MS017731 (gene) Bitter gourd (TR) v1

Overview
NameMS017731
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase RHA1B
Locationscaffold373: 1970677 .. 1971246 (-)
RNA-Seq ExpressionMS017731
SyntenyMS017731
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCCCTGCGAGCTATACGGAGCTTCTGCTTCCGAAGCTCTTCATCCACGTACTCTCCTTGCTCGGCCTCCTCCGGAAGCTAATTTTCGTCCTCTTCCGCCTTCTAGGGCTCCAAGATTTCCTCGAACCGGACATTCCATGGCCTAATCAGGCGGATTTCTTCCCGACGGGGCCGTCGTCAGACCTCGATCCAGTCTCCGCCGCCGTCCTGCGCGAGATTCTGCCGGTGGTGAAGTTCTCGGAGCTTTTGGAGCCGCCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTCGAGGCGGACGACGAGATCCGGCGCCTGGCGAACTGCCGCCACATATTCCACCGCGGATGCCTCGATCGGTGGATCGGATACGGCCAGAGGACGTGCCCGCTCTGCCGGACGGTGTTTATTCCGGCCGATTTGCGGAGCGGTGGTTGTAGCGATAGCGACGAGAGGATTTGGGAGGAGGATTCGGAAATCTTTGAACTACTACTCCACCACGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTCTTCTCACCGCTGGTTCG

mRNA sequence

ATGGGTTTCCCTGCGAGCTATACGGAGCTTCTGCTTCCGAAGCTCTTCATCCACGTACTCTCCTTGCTCGGCCTCCTCCGGAAGCTAATTTTCGTCCTCTTCCGCCTTCTAGGGCTCCAAGATTTCCTCGAACCGGACATTCCATGGCCTAATCAGGCGGATTTCTTCCCGACGGGGCCGTCGTCAGACCTCGATCCAGTCTCCGCCGCCGTCCTGCGCGAGATTCTGCCGGTGGTGAAGTTCTCGGAGCTTTTGGAGCCGCCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTCGAGGCGGACGACGAGATCCGGCGCCTGGCGAACTGCCGCCACATATTCCACCGCGGATGCCTCGATCGGTGGATCGGATACGGCCAGAGGACGTGCCCGCTCTGCCGGACGGTGTTTATTCCGGCCGATTTGCGGAGCGGTGGTTGTAGCGATAGCGACGAGAGGATTTGGGAGGAGGATTCGGAAATCTTTGAACTACTACTCCACCACGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTCTTCTCACCGCTGGTTCG

Coding sequence (CDS)

ATGGGTTTCCCTGCGAGCTATACGGAGCTTCTGCTTCCGAAGCTCTTCATCCACGTACTCTCCTTGCTCGGCCTCCTCCGGAAGCTAATTTTCGTCCTCTTCCGCCTTCTAGGGCTCCAAGATTTCCTCGAACCGGACATTCCATGGCCTAATCAGGCGGATTTCTTCCCGACGGGGCCGTCGTCAGACCTCGATCCAGTCTCCGCCGCCGTCCTGCGCGAGATTCTGCCGGTGGTGAAGTTCTCGGAGCTTTTGGAGCCGCCGGAGAGCTGCGCCGTGTGCCTGTACGAGTTCGAGGCGGACGACGAGATCCGGCGCCTGGCGAACTGCCGCCACATATTCCACCGCGGATGCCTCGATCGGTGGATCGGATACGGCCAGAGGACGTGCCCGCTCTGCCGGACGGTGTTTATTCCGGCCGATTTGCGGAGCGGTGGTTGTAGCGATAGCGACGAGAGGATTTGGGAGGAGGATTCGGAAATCTTTGAACTACTACTCCACCACGGCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTCTTCTCACCGCTGGTTCG

Protein sequence

MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGPSSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSSSSSSLLTAGS
Homology
BLAST of MS017731 vs. NCBI nr
Match: XP_022159549.1 (E3 ubiquitin-protein ligase RHA1B [Momordica charantia])

HSP 1 Score: 360.1 bits (923), Expect = 1.1e-95
Identity = 182/190 (95.79%), Postives = 182/190 (95.79%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLSLLGLLRKLI VLFRLLGLQDFLEPDIPWPNQADFFPTGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLISVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
           SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD
Sbjct: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGD       SSS
Sbjct: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGD-------SSS 180

Query: 181 SSSSLLTAGS 191
           SSSSLLTAGS
Sbjct: 181 SSSSLLTAGS 183

BLAST of MS017731 vs. NCBI nr
Match: XP_038906771.1 (E3 ubiquitin-protein ligase RHA1B [Benincasa hispida])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 160/189 (84.66%), Postives = 168/189 (88.89%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLS LG LRKLI +LFRLLGLQDFLEPDIPWPN  D FPTGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVVKFSELL+PPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD
Sbjct: 61  FTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLRSGGC + D+R+W EDSEIFE L  H D      SSSS
Sbjct: 121 RWIGYGQRTCPLCRTVFIPPDLRSGGC-NFDDRLW-EDSEIFEAL--HTD------SSSS 179

Query: 181 SSSSLLTAG 190
           SSSSLL+AG
Sbjct: 181 SSSSLLSAG 179

BLAST of MS017731 vs. NCBI nr
Match: XP_023549736.1 (E3 ubiquitin-protein ligase RHA1B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 3.1e-77
Identity = 152/180 (84.44%), Postives = 164/180 (91.11%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLS+LG LRKLI +LFRLLGLQDFLEPDIPWPNQ+D F TGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSVLGFLRKLISLLFRLLGLQDFLEPDIPWPNQSDSFTTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVVKFSELL+PPESCAVCLYEFE+DDEIRRLANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLRSG C + D+R+W EDSEIFE L  H DSSSSS+  S+
Sbjct: 121 RWIGYGQRTCPLCRTVFIPGDLRSGVC-NFDDRLW-EDSEIFEAL--HSDSSSSSTLLSA 176

BLAST of MS017731 vs. NCBI nr
Match: KAG6579522.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016982.1 E3 ubiquitin-protein ligase RHA1B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 5.3e-77
Identity = 151/179 (84.36%), Postives = 163/179 (91.06%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLS+LG LRKLI +LFRLLGLQDFLEPDIPWPNQ+D F TGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSVLGFLRKLISLLFRLLGLQDFLEPDIPWPNQSDSFTTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVVKFSELL+PPESCAVCLYEFE+DDEIRRLANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLRSG C + D+R+W EDSEIFE L  H DSSSS+  S+
Sbjct: 121 RWIGYGQRTCPLCRTVFIPGDLRSGVC-NFDDRLW-EDSEIFEAL--HSDSSSSTLLSA 175

BLAST of MS017731 vs. NCBI nr
Match: XP_022970110.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 1.5e-76
Identity = 150/179 (83.80%), Postives = 162/179 (90.50%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLS+LG LRKLI +LFRLLGLQDFLEPDIPWPNQ+D F TGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSILGFLRKLISLLFRLLGLQDFLEPDIPWPNQSDSFTTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVVKFSELL+PPESCAVCLYEFE+DDEIR LANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRHLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLRSG C + D+R+W EDSEIFE L  H DSSSS+  S+
Sbjct: 121 RWIGYGQRTCPLCRTVFIPGDLRSGVC-NFDDRLW-EDSEIFEAL--HSDSSSSTLLSA 175

BLAST of MS017731 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 85/159 (53.46%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFP  YTE+ LPKLF+  LS+LG +R ++F +FR LGL DFLE D  WP+    +PT  
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTS-YPTRI 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELL----EPPESCAVCLYEFEADDEIRRLANCRHIFHR 120
                P SA ++REILPV+KF EL     + PE+CAVCLYEFE + EIR L NCRHIFHR
Sbjct: 61  PETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHR 120

Query: 121 GCLDRWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIW 156
            CLDRW+ + Q+TCPLCRT F+P +++     + ++R+W
Sbjct: 121 SCLDRWMDHDQKTCPLCRTPFVPDEMQ----EEFNQRLW 154

BLAST of MS017731 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MG P  + EL +P   +  L ++G  R ++  L   +GL  FL+ +       +   + P
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHN-------ETSRSDP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPES-CAVCLYEFEADDEIRRLANCRHIFHRGCL 120
           +      SA +  E++PVV+FS+LL  PE  C VCL +F +DD+IR+L  C H+FH  CL
Sbjct: 61  TRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCL 120

Query: 121 DRWI-GYGQRTCPLCRTVFIPAD 142
           DRWI    + TCP+CR  F+P +
Sbjct: 121 DRWIVDCNKITCPICRNRFLPEE 136

BLAST of MS017731 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-20
Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = 0

Query: 1   MGFPASY-TELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLE------PDIPWPNQA 60
           MG P  + TEL +P   + +L ++G  R ++  L   +GL  FL+      PD+      
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDL------ 60

Query: 61  DFFPTGPSSDLDPVSAAVLREILPVVKFSEL-LEPPESCAVCLYEFEADDEIRRLANCRH 120
                  +      SA++  E++PVV+FS+L  +P + C VCL +FE+DD++R+L  C H
Sbjct: 61  -------TRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGH 120

Query: 121 IFHRGCLDRWI-GYGQRTCPLCRTVFIP------ADLRSGGCSDSDE 153
           +FH  CLDRWI  Y +  CP+CR  F+P      +D  SG    SDE
Sbjct: 121 VFHHYCLDRWIVDYNKMKCPVCRHRFLPKEKYTQSDWGSGSDWFSDE 154

BLAST of MS017731 vs. ExPASy Swiss-Prot
Match: Q570X5 (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-11
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 29  LIFVLFRLLGLQDFLEPDIPWPNQADFFPTGPSSDLDPVSAAVLREILPVVKFSELLEPP 88
           +I  LF L+ L+           +  F P    S ++   +  LRE+LP+V F E     
Sbjct: 37  IILFLFYLIYLRRSSSDLSSLGMRTTFIPGNSLSTIELGLSKELREMLPIVVFKESFTVM 96

Query: 89  ES-CAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLR 144
           +S C+VCL +++ +D+++++  C+H FH  C+D W+     TCPLCR   IP+  R
Sbjct: 97  DSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWL-TSHTTCPLCRLALIPSRSR 151

BLAST of MS017731 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 0

Query: 57  PTGPSSDLDPVSAAVLREILPVVKFSELL--EPPESCAVCLYEFEADDEIRRLANCRHIF 116
           PT  SS L P+   VL +I P+  +S      P E C+VCL EFE DDE R L  C H+F
Sbjct: 78  PTQSSSSLSPLDPTVLEKI-PIFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVF 137

Query: 117 HRGCLDRWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSS 176
           H  C+D W    + +CPLCR    PA   +           E  + +F  +    D+ + 
Sbjct: 138 HVDCIDTWF-RSRSSCPLCRAPVQPAQPVTEP---------EPVAAVFPSVKPIEDTEAG 197

Query: 177 SSSSSSSSSSLLTAGS 191
           SSSSS  S S   + S
Sbjct: 198 SSSSSDESESSTPSSS 202

BLAST of MS017731 vs. ExPASy TrEMBL
Match: A0A6J1E2N7 (E3 ubiquitin-protein ligase RHA1B OS=Momordica charantia OX=3673 GN=LOC111025932 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.5e-96
Identity = 182/190 (95.79%), Postives = 182/190 (95.79%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLSLLGLLRKLI VLFRLLGLQDFLEPDIPWPNQADFFPTGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLISVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
           SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD
Sbjct: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGD       SSS
Sbjct: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGD-------SSS 180

Query: 181 SSSSLLTAGS 191
           SSSSLLTAGS
Sbjct: 181 SSSSLLTAGS 183

BLAST of MS017731 vs. ExPASy TrEMBL
Match: A0A6J1I1X7 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111469101 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.5e-77
Identity = 150/179 (83.80%), Postives = 162/179 (90.50%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLS+LG LRKLI +LFRLLGLQDFLEPDIPWPNQ+D F TGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSILGFLRKLISLLFRLLGLQDFLEPDIPWPNQSDSFTTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVVKFSELL+PPESCAVCLYEFE+DDEIR LANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRHLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLRSG C + D+R+W EDSEIFE L  H DSSSS+  S+
Sbjct: 121 RWIGYGQRTCPLCRTVFIPGDLRSGVC-NFDDRLW-EDSEIFEAL--HSDSSSSTLLSA 175

BLAST of MS017731 vs. ExPASy TrEMBL
Match: A0A6J1K664 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111491048 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.7e-76
Identity = 153/189 (80.95%), Postives = 166/189 (87.83%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLSLLG LRKLI +LFRLLGLQDFLEPDIPW N +D FPTGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFRLLGLQDFLEPDIPWSNHSDSFPTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVV+FSELL+PPESCAVCLYEFE DDEIRRLANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLR+GGC + D+R W EDSE+FE L  H D      SSSS
Sbjct: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGC-NFDDRPW-EDSELFEAL--HTD------SSSS 179

Query: 181 SSSSLLTAG 190
           S+ +LL+AG
Sbjct: 181 STPTLLSAG 179

BLAST of MS017731 vs. ExPASy TrEMBL
Match: A0A6J1EQ05 (E3 ubiquitin-protein ligase RHA1B OS=Cucurbita moschata OX=3662 GN=LOC111435580 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.7e-76
Identity = 150/179 (83.80%), Postives = 162/179 (90.50%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLS+LG LRKLI +LFRLLGLQDFLEPDI WPNQ+D F TGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSVLGFLRKLISLLFRLLGLQDFLEPDILWPNQSDSFTTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVVKFSELL+PPESCAVCLYEFE+DDEIRRLANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVKFSELLDPPESCAVCLYEFESDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLRSG C + D+R+W EDSEIFE L  H DSSSS+  S+
Sbjct: 121 RWIGYGQRTCPLCRTVFIPGDLRSGVC-NFDDRLW-EDSEIFEAL--HSDSSSSTLLSA 175

BLAST of MS017731 vs. ExPASy TrEMBL
Match: A0A6J1H5J7 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111459775 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 149/180 (82.78%), Postives = 161/180 (89.44%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFPASYTELLLPKLFIHVLSLLG LRKLI +LF LLGLQDFLEPDIPW N +D FPTGP
Sbjct: 1   MGFPASYTELLLPKLFIHVLSLLGFLRKLISLLFCLLGLQDFLEPDIPWSNHSDSFPTGP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLD 120
            +DLDP+SAAVLREILPVV+FSELL+PPESCAVCLYEFE DDEIRRLANCRHIFHRGCLD
Sbjct: 61  LTDLDPLSAAVLREILPVVRFSELLDPPESCAVCLYEFETDDEIRRLANCRHIFHRGCLD 120

Query: 121 RWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSSSSSSSS 180
           RWIGYGQRTCPLCRTVFIP DLR+GGC + D+R W EDSE+FE L  H DSSSSS+  S+
Sbjct: 121 RWIGYGQRTCPLCRTVFIPPDLRTGGC-NFDDRAW-EDSELFEAL--HTDSSSSSTLLSA 176

BLAST of MS017731 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 85/159 (53.46%), Postives = 111/159 (69.81%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFP  YTE+ LPKLF+  LS+LG +R ++F +FR LGL DFLE D  WP+    +PT  
Sbjct: 1   MGFPVGYTEVFLPKLFVQTLSILGFIRTIVFSIFRFLGLSDFLEMDQTWPDYTS-YPTRI 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELL----EPPESCAVCLYEFEADDEIRRLANCRHIFHR 120
                P SA ++REILPV+KF EL     + PE+CAVCLYEFE + EIR L NCRHIFHR
Sbjct: 61  PETRSPFSALLIREILPVIKFEELTNSGEDLPENCAVCLYEFEGEQEIRWLRNCRHIFHR 120

Query: 121 GCLDRWIGYGQRTCPLCRTVFIPADLRSGGCSDSDERIW 156
            CLDRW+ + Q+TCPLCRT F+P +++     + ++R+W
Sbjct: 121 SCLDRWMDHDQKTCPLCRTPFVPDEMQ----EEFNQRLW 154

BLAST of MS017731 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 177.6 bits (449), Expect = 9.7e-45
Identity = 97/177 (54.80%), Postives = 124/177 (70.06%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MGFP  Y+ELLLPK+F ++LS LGL+RKLI  +F+++GL DFLEP+      +  +P  P
Sbjct: 1   MGFPVGYSELLLPKIFFYLLSFLGLIRKLISTMFKIIGLPDFLEPE----PVSTSWPDPP 60

Query: 61  SSDLDPVSAAVLR-EILPVVKFSELLEP-PESCAVCLYEFEADDEIRRLANCRHIFHRGC 120
            +   P SAA+L  E+LPVV+FS++  P  E CAVCLY+FE DDEIRRL NCRHIFHRGC
Sbjct: 61  PTLTKPDSAAILAGEMLPVVRFSDINRPESECCAVCLYDFENDDEIRRLTNCRHIFHRGC 120

Query: 121 LDRW-IGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFELLLHHGDSSSS 175
           LDRW +GY Q TCPLCRT FIP  L+     + ++R+W + S +   LL   D SSS
Sbjct: 121 LDRWMMGYNQMTCPLCRTQFIPDHLQ----LEFNQRLWSQSSAVSSQLL---DESSS 166

BLAST of MS017731 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 8.5e-41
Identity = 91/178 (51.12%), Postives = 114/178 (64.04%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPT-- 60
           MG+P  YTELLLP++F+H+LSLLGL+R LI   FR+LGL DFLE D    + +   P   
Sbjct: 1   MGYPVGYTELLLPRIFLHLLSLLGLIRTLIDTGFRILGLPDFLESDPVSSSSSWLEPPYM 60

Query: 61  -------GPSSDLDPVSAAVLREILPVVKFSELLEP-----PESCAVCLYEFEADDEIRR 120
                    SS   PV+A +  EILPV++FSEL  P      + CAVCL+EFE DDEIRR
Sbjct: 61  STAAHHHQESSFFFPVAARLAGEILPVIRFSELTRPGFGSGSDCCAVCLHEFENDDEIRR 120

Query: 121 LANCRHIFHRGCLDRW-IGYGQRTCPLCRTVFIPADLRSGGCSDSDERIWEEDSEIFE 164
           L NC+HIFHR CLDRW +GY Q TCPLCRT FI  +L+       ++R+W E   + E
Sbjct: 121 LTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISDELQVA----FNQRVWSESELLAE 174

BLAST of MS017731 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B )

HSP 1 Score: 101.3 bits (251), Expect = 8.9e-22
Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 0

Query: 1   MGFPASYTELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLEPDIPWPNQADFFPTGP 60
           MG P  + EL +P   +  L ++G  R ++  L   +GL  FL+ +       +   + P
Sbjct: 1   MGLPTDFKELQIPGYVLKTLYVIGFFRDMVDALCPYIGLPSFLDHN-------ETSRSDP 60

Query: 61  SSDLDPVSAAVLREILPVVKFSELLEPPES-CAVCLYEFEADDEIRRLANCRHIFHRGCL 120
           +      SA +  E++PVV+FS+LL  PE  C VCL +F +DD+IR+L  C H+FH  CL
Sbjct: 61  TRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVSDDKIRQLPKCGHVFHHRCL 120

Query: 121 DRWI-GYGQRTCPLCRTVFIPAD 142
           DRWI    + TCP+CR  F+P +
Sbjct: 121 DRWIVDCNKITCPICRNRFLPEE 136

BLAST of MS017731 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = 0

Query: 1   MGFPASY-TELLLPKLFIHVLSLLGLLRKLIFVLFRLLGLQDFLE------PDIPWPNQA 60
           MG P  + TEL +P   + +L ++G  R ++  L   +GL  FL+      PD+      
Sbjct: 1   MGLPEDFITELQIPSYILKILYVIGFFRDIVDALCPYIGLPRFLDHNETSAPDL------ 60

Query: 61  DFFPTGPSSDLDPVSAAVLREILPVVKFSEL-LEPPESCAVCLYEFEADDEIRRLANCRH 120
                  +      SA++  E++PVV+FS+L  +P + C VCL +FE+DD++R+L  C H
Sbjct: 61  -------TRHALSTSASLANELIPVVRFSDLPTDPEDCCTVCLSDFESDDKVRQLPKCGH 120

Query: 121 IFHRGCLDRWI-GYGQRTCPLCRTVFIP------ADLRSGGCSDSDE 153
           +FH  CLDRWI  Y +  CP+CR  F+P      +D  SG    SDE
Sbjct: 121 VFHHYCLDRWIVDYNKMKCPVCRHRFLPKEKYTQSDWGSGSDWFSDE 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159549.11.1e-9595.79E3 ubiquitin-protein ligase RHA1B [Momordica charantia][more]
XP_038906771.11.1e-7984.66E3 ubiquitin-protein ligase RHA1B [Benincasa hispida][more]
XP_023549736.13.1e-7784.44E3 ubiquitin-protein ligase RHA1B [Cucurbita pepo subsp. pepo][more]
KAG6579522.15.3e-7784.36Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp... [more]
XP_022970110.11.5e-7683.80E3 ubiquitin-protein ligase RHA1B-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9XF921.6e-4453.46Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH... [more]
Q9SUS51.2e-2037.76E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ... [more]
Q9SUS44.7e-2035.93Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH... [more]
Q570X52.4e-1132.76RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1[more]
Q9LZJ65.8e-1036.76RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1E2N75.5e-9695.79E3 ubiquitin-protein ligase RHA1B OS=Momordica charantia OX=3673 GN=LOC111025932... [more]
A0A6J1I1X77.5e-7783.80E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC1114691... [more]
A0A6J1K6641.7e-7680.95E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC1114910... [more]
A0A6J1EQ053.7e-7683.80E3 ubiquitin-protein ligase RHA1B OS=Cucurbita moschata OX=3662 GN=LOC111435580 ... [more]
A0A6J1H5J71.1e-7582.78E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
Match NameE-valueIdentityDescription
AT3G61460.11.1e-4553.46brassinosteroid-responsive RING-H2 [more]
AT1G63840.19.7e-4554.80RING/U-box superfamily protein [more]
AT5G41400.18.5e-4151.12RING/U-box superfamily protein [more]
AT4G11360.18.9e-2237.76RING-H2 finger A1B [more]
AT4G11370.13.4e-2135.93RING-H2 finger A1A [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 90..134
e-value: 0.0082
score: 7.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 91..133
e-value: 2.9E-6
score: 36.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 90..134
e-value: 1.7E-13
score: 50.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 91..134
score: 12.386007
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 86..137
e-value: 1.8E-17
score: 64.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..190
NoneNo IPR availablePANTHERPTHR45969:SF10BRH1 RING FINGER PROTEINcoord: 1..155
NoneNo IPR availablePANTHERPTHR45969RING ZINC FINGER PROTEIN-RELATEDcoord: 1..155
NoneNo IPR availableCDDcd16448RING-H2coord: 91..134
e-value: 1.51013E-13
score: 60.1583
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 73..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017731.1MS017731.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding