MS017719 (gene) Bitter gourd (TR) v1

Overview
NameMS017719
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsignal peptide peptidase-like 2
Locationscaffold373: 1851713 .. 1851868 (+)
RNA-Seq ExpressionMS017719
SyntenyMS017719
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTCAGAGGCATTTTCTTGGTGGGTTGGCCATTTTCGCTCTGCTCTTACTGCTGATTTGTTATCCCTGCCACGTGACGGCTGGGGATATTGTTCATCATGACGATTTAACTCCCAAAAAGCCTGGCTGTGAGAATGACTTCATTCTGGTA

mRNA sequence

ATGGATTTTCAGAGGCATTTTCTTGGTGGGTTGGCCATTTTCGCTCTGCTCTTACTGCTGATTTGTTATCCCTGCCACGTGACGGCTGGGGATATTGTTCATCATGACGATTTAACTCCCAAAAAGCCTGGCTGTGAGAATGACTTCATTCTGGTA

Coding sequence (CDS)

ATGGATTTTCAGAGGCATTTTCTTGGTGGGTTGGCCATTTTCGCTCTGCTCTTACTGCTGATTTGTTATCCCTGCCACGTGACGGCTGGGGATATTGTTCATCATGACGATTTAACTCCCAAAAAGCCTGGCTGTGAGAATGACTTCATTCTGGTA

Protein sequence

MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV
Homology
BLAST of MS017719 vs. NCBI nr
Match: XP_022157109.1 (signal peptide peptidase-like 2 isoform X1 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 5.1e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFI V
Sbjct: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFIXV 52

BLAST of MS017719 vs. NCBI nr
Match: XP_022157113.1 (signal peptide peptidase-like 2 isoform X2 [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 6.6e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFI V
Sbjct: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFIQV 52

BLAST of MS017719 vs. NCBI nr
Match: XP_023550106.1 (signal peptide peptidase-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQR FLGG  I AL+LLLI +PCHVTAGDIVHHDDLTPKKPGCENDFILV
Sbjct: 1  MDFQRRFLGGFTISALVLLLI-FPCHVTAGDIVHHDDLTPKKPGCENDFILV 51

BLAST of MS017719 vs. NCBI nr
Match: XP_004143899.1 (signal peptide peptidase-like 2 isoform X1 [Cucumis sativus] >XP_031741839.1 signal peptide peptidase-like 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGG +I AL+LLLI +P HVTAGDIVHHDDLTPKKPGCENDFILV
Sbjct: 1  MDFQRHFLGGFSICALVLLLI-FPSHVTAGDIVHHDDLTPKKPGCENDFILV 51

BLAST of MS017719 vs. NCBI nr
Match: KAE8647858.1 (hypothetical protein Csa_000427 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGG +I AL+LLLI +P HVTAGDIVHHDDLTPKKPGCENDFILV
Sbjct: 1  MDFQRHFLGGFSICALVLLLI-FPSHVTAGDIVHHDDLTPKKPGCENDFILV 51

BLAST of MS017719 vs. ExPASy Swiss-Prot
Match: Q8W469 (Signal peptide peptidase-like 2 OS=Arabidopsis thaliana OX=3702 GN=SPPL2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-07
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 18 LLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          +LL+     VTAGDIVH D+L PKKPGCENDF+LV
Sbjct: 16 ILLLSLRSTVTAGDIVHQDNLAPKKPGCENDFVLV 50

BLAST of MS017719 vs. ExPASy Swiss-Prot
Match: Q0WMJ8 (Signal peptide peptidase-like 4 OS=Arabidopsis thaliana OX=3702 GN=SPPL4 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-05
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0

Query: 13 IFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          +F LLL    + C   AGDIVHHDD  P++PGC N+F+LV
Sbjct: 13 VFGLLLYSASFVC---AGDIVHHDDSLPQRPGCNNNFVLV 49

BLAST of MS017719 vs. ExPASy Swiss-Prot
Match: Q5Z413 (Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL5 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-05
Identity = 24/41 (58.54%), Postives = 26/41 (63.41%), Query Frame = 0

Query: 12 AIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          A+FALL+           GDIVHHDD  PK PGC NDFILV
Sbjct: 7  AVFALLMASALAGA-AAGGDIVHHDDEAPKIPGCSNDFILV 46

BLAST of MS017719 vs. ExPASy Swiss-Prot
Match: Q0DWA9 (Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-04
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 0

Query: 15 ALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          ALLL++         GDIVH DD  PK PGC NDF+LV
Sbjct: 11 ALLLVMAALAGVAAGGDIVHQDDEAPKIPGCSNDFVLV 48

BLAST of MS017719 vs. ExPASy TrEMBL
Match: A0A6J1DVK0 (signal peptide peptidase-like 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023910 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.5e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFI V
Sbjct: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFIXV 52

BLAST of MS017719 vs. ExPASy TrEMBL
Match: A0A6J1DSJ4 (signal peptide peptidase-like 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023910 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFI V
Sbjct: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFIQV 52

BLAST of MS017719 vs. ExPASy TrEMBL
Match: A0A0A0KKI6 (PA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153030 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.0e-17
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MDFQRHFLGG +I AL+LLLI +P HVTAGDIVHHDDLTPKKPGCENDFILV
Sbjct: 1  MDFQRHFLGGFSICALVLLLI-FPSHVTAGDIVHHDDLTPKKPGCENDFILV 51

BLAST of MS017719 vs. ExPASy TrEMBL
Match: A0A6J1I2N6 (signal peptide peptidase-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111469043 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MD QR FLGG AI AL+LLLI +PCHVTAGDIVHHDDLTPKKPGCENDFILV
Sbjct: 1  MDLQRRFLGGFAISALVLLLI-FPCHVTAGDIVHHDDLTPKKPGCENDFILV 51

BLAST of MS017719 vs. ExPASy TrEMBL
Match: A0A6J1EMV4 (signal peptide peptidase-like 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435801 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-16
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MDFQRHFLGGLAIFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          MD QR FLGG  I AL+LLLI +PCHVTAGDIVHHDDLTPKKPGCENDFILV
Sbjct: 1  MDLQRRFLGGFVISALVLLLI-FPCHVTAGDIVHHDDLTPKKPGCENDFILV 51

BLAST of MS017719 vs. TAIR 10
Match: AT1G63690.2 (SIGNAL PEPTIDE PEPTIDASE-LIKE 2 )

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-08
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 18 LLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          +LL+     VTAGDIVH D+L PKKPGCENDF+LV
Sbjct: 16 ILLLSLRSTVTAGDIVHQDNLAPKKPGCENDFVLV 50

BLAST of MS017719 vs. TAIR 10
Match: AT1G63690.1 (SIGNAL PEPTIDE PEPTIDASE-LIKE 2 )

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-08
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 18 LLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          +LL+     VTAGDIVH D+L PKKPGCENDF+LV
Sbjct: 16 ILLLSLRSTVTAGDIVHQDNLAPKKPGCENDFVLV 50

BLAST of MS017719 vs. TAIR 10
Match: AT1G01650.1 (SIGNAL PEPTIDE PEPTIDASE-LIKE 4 )

HSP 1 Score: 49.7 bits (117), Expect = 8.4e-07
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0

Query: 13 IFALLLLLICYPCHVTAGDIVHHDDLTPKKPGCENDFILV 53
          +F LLL    + C   AGDIVHHDD  P++PGC N+F+LV
Sbjct: 13 VFGLLLYSASFVC---AGDIVHHDDSLPQRPGCNNNFVLV 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157109.15.1e-2298.08signal peptide peptidase-like 2 isoform X1 [Momordica charantia][more]
XP_022157113.16.6e-2298.08signal peptide peptidase-like 2 isoform X2 [Momordica charantia][more]
XP_023550106.11.4e-1686.54signal peptide peptidase-like 2 [Cucurbita pepo subsp. pepo][more]
XP_004143899.11.9e-1686.54signal peptide peptidase-like 2 isoform X1 [Cucumis sativus] >XP_031741839.1 sig... [more]
KAE8647858.11.9e-1686.54hypothetical protein Csa_000427 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q8W4692.1e-0768.57Signal peptide peptidase-like 2 OS=Arabidopsis thaliana OX=3702 GN=SPPL2 PE=2 SV... [more]
Q0WMJ81.2e-0555.00Signal peptide peptidase-like 4 OS=Arabidopsis thaliana OX=3702 GN=SPPL4 PE=2 SV... [more]
Q5Z4134.5e-0558.54Signal peptide peptidase-like 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL... [more]
Q0DWA91.0e-0455.26Signal peptide peptidase-like 4 OS=Oryza sativa subsp. japonica OX=39947 GN=SPPL... [more]
Match NameE-valueIdentityDescription
A0A6J1DVK02.5e-2298.08signal peptide peptidase-like 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1DSJ43.2e-2298.08signal peptide peptidase-like 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0KKI69.0e-1786.54PA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153030 PE=3 SV=... [more]
A0A6J1I2N61.2e-1686.54signal peptide peptidase-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111469043 PE=3... [more]
A0A6J1EMV43.4e-1684.62signal peptide peptidase-like 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
Match NameE-valueIdentityDescription
AT1G63690.21.5e-0868.57SIGNAL PEPTIDE PEPTIDASE-LIKE 2 [more]
AT1G63690.11.5e-0868.57SIGNAL PEPTIDE PEPTIDASE-LIKE 2 [more]
AT1G01650.18.4e-0755.00SIGNAL PEPTIDE PEPTIDASE-LIKE 4 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017719.1MS017719.1mRNA