MS017613 (gene) Bitter gourd (TR) v1

Overview


Name	MS017613
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	scaffold373: 937436 .. 937573 (-)
RNA-Seq Expression	MS017613
Synteny	MS017613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTGTCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCTTCTAGATGGAATGGATGGAAGAGTTCTT

mRNA sequence

TATTTGTCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCTTCTAGATGGAATGGATGGAAGAGTTCTT

Coding sequence (CDS)

TATTTGTCACTGCGAATGGACGGCCGTGTTCGTGGTAGCGGTGTTGGTTATCCTCCTTGGAATGCTCTTGTTGCACAACTACCACCTGTGAAAGGGCTATGGTCAGGTCTTCTAGATGGAATGGATGGAAGAGTTCTT

Protein sequence

YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

[Close]

BLAST of MS017613 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.8 bits (255), Expect = 7.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 335 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

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BLAST of MS017613 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 7.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 288 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]

BLAST of MS017613 vs. NCBI nr
Match: XP_022967293.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 7.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 291 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MS017613 vs. NCBI nr
Match: XP_009397542.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Musa acuminata subsp. malaccensis] >CAG1844477.1 unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 102.8 bits (255), Expect = 7.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 280 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 325

[Close]

BLAST of MS017613 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 7.9e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 291 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MS017613 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 291 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MS017613 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 291 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of MS017613 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 335 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of MS017613 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 293 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of MS017613 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.8e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 47
           YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 293 YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of MS017613 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV 46
           YLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Sbjct: 303 YLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLLDGMDGRV 347

[Close]

BLAST of MS017613 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.0e-04
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 0


Query: 1   YLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL 38
           Y+ LR+DGRVR SG G P W  +  +LPP+  + S L
Sbjct: 415 YIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of MS017613 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554665.1	7.9e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_038888898.1	7.9e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]
XP_022967293.1	7.9e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294....	[more]
XP_009397542.1	7.9e-19	100.00	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Musa acuminata subsp....	[more]
XP_022131239.1	7.9e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_0221312...	[more]

BLAST of MS017613 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HWD0	3.8e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1BP58	3.8e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1HGA1	3.8e-19	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3BG35	3.8e-19	100.00	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0L902	3.8e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]

BLAST of MS017613 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	1.3e-19	86.67	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	2.0e-04	48.65	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 1..44
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS017613.1	MS017613.1	mRNA