MS017738 (gene) Bitter gourd (TR) v1

Overview
NameMS017738
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold373: 2029211 .. 2029396 (-)
RNA-Seq ExpressionMS017738
SyntenyMS017738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCTGGCCTCGTCAAAACAATGGCAAGGAGGGAAGAATGATTCTGAGGGAGGGTCTGTGGTTACCAAAGAGAAATCACGCCCAATTGTAGCATTCAGTAAGCCTCCTCCATTTCCTCCCCTTCTTGGTCCATTGGCTATTTTCTCATTATTGGAAACATTTTTGAGTCGTGATGAAAATGATAAC

mRNA sequence

GCTCTGGCCTCGTCAAAACAATGGCAAGGAGGGAAGAATGATTCTGAGGGAGGGTCTGTGGTTACCAAAGAGAAATCACGCCCAATTGTAGCATTCAGTAAGCCTCCTCCATTTCCTCCCCTTCTTGGTCCATTGGCTATTTTCTCATTATTGGAAACATTTTTGAGTCGTGATGAAAATGATAAC

Coding sequence (CDS)

GCTCTGGCCTCGTCAAAACAATGGCAAGGAGGGAAGAATGATTCTGAGGGAGGGTCTGTGGTTACCAAAGAGAAATCACGCCCAATTGTAGCATTCAGTAAGCCTCCTCCATTTCCTCCCCTTCTTGGTCCATTGGCTATTTTCTCATTATTGGAAACATTTTTGAGTCGTGATGAAAATGATAAC

Protein sequence

ALASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDENDN
Homology
BLAST of MS017738 vs. NCBI nr
Match: KAA0042731.1 (hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 9.3e-15
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  ALASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEN 60
          +L S+ Q QG KNDSEG SVVTKEK+ PI AFSKPPP PPLLGPLA+ SLLET+LS D N
Sbjct: 26 SLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKPPPLPPLLGPLAVLSLLETYLSPDGN 85

Query: 61 DN 63
          D+
Sbjct: 86 DD 87

BLAST of MS017738 vs. NCBI nr
Match: KAE8647849.1 (hypothetical protein Csa_000256 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 7  QWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDENDN 63
          Q QG KNDSEG SVVTKEK+ PI AFS+PPP PPLLGPLA+FSLLET+LS D ND+
Sbjct: 26 QRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSPDGNDD 81

BLAST of MS017738 vs. NCBI nr
Match: KAB2632780.1 (hypothetical protein D8674_029027 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 2  LASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEND 61
          LASS   + G ND+  G +VTKEK++P+VAFS+PPP PP+ GPL + SLLET+ SRD ND
Sbjct: 27 LASSTPKKLGNNDNGEGGIVTKEKTQPMVAFSRPPPLPPVFGPLLLLSLLETWSSRDSND 86

Query: 62 N 63
          +
Sbjct: 87 D 87

BLAST of MS017738 vs. NCBI nr
Match: CAB4310384.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  ALASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEN 60
          ++A+S   + G ND   G +V KEK+ PIVAFS+PPP PP+ GPL + SLLET+ SRD N
Sbjct: 27 SVATSTPKRQGNNDPGEGGLVAKEKTEPIVAFSRPPPLPPVFGPLVLLSLLETWWSRDNN 86

Query: 61 DN 63
          D+
Sbjct: 87 DD 88

BLAST of MS017738 vs. NCBI nr
Match: XP_008238942.1 (PREDICTED: uncharacterized protein LOC103337557 [Prunus mume] >CAB4279964.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 2  LASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEND 61
          +A+S   + G ND   G +V KEK+ PIVAFS+PPP PP+ GPL + SLLET+ SRD ND
Sbjct: 28 VATSTPKRQGNNDPGEGGLVAKEKTEPIVAFSRPPPLPPVFGPLVLLSLLETWWSRDNND 87

Query: 62 N 63
          +
Sbjct: 88 D 88

BLAST of MS017738 vs. ExPASy TrEMBL
Match: A0A0A0KKH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 1  ALASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEN 60
          +L S+ Q QG KNDSEG SVVTKEK+ PI AFS+PPP PPLLGPLA+FSLLET+LS D N
Sbjct: 26 SLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSPDGN 85

Query: 61 DN 63
          D+
Sbjct: 86 DD 87

BLAST of MS017738 vs. ExPASy TrEMBL
Match: A0A5A7TME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002300 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.5e-15
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  ALASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEN 60
          +L S+ Q QG KNDSEG SVVTKEK+ PI AFSKPPP PPLLGPLA+ SLLET+LS D N
Sbjct: 26 SLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKPPPLPPLLGPLAVLSLLETYLSPDGN 85

Query: 61 DN 63
          D+
Sbjct: 86 DD 87

BLAST of MS017738 vs. ExPASy TrEMBL
Match: A0A5N5I573 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_029027 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.2e-11
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 2  LASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEND 61
          LASS   + G ND+  G +VTKEK++P+VAFS+PPP PP+ GPL + SLLET+ SRD ND
Sbjct: 27 LASSTPKKLGNNDNGEGGIVTKEKTQPMVAFSRPPPLPPVFGPLLLLSLLETWSSRDSND 86

Query: 62 N 63
          +
Sbjct: 87 D 87

BLAST of MS017738 vs. ExPASy TrEMBL
Match: A0A6J5XH38 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS32222 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  ALASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEN 60
          ++A+S   + G ND   G +V KEK+ PIVAFS+PPP PP+ GPL + SLLET+ SRD N
Sbjct: 27 SVATSTPKRQGNNDPGEGGLVAKEKTEPIVAFSRPPPLPPVFGPLVLLSLLETWWSRDNN 86

Query: 61 DN 63
          D+
Sbjct: 87 DD 88

BLAST of MS017738 vs. ExPASy TrEMBL
Match: A0A6J5UX06 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32648 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 2  LASSKQWQGGKNDSEGGSVVTKEKSRPIVAFSKPPPFPPLLGPLAIFSLLETFLSRDEND 61
          +A+S   + G ND   G +V KEK+ PIVAFS+PPP PP+ GPL + SLLET+ SRD ND
Sbjct: 28 VATSTPKRQGNNDPGEGGLVAKEKTEPIVAFSRPPPLPPVFGPLVLLSLLETWWSRDNND 87

Query: 62 N 63
          +
Sbjct: 88 D 88

BLAST of MS017738 vs. TAIR 10
Match: AT4G23493.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 9.3e-05
Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 12 KNDSEGGSVVTKEKS-RPIVAFSKPPPFPPLLGPLAIFSLLETFL-SRDEN 61
          +N SE  ++   E++  P+VA S+PPPF P +GP+ ++SLL+++  SRDE+
Sbjct: 36 ENISESETMKKMEETVEPMVALSRPPPFSPFVGPVLMYSLLQSWTSSRDED 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042731.19.3e-1572.58hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa][more]
KAE8647849.12.7e-1476.79hypothetical protein Csa_000256 [Cucumis sativus][more]
KAB2632780.11.1e-1059.02hypothetical protein D8674_029027 [Pyrus ussuriensis x Pyrus communis][more]
CAB4310384.11.2e-0954.84unnamed protein product [Prunus armeniaca][more]
XP_008238942.11.5e-0955.74PREDICTED: uncharacterized protein LOC103337557 [Prunus mume] >CAB4279964.1 unna... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KKH22.0e-1572.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1[more]
A0A5A7TME54.5e-1572.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5N5I5735.2e-1159.02Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A6J5XH385.7e-1054.84Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS32222 PE=... [more]
A0A6J5UX067.5e-1055.74Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32648 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT4G23493.19.3e-0543.14unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017738.1MS017738.1mRNA