MS017752 (gene) Bitter gourd (TR) v1

Overview


Name	MS017752
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RRM domain-containing protein
Location	scaffold373: 2174293 .. 2174838 (+)
RNA-Seq Expression	MS017752
Synteny	MS017752

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTGTCTTCTAGTTTTCCTTTTCTATATTGAAGTTTGTATCTACTTGTTTCAGAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTAGCCACTTCATTGCCTTTGTCAAGCAATTCCTTATTTTTGCCTGTAAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCGTGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGAT

mRNA sequence

ATGTATTTGTCTTCTAGTTTTCCTTCTATATTGAAGTTTGTATCTACTTGTTTCAGAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCGTGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGAT

Coding sequence (CDS)

ATGTATTTGTCTTCTAGTTTTCCTTCTATATTGAAGTTTGTATCTACTTGTTTCAGAGCGACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCCTGTGGCACACTCGCGGTCCGAAGCGTGGAGAGCCACGGGGATTCGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGCCCGTTGGTTGTACGCCTTGCAAGTGAGAAGTGCATGATCGACACAACAAAAAGTATTTCCCGAGCAGCAGGCGAGTCGAGCAAATCGAGACTTGGTGGCAGCAATTATGGACAGATGACTCGCACTGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTCTGGAAGGAGAGGCGGAGAGCTCGAGCTCTCGTGTGAAAAAACAGAAGCAAGATAACATCAGTTGCAGAGAT

Protein sequence

MYLSSSFPSILKFVSTCFRATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRD

Homology

[Close]

BLAST of MS017752 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 29  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 88

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES
Sbjct: 89  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 148

Query: 140 SSSRVKKQKQDNISCRD 157
           SSSRVKKQKQDNISCRD
Sbjct: 149 SSSRVKKQKQDNISCRD 165

[Close]

BLAST of MS017752 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 78  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 137

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES
Sbjct: 138 LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 197

Query: 140 SSSRVKKQKQDNISCRD 157
           SSSRVKKQKQDNISCRD
Sbjct: 198 SSSRVKKQKQDNISCRD 214

[Close]

BLAST of MS017752 vs. NCBI nr
Match: XP_022157809.1 (probable RNA-binding protein 18 isoform X2 [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 47  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 106

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES
Sbjct: 107 LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 166

Query: 140 SSSRVKKQKQDNISCRD 157
           SSSRVKKQKQDNISCRD
Sbjct: 167 SSSRVKKQKQDNISCRD 183

[Close]

BLAST of MS017752 vs. NCBI nr
Match: XP_011654647.1 (probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypothetical protein Csa_000614 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 116/137 (84.67%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           A LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 27  AALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 86

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEK M +TT   SR A ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ES
Sbjct: 87  LVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGES 146

Query: 140 SSSRVKKQKQDNISCRD 157
           SS  VKK KQDNIS +D
Sbjct: 147 SS--VKKPKQDNISYKD 161

[Close]

BLAST of MS017752 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           A LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 27  AALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 86

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEK M++T    S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ES
Sbjct: 87  LVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGES 146

Query: 140 SSSRVKKQKQDNISCRD 157
           SS  VKK KQDNIS +D
Sbjct: 147 SS--VKKPKQDNISFKD 161

[Close]

BLAST of MS017752 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-09
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +KEEA+ A + ++GKLA  + LV
Sbjct: 39  LVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERAIQCLNGKLALSKKLV 98

Query: 82  VRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAESSS 141
           VR A  +         +  A     S         ++   KI AI+ KL+ +E   +  S
Sbjct: 99  VRWAHAQRFEPFRGEKNMPASLEPSSSEAEDLPTSLSVNAKIRAIEAKLQMMEENPDDYS 158

[Close]

BLAST of MS017752 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-09
Identity = 38/118 (32.20%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +K EA+ A   ++GK+A  + LV
Sbjct: 41  LLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERAIHCLNGKMALSKKLV 100

Query: 82  VRLAS------EKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 134
           VR A       + C  +    IS     S++          ++ + KI AI+ KL+ +
Sbjct: 101 VRWAHAQIKRYDNCKNEKVLPISLEPSSSTE-----PTQSTLSVSAKIKAIEAKLKMM 153

[Close]

BLAST of MS017752 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.9e-09
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA  + LV
Sbjct: 41  LLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLV 100

Query: 82  VRLASEKCM----IDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 134
           VR A  +          K +  +   SS +    SN   ++ T KI AI+ KL+ +
Sbjct: 101 VRWAHAQVKRYDHNKNDKILPISLEPSSSTEPAQSN---LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of MS017752 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.0e-09
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA  + LV
Sbjct: 41  LLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLV 100

Query: 82  VRLA-SEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 134
           VR A ++    D  K+          S         ++ T KI AI+ KL+ +
Sbjct: 101 VRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMM 153

[Close]

BLAST of MS017752 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.0e-09
Identity = 38/113 (33.63%), Postives = 61/113 (53.98%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A + ++GKLA  + LV
Sbjct: 41  LLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAIQCLNGKLALSKKLV 100

Query: 82  VRLA-SEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRAL 134
           VR A ++    D  K+          S         ++ T KI AI+ KL+ +
Sbjct: 101 VRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMM 153

[Close]

BLAST of MS017752 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.2e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 78  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 137

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES
Sbjct: 138 LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 197

Query: 140 SSSRVKKQKQDNISCRD 157
           SSSRVKKQKQDNISCRD
Sbjct: 198 SSSRVKKQKQDNISCRD 214

[Close]

BLAST of MS017752 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.2e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 29  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 88

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES
Sbjct: 89  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 148

Query: 140 SSSRVKKQKQDNISCRD 157
           SSSRVKKQKQDNISCRD
Sbjct: 149 SSSRVKKQKQDNISCRD 165

[Close]

BLAST of MS017752 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.2e-68
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 47  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 106

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES
Sbjct: 107 LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 166

Query: 140 SSSRVKKQKQDNISCRD 157
           SSSRVKKQKQDNISCRD
Sbjct: 167 SSSRVKKQKQDNISCRD 183

[Close]

BLAST of MS017752 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.6e-54
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           A LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 59  AALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 118

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEK M++T    S+AA ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ES
Sbjct: 119 LVVRLASEKLMVNTANDTSKAASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGES 178

Query: 140 SSSRVKKQKQDNISCRD 157
           SS  VKK KQDNIS +D
Sbjct: 179 SS--VKKPKQDNISFKD 193

[Close]

BLAST of MS017752 vs. ExPASy TrEMBL
Match: A0A0A0KJM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.6e-54
Identity = 116/137 (84.67%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 20  ATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 79
           A LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP
Sbjct: 59  AALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRP 118

Query: 80  LVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNYGQMTRTDKIAAIKNKLRALEGEAES 139
           LVVRLASEK M +TT   SR A ES KSRLGGS+YGQ+TR+DKIAAIKNKLRALEG  ES
Sbjct: 119 LVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGES 178

Query: 140 SSSRVKKQKQDNISCRD 157
           SS  VKK KQDNIS +D
Sbjct: 179 SS--VKKPKQDNISYKD 193

[Close]

BLAST of MS017752 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 70  MHGKLACGRPLVVRLASEKCMIDTTKSIS-RAAGESSKSR-LGGSNYGQMTRTDKIAAIK 129
           MHG+LACGRPLVVRLASEK + D++   S R+  E +++R + GS+ GQM+R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 130 NKLRALEGEAESSSSRVKKQK 149
           NKL+ALE   E      KKQK
Sbjct: 61  NKLKALE---EDEKRDPKKQK 78

[Close]

BLAST of MS017752 vs. TAIR 10
Match: AT1G71770.1 (poly(A)-binding protein 5 )

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L +MFS +G + S   + +++G      RGF F+ YS+ EEA LA ++M+GK+   +PL 
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 417

Query: 82  VRLASEK 89
           V LA  K
Sbjct: 418 VALAQRK 420

[Close]

BLAST of MS017752 vs. TAIR 10
Match: AT1G71770.2 (poly(A)-binding protein 5 )

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L +MFS +G + S   + +++G      RGF F+ YS+ EEA LA ++M+GK+   +PL 
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 417

Query: 82  VRLASEK 89
           V LA  K
Sbjct: 418 VALAQRK 420

[Close]

BLAST of MS017752 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 22  LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLV 81
           L ++F  +G+I+S   + H    + G  +GF F+ +S+ EE+K AK  ++G L  G+P+V
Sbjct: 320 LREIFGCYGQIVSAKVMCH----ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 379

Query: 82  VRLASEK 89
           VR+A  K
Sbjct: 380 VRVAERK 382

[Close]

BLAST of MS017752 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 26/78 (33.33%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 11 LKFVSTCFRAT---LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAK 70
          L  ++  FR T   L  +F+ +GK++    ++  R  + G+ RGFAF+ Y  K+EA  A 
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVD---VFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 77

Query: 71 EKMHGKLACGRPLVVRLA 86
          E++ G++  GR + V+ A
Sbjct: 78 ERLDGRVVDGREITVQFA 92

The following BLAST results are available for this feature:

BLAST of MS017752 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157813.1	1.1e-67	100.00	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157798.1	1.1e-67	100.00	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]
XP_022157809.1	1.1e-67	100.00	probable RNA-binding protein 18 isoform X2 [Momordica charantia]	[more]
XP_011654647.1	1.2e-53	84.67	probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypot...	[more]
XP_008437528.1	1.2e-53	83.94	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]

BLAST of MS017752 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	1.4e-09	33.33	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q66J99	5.3e-09	32.20	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]
Q9CR83	6.9e-09	34.48	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q96H35	9.0e-09	33.63	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	9.0e-09	33.63	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]

BLAST of MS017752 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUC5	5.2e-68	100.00	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUD9	5.2e-68	100.00	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DXL8	5.2e-68	100.00	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7TLJ6	5.6e-54	83.94	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A0A0KJM9	5.6e-54	84.67	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV...	[more]

BLAST of MS017752 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	3.1e-12	54.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G71770.1	4.3e-06	40.30	poly(A)-binding protein 5	[more]
AT1G71770.2	4.3e-06	40.30	poly(A)-binding protein 5	[more]
AT3G16380.1	4.3e-06	37.31	poly(A) binding protein 6	[more]
AT5G64200.1	1.2e-05	33.33	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..156
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 19..154
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 19..154
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..83 e-value: 7.6E-7 score: 38.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..80 e-value: 2.4E-9 score: 36.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..87 score: 12.475058
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 13..96 e-value: 8.7E-16 score: 60.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 21..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017752.1	MS017752.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding