actinidia rufa]	[more]

BLAST of MS017809 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q942D4	2.5e-04	34.52	BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=BUR...	[more]
B9G9L9	3.2e-04	36.59	BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=BU...	[more]

BLAST of MS017809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R6PIU6	4.5e-09	40.96	BURP domain protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]
A0A5C7HY52	1.0e-08	40.96	BURP domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_013420 PE=...	[more]
A0A7J0DXM4	1.7e-08	42.17	BURP domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0092900 PE=...	[more]
A0A2R6QZI5	1.7e-08	42.17	BURP domain protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]
A0A2J6JYK8	1.7e-08	47.56	BURP domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_1X49041 PE=4 SV...	[more]

BLAST of MS017809 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004873	BURP domain	PFAM	PF03181	BURP	coord: 3..75 e-value: 1.5E-10 score: 41.0
IPR004873	BURP domain	PROSITE	PS51277	BURP	coord: 1..76 score: 9.50056
IPR044816	BURP domain-containing protein	PANTHER	PTHR31236	BURP DOMAIN PROTEIN USPL1-LIKE	coord: 1..75
None	No IPR available	PANTHER	PTHR31236:SF2	BURP DOMAIN PROTEIN RD22	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017809.1	MS017809.1	mRNA