MS017704 (gene) Bitter gourd (TR) v1

Overview
NameMS017704
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold373: 1723174 .. 1723323 (+)
RNA-Seq ExpressionMS017704
SyntenyMS017704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATTGGCAATAGCAGCTTGGCTAGCTTCTGGCATGACAGGTGGGCTTCCAACGCCTCATTGATTGAGGATTTTCCCCAGCTTTACTCACTCTCTACAAGGAAAGAAGCTTGTGTTAGCAAACTGTGGAATCAAAACACAACTTCATGG

mRNA sequence

AAAATTGGCAATAGCAGCTTGGCTAGCTTCTGGCATGACAGGTGGGCTTCCAACGCCTCATTGATTGAGGATTTTCCCCAGCTTTACTCACTCTCTACAAGGAAAGAAGCTTGTGTTAGCAAACTGTGGAATCAAAACACAACTTCATGG

Coding sequence (CDS)

AAAATTGGCAATAGCAGCTTGGCTAGCTTCTGGCATGACAGGTGGGCTTCCAACGCCTCATTGATTGAGGATTTTCCCCAGCTTTACTCACTCTCTACAAGGAAAGAAGCTTGTGTTAGCAAACTGTGGAATCAAAACACAACTTCATGG

Protein sequence

KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQNTTSW
Homology
BLAST of MS017704 vs. NCBI nr
Match: RVW93188.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 2    IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN 45
            +GN    SFW DRW  NA L E FP LY+LST KEA V+ +W+
Sbjct: 1647 VGNGRRLSFWRDRWCGNAPLCESFPSLYALSTEKEAWVADVWD 1689

BLAST of MS017704 vs. NCBI nr
Match: RVX06643.1 (SUN domain-containing protein 1 [Vitis vinifera])

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 1   KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN 47
           K+G  +  +FW DRW  NA+L + FPQLY+L+  + A V+++W+ N
Sbjct: 671 KVGKGTKVNFWTDRWCGNATLSQSFPQLYALAVHRNATVNEVWDSN 716

BLAST of MS017704 vs. NCBI nr
Match: MCH99327.1 (ribonuclease H protein [Trifolium medium])

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 1   KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN 47
           K+GN    SFW D+W  + +L + FP+L+S+ST+K+  V+ LWN++
Sbjct: 55  KLGNGEQTSFWKDKWVGDTTLKDRFPRLFSISTQKDVSVASLWNRD 100

BLAST of MS017704 vs. NCBI nr
Match: RVX03344.1 (hypothetical protein CK203_019918 [Vitis vinifera])

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0

Query: 2   IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN 45
           +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Sbjct: 60  VGNGRRVSFWRDRWCGDAPLCESFPSLYALSIEKEAWVADVWD 102

BLAST of MS017704 vs. NCBI nr
Match: CAN69137.1 (hypothetical protein VITISV_022037 [Vitis vinifera])

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0

Query: 2   IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN 45
           +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Sbjct: 305 VGNGRRVSFWRDRWCGDAPLCESFPSLYALSIEKEAWVADVWD 347

BLAST of MS017704 vs. ExPASy TrEMBL
Match: A0A438I8Y6 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_476 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 2    IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN 45
            +GN    SFW DRW  NA L E FP LY+LST KEA V+ +W+
Sbjct: 1647 VGNGRRLSFWRDRWCGNAPLCESFPSLYALSTEKEAWVADVWD 1689

BLAST of MS017704 vs. ExPASy TrEMBL
Match: A0A438JCG0 (SUN domain-containing protein 1 OS=Vitis vinifera OX=29760 GN=SUN1_1 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 7.6e-05
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 1   KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN 47
           K+G  +  +FW DRW  NA+L + FPQLY+L+  + A V+++W+ N
Sbjct: 671 KVGKGTKVNFWTDRWCGNATLSQSFPQLYALAVHRNATVNEVWDSN 716

BLAST of MS017704 vs. ExPASy TrEMBL
Match: A0A392NHI5 (Ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-04
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 1   KIGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWNQN 47
           K+GN    SFW D+W  + +L + FP+L+S+ST+K+  V+ LWN++
Sbjct: 55  KLGNGEQTSFWKDKWVGDTTLKDRFPRLFSISTQKDVSVASLWNRD 100

BLAST of MS017704 vs. ExPASy TrEMBL
Match: A5AKJ3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_022037 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0

Query: 2   IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN 45
           +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Sbjct: 305 VGNGRRVSFWRDRWCGDAPLCESFPSLYALSIEKEAWVADVWD 347

BLAST of MS017704 vs. ExPASy TrEMBL
Match: A0A438J305 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_019918 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 0

Query: 2   IGNSSLASFWHDRWASNASLIEDFPQLYSLSTRKEACVSKLWN 45
           +GN    SFW DRW  +A L E FP LY+LS  KEA V+ +W+
Sbjct: 60  VGNGRRVSFWRDRWCGDAPLCESFPSLYALSIEKEAWVADVWD 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW93188.12.4e-0555.81Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVX06643.11.6e-0443.48SUN domain-containing protein 1 [Vitis vinifera][more]
MCH99327.12.1e-0443.48ribonuclease H protein [Trifolium medium][more]
RVX03344.13.5e-0451.16hypothetical protein CK203_019918 [Vitis vinifera][more]
CAN69137.13.5e-0451.16hypothetical protein VITISV_022037 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A438I8Y61.2e-0555.81Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A438JCG07.6e-0543.48SUN domain-containing protein 1 OS=Vitis vinifera OX=29760 GN=SUN1_1 PE=4 SV=1[more]
A0A392NHI51.0e-0443.48Ribonuclease H protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A5AKJ31.7e-0451.16Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_022037 PE=4 SV=1[more]
A0A438J3051.7e-0451.16Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_019918 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017704.1MS017704.1mRNA